| Geant4 Cross Reference |
1 # Category emdna History << 1 =========================================================
>> 2 Geant4 - an Object-Oriented Toolkit for Simulation in HEP
>> 3 =========================================================
>> 4
>> 5 Category History file
>> 6 ---------------------
>> 7 This file should be used by G4 developers and category coordinators
>> 8 to briefly summarize all major modifications introduced in the code
>> 9 and keep track of all category-tags.
>> 10 It DOES NOT substitute the CVS log-message one should put at every
>> 11 committal in the CVS repository !
>> 12
>> 13 ----------------------------------------------------------
>> 14 * Reverse chronological order (last date on top), please *
>> 15 ----------------------------------------------------------*
2 16
3 See `CONTRIBUTING.rst` for details of **requir << 17 18-05-2022, G. Cosmo, emdna-V10-07-16
4 which **must** added in reverse chronological <<
5 It must **not** be used as a substitute for wr <<
6 <<
7 ---------------------------------------------- <<
8 <<
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) <<
10 - missing value in DNA PTB Ionization Structur <<
11 - missing GetMaterial() in DNA PTB Excitation <<
12 <<
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) <<
14 - Modified the molecule names of OH, HO2, O in <<
15 Each molecule configuration has a molecule d <<
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with <<
35 of std::function in G4OctreeFinder. <<
36 <<
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) <<
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with <<
51 Added missing declarations for TG4MoleculeSh <<
52 Based on [GitHub PR#69](https://github.com/G <<
53 <<
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) <<
106 - Use G4FindDataDir to access data libraries i <<
107 <<
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) <<
109 - correct fastercode section for dna opt6 <<
110 <<
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) <<
112 - correct scavenger counter for oxygen <<
113 <<
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) <<
115 - Fixed the K shell bug in G4DNARuddIonisation <<
116 <<
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) <<
118 - improved equilibrium processes, introduced G <<
119 <<
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) <<
121 - In navigation classes, removed references to <<
122 which is now deprecated. <<
123 <<
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) <<
125 - Removed references to unused G4GRSSolid and <<
126 <<
127 ## 2023-08-29 (emdna-V11-01-18) <<
128 - Fix minor/obvious Coverity issues <<
129 <<
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) <<
131 - Apply core clang-tidy fixes plus those for <<
132 - Cons/destructor modernization <<
133 - Readability and logic for conditionals/boo <<
134 <<
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) <<
136 - Apply patch from [GitHub PR 58](https://gith <<
137 - Use std::erfc to avoid precision loss <<
138 - Remove unused header <<
139 <<
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) <<
141 - minor correction for DNA material in option6 <<
142 <<
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) <<
144 - use analytical method for DNA material in op <<
145 <<
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 <<
147 - G4DNARuddIonisationExtendedModel - model re- <<
148 threads, applicable for scaled energy interv <<
149 an ion data is not available proton x-sectio <<
150 used, sampling of delta-electron is done usi <<
151 <<
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) <<
153 - Modified DNA cross section file name to new <<
154 <<
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) <<
156 - Add DNA cross section to dna_option6 <<
157 <<
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) <<
159 - Fix Compilation warnings on XCode <<
160 <<
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) <<
162 - correct the initial values of G4DNAEventSche <<
163 <<
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) <<
165 - add time structure (pulsed beam) to water ra <<
166 <<
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) <<
168 - correct KDTree bug <<
169 <<
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) <<
171 - icsd physicslist: deleted unused model, <<
172 - Apdated RegisterModel function with new stru <<
173 - added model data to G4DNAMaterialManager sin <<
174 <<
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) <<
176 - Fixed compilation warning on macOS/XCode for <<
177 in G4DNAVacuumModel::Initialise(). <<
178 <<
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) <<
180 - Introduced G4DNAMaterialManager to manage av <<
181 and keeps DNA cross section data in one thread <<
182 - minor change in G4VDNAModel <<
183 <<
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) <<
185 - reorganize multiple material model of PTB mo <<
186 G4VDNAModel plays like a data layer for multip <<
187 The concrete models are independent of G4DNAMo <<
188 <<
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) <<
190 - replaced string to material index and clean <<
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, <<
192 G4DNAPTBExcitationStructure) - PTB models <<
193 - added material pointer members for each conc <<
194 - removed unused objects (G4DataVector()) <<
195 <<
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) <<
197 - clean G4DNAModelInterface file for the model <<
198 <<
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) <<
200 - fix coverity of G4DNARuddIonisationExtendedM <<
201 (Uninitialized scalar variable) from cand1 ana <<
202 <<
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 <<
204 - G4DNARuddIonisationExtendedModel - fixed com <<
205 radioactive decay module - before this upd <<
206 only 5 ions have data needed for this mode <<
207 model scaling relation to the carbon ion i <<
208 no data; low-energy limit is used now more <<
209 but not killed, because they may have radi <<
210 lines are removed from the class <<
211 <<
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) <<
213 - Fixed more compilation warnings for implicit <<
214 <<
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) <<
216 - delete unused tests in dna (G4DNAProcessTest <<
217 <<
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) <<
219 - Fixed compilation warnings for implicit type <<
220 <<
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 <<
222 - G4DNAUeharaScreenedRutherfordElasticModel - <<
223 low and high energy limit for the model; r <<
224 <<
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) <<
226 - Fix Coverity issues for ref-09 <<
227 <<
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) <<
229 - minor correction of IRT-syn model (chemistry <<
230 after 1 ps. <<
231 <<
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- <<
233 - Add nitrogen models from PTra code <<
234 <<
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) <<
236 - Fixed minor mistake of file name in G4DNARPW <<
237 - Added protection for HighEnergyLimit/LowEner <<
238 G4DNARPWBAExcitationModel <<
239 <<
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) <<
241 - Fixed compilation warnings on Intel/icx comp <<
242 but not used in G4ITNavigator2. <<
243 <<
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) <<
245 - Fix user's report for IRT model. <<
246 If the first IRTSampling won't give any rea <<
247 <<
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) <<
249 - Fix Coverity static analysis for ref-08 <<
250 uninit_member in G4DNAMillerGreenExcitationMo <<
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI <<
252 Use auto & instead of auto : G4ITFinder, G4DN <<
253 <<
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) <<
255 - Resolve dependency inconsistencies : <<
256 dna/management/include/G4ChemicalMoleculeF <<
257 dna/management/include/G4UserMeshAction.hh <<
258 dna/management/include/G4OctreeFinder.hh i <<
259 <<
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) <<
261 - Partially resolve dependency inconsistencies <<
262 - NB: cannot be resolved fully without intro <<
263 G4emdna-man, G4emdna-molman, G4emdna-utils <<
264 <<
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) <<
266 - Define G4CT_MAX_COUNT for changing "compile <<
267 errors on NVHPC compiler. <<
268 <<
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 <<
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo <<
271 cleanup according to the recent G4VEmProce <<
272 headers are moved to source; C++11 keyward <<
273 <<
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) <<
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela <<
276 G4DNACPA100IonisationModel.cc, G4DNAChampion <<
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo <<
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx <<
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis <<
280 G4DNASancheExcitationModel.cc : <<
281 use G4FindDataDir("G4LEDATA") to find datase <<
282 <<
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) <<
284 - correct DNA ion definitions in G4DNARuddIoni <<
285 <<
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) <<
287 - G4Octree : fixed Coverity warning. <<
288 <<
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) <<
290 - update data structure to improve performance <<
291 <<
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) <<
293 - G4ITTransportation: fixed misuse of bitwise 18 - G4ITTransportation: fixed misuse of bitwise '|' operator instead of logical.
294 19
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) <<
296 - Added missing headers. <<
297 <<
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) <<
299 - change the scavenging filter of the IRT beyo <<
300 <<
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) <<
302 - Add localthread for fUse of G4VMoleculeCount <<
303 <<
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa <<
305 - Incorporation of model based on RPWBA to tra <<
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI <<
307 <<
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) <<
309 - add UserBrownianAction in G4DNABrownianTrans <<
310 G4DNAMolecularDissociation <<
311 - replace G4int by int64_t for width integer t <<
312 - add fResetScavenger in G4SchedulerMessenger <<
313 <<
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) <<
315 - save local instances for recurrent access to <<
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo <<
317 G4DNARuddIonisationModel <<
318 - use G4Pow and G4Log instead of std::pow and <<
319 - inside G4DNARuddIonisationExtendedModel comm <<
320 inside G4DNAGenericIonsManager <<
321 <<
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) <<
323 - Debug the report #2235 which might be relate <<
324 - Clean code <<
325 - Delete G4ITFinder.cc <<
326 <<
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) <<
328 - save local instances for recurrent access to <<
329 G4DNADingfelderChargeDecreaseModel and G4DNADi <<
330 - use G4Pow and G4Log instead of std::pow and <<
331 <<
332 ## 2022-03-18 SI (emdna-V11-00-10) <<
333 - add protection in G4DNACPA100IonisationModel <<
334 <<
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) <<
336 - remove macro commands to control the chemist <<
337 (creating models in G4SchedulerMessenger can m <<
338 - add flag OctreeFinder in IRT_syn's Initializ <<
339 <<
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) <<
341 - add macro commands to control the chemistry <<
342 parameters including the chemical molecules an <<
343 <<
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) <<
345 - optimize IRT-syn model, use reaction radius <<
346 - delete G4VReactionType, G4DNAReactionTypeMan <<
347 G4DNAPartiallyDiffusionControlled <<
348 - delete G4DNAIRT_geomtries <<
349 <<
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) <<
351 - `G4ITTransportation`: Make `PrepareState` mo <<
352 - `G4DNAPolyNucleotideReactionProcess`: <<
353 - Move `PrepareState` and `State` macros int <<
354 - Make `PrepareState` more function-like, ex <<
355 - Move variable `pMoleculeA` under `G4VERBOS <<
356 <<
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) <<
358 - add the condition of water material for the <<
359 warning in G4DNAMolecularDissociation::DecayIt <<
360 <<
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) <<
362 - modify the macro in G4Molecule.cc and G4ITTy <<
363 <<
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) <<
365 - Prefer pointer to `const G4Material` if poss <<
366 <<
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) <<
368 - Remove useless `const_cast` of `G4VSensitive <<
369 <<
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) <<
371 - add G4DNAPolyNucleotideReactionProcess, G4VD <<
372 files for DNA damage applications <<
373 <<
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) <<
375 - Change to new Markdown History format <<
376 <<
377 --- <<
378 <<
379 # History entries prior to 11.0 <<
380 <<
381 8-11-2021, H. Tran, emdna-V10-07-15 20 8-11-2021, H. Tran, emdna-V10-07-15
382 - corrected Circular dependencies for mesoscop 21 - corrected Circular dependencies for mesoscopic model
383 - corrected the problem in IRT 22 - corrected the problem in IRT
384 23
385 4-11-2021, H. Tran, emdna-V10-07-14 24 4-11-2021, H. Tran, emdna-V10-07-14
386 - define a G4FakeParticleID::fLastValue in the 25 - define a G4FakeParticleID::fLastValue in the header file,
387 delete G4FakeParticleID.cc, 26 delete G4FakeParticleID.cc,
388 solve arithmetic problems, 27 solve arithmetic problems,
389 Added new mesoscopic model for dna chemistry 28 Added new mesoscopic model for dna chemistry
390 29
391 21-10-2021, W.G.Shin, emdna-V10-07-13 30 21-10-2021, W.G.Shin, emdna-V10-07-13
392 - Added a virtual classes for DNA geometry - G 31 - Added a virtual classes for DNA geometry - G4VDNAMolecularGeometry
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul 32 Modified classes - G4DNAIRT, G4DNAIRTMoleculeEncounterStepper,
394 G4ITModelProcessor, G4Sch 33 G4ITModelProcessor, G4Scheduler,
395 G4DNAMolecularReactionTab 34 G4DNAMolecularReactionTable
396 35
397 23-09-2021, A. Ribon, emdna-V10-07-12 36 23-09-2021, A. Ribon, emdna-V10-07-12
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit 37 - G4ITTransportation, G4DNAElastic, G4DNAExcitation, G4DNAIonisation,
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh << 38 G4DNAVibExcitation, G4DNAAttachment, G4DNAChargeDecrease,
400 G4DNAChargeIncrease, G4DNAElectronSolvation, 39 G4DNAChargeIncrease, G4DNAElectronSolvation, G4DNAMolecularDissociation,
401 G4DNASecondOrderReaction, G4DNAElectronHoleR 40 G4DNASecondOrderReaction, G4DNAElectronHoleRecombination,
402 G4DNABrownianTransportation : replaced hardw 41 G4DNABrownianTransportation : replaced hardwired process-sub-types
403 with enum values introduced in the new class 42 with enum values introduced in the new class G4LowEnergyEmProcessSubType
404 43
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 44 18-07-2021, V. Ivanchenko, emdna-V10-07-11
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati << 45 - G4DNABohrExcitationModel2, G4DNABohrIonisationModel2,
407 G4VLEPSModel - updated interfaces to G4Physi 46 G4VLEPSModel - updated interfaces to G4PhysicsVector
408 47
409 16-07-2021, D. Sakata, emdna-V10-07-10 48 16-07-2021, D. Sakata, emdna-V10-07-10
410 - Fixed initialization error in G4DNAELSEPAEla << 49 - Fixed initialization error in G4DNAELSEPAElasticModel
411 50
412 28-06-2021, G. Cosmo, emdna-V10-07-09 51 28-06-2021, G. Cosmo, emdna-V10-07-09
413 - Fixed compilation error in G4ITMultiNavigato 52 - Fixed compilation error in G4ITMultiNavigator when compiling with c++20
414 enabled. 53 enabled.
415 54
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 55 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07-08
417 - Added new classes G4DNADiracRMatrixExcitatio 56 - Added new classes G4DNADiracRMatrixExcitationModel
418 G4DNAQuinnPlasmonExcitatio 57 G4DNAQuinnPlasmonExcitationModel
419 G4DNARelativisticIonisatio 58 G4DNARelativisticIonisationModel
420 G4DNAPlasmonExcitation 59 G4DNAPlasmonExcitation
421 - Modified G4DNAELSEPAElasticModel for gold 60 - Modified G4DNAELSEPAElasticModel for gold
422 61
423 9-05-2021, H.Tran, tag emdna-V10-07-07 62 9-05-2021, H.Tran, tag emdna-V10-07-07
424 - Add IRT-syn model 63 - Add IRT-syn model
425 64
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 65 16-04-2021, B.Morgan, tag emdna-V10-07-06
427 - Migrate build to modular CMake API 66 - Migrate build to modular CMake API
428 67
429 27-04-2021, H.Tran, tag emdna-V10-07-05 68 27-04-2021, H.Tran, tag emdna-V10-07-05
430 - G4DNAElectronHoleRecombination: added Octree 69 - G4DNAElectronHoleRecombination: added OctreeFinder
431 - G4DNABrownianTransportation: modified AlongS 70 - G4DNABrownianTransportation: modified AlongStepDoIt
432 - added OctreeFinder and IRTUtils 71 - added OctreeFinder and IRTUtils
433 72
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 73 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04
435 - G4DNABornAngle, G4DNARuddAngle - updated pri 74 - G4DNABornAngle, G4DNARuddAngle - updated print method
436 75
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 76 12-03-2021, L.Pandola, tag emdna-V10-07-03
438 - Move DNA-related Unit Tests from lowenergy/t 77 - Move DNA-related Unit Tests from lowenergy/tests to dna/test
439 78
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 79 24-02-2021, G.Cosmo, tag emdna-V10-07-02
441 - Fixed dependency on g4tools, now moved to ex 80 - Fixed dependency on g4tools, now moved to externals module.
442 81
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 82 16-02-2021, W.G.Shin, tag emdna-V10-07-01
444 - G4DNAElectronHoleRecombination 83 - G4DNAElectronHoleRecombination
445 Dissociation channel of electron-hole recomb 84 Dissociation channel of electron-hole recombination moved to
446 G4EmDNAChemistry, _option1, _option2, _optio 85 G4EmDNAChemistry, _option1, _option2, _option3
447 - G4DNAWaterDissociationDisplacer 86 - G4DNAWaterDissociationDisplacer
448 Added the fragment displacement for new diss 87 Added the fragment displacement for new dissociation channel
449 88
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 89 29-10-2020, G.Cosmo, tag emdna-V10-06-12
451 - Fix thread contention on mutable data in G4D 90 - Fix thread contention on mutable data in G4DNAMolecularMaterial; might
452 help resolving observed crashes in MT runs. 91 help resolving observed crashes in MT runs.
453 Some code cleanup. 92 Some code cleanup.
454 93
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 94 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11
456 - G4DNAMolecularMaterial - removed commented l 95 - G4DNAMolecularMaterial - removed commented lines
457 - History file fixed 96 - History file fixed
458 97
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 98 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10
460 - G4DNAMolecularMaterial - attempt to fix nigh 99 - G4DNAMolecularMaterial - attempt to fix nightly problems
461 in chem6 example - do not delete instance of 100 in chem6 example - do not delete instance of the singleton
462 101
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 102 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09
464 - Added dependency on analysis/g4tools in GNUm 103 - Added dependency on analysis/g4tools in GNUmakefile,
465 required after analysis update (analysis-V10 104 required after analysis update (analysis-V10-06-05)
466 105
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 106 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-08
468 - Fixed coverity warning 107 - Fixed coverity warning
469 108
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 109 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-07
471 - Fixed coverity warnings 110 - Fixed coverity warnings
472 - Fix of IRT bug 111 - Fix of IRT bug
473 (protection for the crash induced by empty re 112 (protection for the crash induced by empty reaction set)
474 113
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 114 28-05-2020, B.Morgan, tag emdna-V10-06-06
476 - Add missing G4analysismng module dependency 115 - Add missing G4analysismng module dependency to G4emdna-utils
477 116
478 20-05-20: W.G.Shin emdna-V10-06-05 117 20-05-20: W.G.Shin emdna-V10-06-05
479 - Revised displacement of OH radicals of B1A1 118 - Revised displacement of OH radicals of B1A1 dissociation
480 based on momentum conservation in G4DNAWaterDi 119 based on momentum conservation in G4DNAWaterDissociationDisplacer class
481 - Added missing History 120 - Added missing History
482 121
483 26-04-20: W.G.Shin emdna-V10-06-04 122 26-04-20: W.G.Shin emdna-V10-06-04
484 - Fixed coverity test 123 - Fixed coverity test
485 124
486 15-04-20: G.Cosmo emdna-V10-06-03 125 15-04-20: G.Cosmo emdna-V10-06-03
487 - G4MoleculeDefinition: copy constructor and a 126 - G4MoleculeDefinition: copy constructor and assignment operator
488 are not allowed (as for G4ParticleDefinition 127 are not allowed (as for G4ParticleDefinition). Now deleted.
489 128
490 19-02-20: W.G.Shin emdna-V10-06-02 129 19-02-20: W.G.Shin emdna-V10-06-02
491 - Fixed memory issue on G4DNAMolecularReaction 130 - Fixed memory issue on G4DNAMolecularReactionTable
492 - Revised headeres of IRT classes 131 - Revised headeres of IRT classes
493 132
494 12-02-20: W.G.Shin emdna-V10-06-01 133 12-02-20: W.G.Shin emdna-V10-06-01
495 - Added protections floating point exception i 134 - Added protections floating point exception in G4DNAIRT class
496 135
497 10-01-20: W.G.Shin emdna-V10-06-00 136 10-01-20: W.G.Shin emdna-V10-06-00
498 - Added classes for IRT 137 - Added classes for IRT
499 - Added features in management classes for IRT 138 - Added features in management classes for IRT (G4ITReaction,
500 G4ITModelProcessor ...) 139 G4ITModelProcessor ...)
501 - Added features in G4DNAMolecularReactionTabl 140 - Added features in G4DNAMolecularReactionTable for GFDE
502 - Added molecules of Plante et al. (2017) (Oxy 141 - Added molecules of Plante et al. (2017) (Oxygen, O2, O3, HO2)
503 142
504 15-11-19: G.Cosmo emdna-V10-05-11 143 15-11-19: G.Cosmo emdna-V10-05-11
505 - Fixed cases of implicit type conversions fro 144 - Fixed cases of implicit type conversions from size_t to G4int.
506 145
507 8-11-19: HT, tag emdna-V10-05-10 146 8-11-19: HT, tag emdna-V10-05-10
508 - Fixed the exception divide by zero of diffus 147 - Fixed the exception divide by zero of diffusionCoefficient in
509 G4DNABrownianTransportation::AlongStepGetPhysi 148 G4DNABrownianTransportation::AlongStepGetPhysicalInteractionLength
510 for the case of static molecules (DNA) (diffus 149 for the case of static molecules (DNA) (diffusionCoefficient = 0)
511 150
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 151 24-10-19: J.Apostolakis, tag emdna-V10-05-09
513 - Enabled G4ItNavigator{1,2} to flag if it enc 152 - Enabled G4ItNavigator{1,2} to flag if it encounters new type
514 of external physical volume (meant for adapt 153 of external physical volume (meant for adapting external navigators)
515 154
516 19-10-19: WGS, SI, tag emdna-V10-05-08 155 19-10-19: WGS, SI, tag emdna-V10-05-08
517 - Added new model G4DNAELSEPAElasticModel 156 - Added new model G4DNAELSEPAElasticModel
518 157
519 11-10-19: WGS, SI, tag emdna-V10-05-07 158 11-10-19: WGS, SI, tag emdna-V10-05-07
520 - G4DNAOneStepThermalizationModel.* : 159 - G4DNAOneStepThermalizationModel.* :
521 added Kreipl and Meesungnoen amorphous ice mod 160 added Kreipl and Meesungnoen amorphous ice models
522 - G4DNAWaterDissociationDisplacer* : updated 161 - G4DNAWaterDissociationDisplacer* : updated
523 162
524 03-06-2019, MK, tag emdna-V10-05-06 163 03-06-2019, MK, tag emdna-V10-05-06
525 - Fix GCC9 warnings 164 - Fix GCC9 warnings
526 165
527 26-03-2019, HT, tag emdna-V10-05-05 166 26-03-2019, HT, tag emdna-V10-05-05
528 - Added G4DNAMolecule 167 - Added G4DNAMolecule
529 168
530 10-03-2019, MK, tag emdna-V10-05-04 169 10-03-2019, MK, tag emdna-V10-05-04
531 - Fix reaction site issue 170 - Fix reaction site issue
532 - Chemistry: clarify pointer ownership, clean 171 - Chemistry: clarify pointer ownership, clean code
533 172
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 173 11-03-2019, G.Cosmo, tag emdna-V10-05-03
535 - Fixed typos in printouts in G4MolecularConfi 174 - Fixed typos in printouts in G4MolecularConfiguration, G4VITRestDiscreteProcess,
536 G4VITRestProcess, G4DNAElectronHoleRecombina 175 G4VITRestProcess, G4DNAElectronHoleRecombination.
537 176
538 18-01-2019, HT, tag emdna-V10-05-02 177 18-01-2019, HT, tag emdna-V10-05-02
539 - Transformed the exception into warning in G4 178 - Transformed the exception into warning in G4DNAMolecularDissociation
540 179
541 28-12-2018, MK, tag emdna-V10-05-01 180 28-12-2018, MK, tag emdna-V10-05-01
542 DEV-300 : G4DNAChemistryManager clarify pointe 181 DEV-300 : G4DNAChemistryManager clarify pointer ownership
543 182
544 05-01-2019, HT, tag emdna-V10-05-00 183 05-01-2019, HT, tag emdna-V10-05-00
545 - moved the checking position of track status 184 - moved the checking position of track status
546 in G4ITStepProcessor::SetInitialStep() 185 in G4ITStepProcessor::SetInitialStep()
547 186
548 01-09-2018, SI, tag emdna-V10-04-10 187 01-09-2018, SI, tag emdna-V10-04-10
549 renamed tag 188 renamed tag
550 189
551 01-09-2018, SI, tag emdna-v10-04-09 190 01-09-2018, SI, tag emdna-v10-04-09
552 - bugzilla 2084 191 - bugzilla 2084
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id 192 https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2084
554 193
555 30-07-2018, SI, tag emdna-V10-04-08 194 30-07-2018, SI, tag emdna-V10-04-08
556 - included upper energy limit of models (2) 195 - included upper energy limit of models (2)
557 196
558 29-07-2018, SI, tag emdna-V10-04-07 197 29-07-2018, SI, tag emdna-V10-04-07
559 - included upper energy limit of models 198 - included upper energy limit of models
560 199
561 01-07-2018, SI, tag emdna-V10-04-06 200 01-07-2018, SI, tag emdna-V10-04-06
562 - added protection in Auger emission 201 - added protection in Auger emission
563 202
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 203 30-06-2018, MS, ZF, SI tag emdna-V10-04-05
565 - updated Si mass in G4DNAGenericIonsManager 204 - updated Si mass in G4DNAGenericIonsManager
566 205
567 22-06-2018, SI tag emdna-V10-04-04 206 22-06-2018, SI tag emdna-V10-04-04
568 - fixed warnings in lepts models 207 - fixed warnings in lepts models
569 208
570 14-05-2018, SI tag emdna-V10-04-03 209 14-05-2018, SI tag emdna-V10-04-03
571 - chemistry update by Mathieu 210 - chemistry update by Mathieu
572 211
573 01-05-2018, SI tag emdna-V10-04-02 212 01-05-2018, SI tag emdna-V10-04-02
574 - chemistry update by Mathieu 213 - chemistry update by Mathieu
575 214
576 09-02-2018, M.Asai tag emdna-V10-04-01 215 09-02-2018, M.Asai tag emdna-V10-04-01
577 - G4DNAMolecularMaterial.cc : 216 - G4DNAMolecularMaterial.cc :
578 GetDensityTableFor() and GetNumMolPerVolTabl 217 GetDensityTableFor() and GetNumMolPerVolTableFor() methods are accepted
579 at G4State_Init rather than G4State_Idle. 218 at G4State_Init rather than G4State_Idle.
580 - Co-works with run-V10-04-01 and global-V10-0 219 - Co-works with run-V10-04-01 and global-V10-04-01.
581 220
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 221 21-12-2017, G.Cosmo tag emdna-V10-04-00
583 - Fixed self-consistency in headers (missing # 222 - Fixed self-consistency in headers (missing #include) in G4IosFlagsSaver,
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff 223 G4KDNode, G4MoleculeIterator and G4LEPTSDiffXS.
585 Fixed spurious definition of G4IT namespace 224 Fixed spurious definition of G4IT namespace in G4ITMultiNavigator header.
586 Thanks to Raphael Isemann for reporting thes 225 Thanks to Raphael Isemann for reporting these.
587 226
588 01-11-2017, MK tag emdna-V10-03-30 227 01-11-2017, MK tag emdna-V10-03-30
589 - remove models/test directory 228 - remove models/test directory
590 229
591 31-10-2017, JA ( tag missing ) 230 31-10-2017, JA ( tag missing )
592 - G4KDNode.hh: Add missing included file - nee 231 - G4KDNode.hh: Add missing included file - needed in test
593 232
594 16-08-2017, SI tag emdna-V10-03-28 233 16-08-2017, SI tag emdna-V10-03-28
595 - updated variable types in models 234 - updated variable types in models
596 235
597 10-08-2017, SI tag emdna-V10-03-27 236 10-08-2017, SI tag emdna-V10-03-27
598 - test 237 - test
599 238
600 10-08-2017, SI tag emdna-V10-03-26 239 10-08-2017, SI tag emdna-V10-03-26
601 - same as previous 240 - same as previous
602 241
603 09-08-2017, SI tag emdna-V10-03-25 242 09-08-2017, SI tag emdna-V10-03-25
604 - same as previous 243 - same as previous
605 244
606 09-08-2017, SI tag emdna-V10-03-24 245 09-08-2017, SI tag emdna-V10-03-24
607 - G4DNAEmfietzoglouIonisationModel: added prot 246 - G4DNAEmfietzoglouIonisationModel: added protection for out of bound access
608 247
609 03-08-2017, VI tag emdna-V10-03-23 248 03-08-2017, VI tag emdna-V10-03-23
610 - G4DNAExcitation, G4DNAIonisation - make cohe 249 - G4DNAExcitation, G4DNAIonisation - make coherent model initialisation
611 250
612 28-07-2017, SI, tag emdna-V10-03-22 251 28-07-2017, SI, tag emdna-V10-03-22
613 - added stationary mode flag to CPA100 ionisat 252 - added stationary mode flag to CPA100 ionisation.
614 253
615 04-07-2017, SI, tag emdna-V10-03-21 254 04-07-2017, SI, tag emdna-V10-03-21
616 - added tagging of atom. deexc. products in io 255 - added tagging of atom. deexc. products in ionisation models.
617 256
618 31-05-2017, SM, tag emdna-V10-03-20 257 31-05-2017, SM, tag emdna-V10-03-20
619 - Correct windows issues with path of diff. CS 258 - Correct windows issues with path of diff. CS data file.
620 259
621 31-05-2017, SI, tag emdna-V10-03-19 260 31-05-2017, SI, tag emdna-V10-03-19
622 - roll-back (Windows issues with previous tag) 261 - roll-back (Windows issues with previous tag)
623 262
624 24-05-2017, SI, tag emdna-V10-03-18 263 24-05-2017, SI, tag emdna-V10-03-18
625 - added tagging of atom. deexc. products in io 264 - added tagging of atom. deexc. products in ionisation models.
626 265
627 11-05-2017, VI tag emdna-V10-03-17 266 11-05-2017, VI tag emdna-V10-03-17
628 - fix for gcc 7.1 warnings in G4DNACrossSectio 267 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
629 268
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 269 10-05-2017, NL, MK, SI, tag emdna-V10-03-16
631 - fix for gcc 7.1 warnings in G4DNACrossSectio 270 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
632 271
633 03-05-2017, SM, tag emdna-V10-03-15 272 03-05-2017, SM, tag emdna-V10-03-15
634 - add the new G4DNADummyModel and allow the co 273 - add the new G4DNADummyModel and allow the combination of G4VEmModel and G4VDNAModel in G4DNAModelInterface.
635 274
636 27-04-2017, SM, tag emdna-V10-03-14 275 27-04-2017, SM, tag emdna-V10-03-14
637 - correct small typo mistakes. 276 - correct small typo mistakes.
638 277
639 27-04-2017, SM, tag emdna-V10-03-13 278 27-04-2017, SM, tag emdna-V10-03-13
640 - update Models/G4DNAModelInterface to correct 279 - update Models/G4DNAModelInterface to correctly use G4DNAMolecularMaterial
641 280
642 10-03-2017, MK, tag emdna-V10-03-12 281 10-03-2017, MK, tag emdna-V10-03-12
643 - update utils/GNUmakefile 282 - update utils/GNUmakefile
644 283
645 13-02-2017, MK, tag emdna-V10-03-11 284 13-02-2017, MK, tag emdna-V10-03-11
646 - G4DNAMolecularMaterial: update doxygen doc 285 - G4DNAMolecularMaterial: update doxygen doc
647 286
648 13-02-2017, MK, tag emdna-V10-03-10 287 13-02-2017, MK, tag emdna-V10-03-10
649 - G4DNAMolecularMaterial: 288 - G4DNAMolecularMaterial:
650 remove newly introduced methods, add fatal e 289 remove newly introduced methods, add fatal exception if used
651 add doxygen documentation 290 add doxygen documentation
652 291
653 10-02-2017, MK, tag emdna-V10-03-09 292 10-02-2017, MK, tag emdna-V10-03-09
654 - Introducing G4PhysChemIO 293 - Introducing G4PhysChemIO
655 - Move call to G4TrackList::Pop(track) from G4 294 - Move call to G4TrackList::Pop(track) from G4ITTrackingManager
656 to G4ITTrackHolder. And make sure track stat 295 to G4ITTrackHolder. And make sure track status is set to fStopAndKill
657 when G4ITTrackHolder::PushToKill is called. 296 when G4ITTrackHolder::PushToKill is called.
658 297
659 09-02-2017, MK, tag emdna-V10-03-08 298 09-02-2017, MK, tag emdna-V10-03-08
660 - G4KDNode.hh: remove unused G4ThreeVector hea 299 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation 300 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t 301 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization 302 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K 303 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665 304
666 24-01-2017, SM, tag emdna-V10-03-07 305 24-01-2017, SM, tag emdna-V10-03-07
667 - add a ifdef to remove a warning (windows onl 306 - add a ifdef to remove a warning (windows only) related to the use of several levels of map.
668 307
669 23-01-2017, SM, tag emdna-V10-03-06 308 23-01-2017, SM, tag emdna-V10-03-06
670 - add missing G4DNAModelInterface files (.hh a 309 - add missing G4DNAModelInterface files (.hh and .cc) to the source.cmake
671 310
672 23-01-2017, SM CV, tag emdna-V10-03-05 311 23-01-2017, SM CV, tag emdna-V10-03-05
673 - add new G4DNAPTB* classes and the structure 312 - add new G4DNAPTB* classes and the structure of the new material management system
674 313
675 14-01-2017, MK, tag emdna-V10-02-37 314 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingMan 315 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction 316 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Schedule 317 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679 318
680 28-12-2016, SI, tag emdna-V10-03-04 319 28-12-2016, SI, tag emdna-V10-03-04
681 - extended upper energy limit of protons for 320 - extended upper energy limit of protons for
682 G4DNARuddIonisationExtendedModel 321 G4DNARuddIonisationExtendedModel
683 322
684 27-12-2016, SI, tag emdna-V10-03-03 323 27-12-2016, SI, tag emdna-V10-03-03
685 - updated references of CPA100 classes 324 - updated references of CPA100 classes
686 325
687 23-12-2016, SI, tag emdna-V10-03-02 326 23-12-2016, SI, tag emdna-V10-03-02
688 - updated sources.cmake 327 - updated sources.cmake
689 328
690 23-12-2016, SI, tag emdna-V10-03-01 329 23-12-2016, SI, tag emdna-V10-03-01
691 - commit of first CPA100 classes, part 2 330 - commit of first CPA100 classes, part 2
692 331
693 21-12-2016, SI, tag emdna-V10-03-00 332 21-12-2016, SI, tag emdna-V10-03-00
694 - commit of first CPA100 classes 333 - commit of first CPA100 classes
695 334
696 27-11-2016, MK, tag emdna-V10-02-36 335 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 336 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 337 - G4DNADamages -> G4DNADamage
699 338
700 17-11-2016, MK, tag emdna-V10-02-35 339 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 340 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 341
703 16-11-2016, MK, tag emdna-V10-02-34 342 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat 343 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 344 displacement types can be thread shared
706 - G4TrackState: Move implementation of static 345 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 346 G4VTrackStateID::Create() to cc file - windows crash
708 347
709 15-11-2016, MK, tag emdna-V10-02-33 348 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 349 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 350
712 14-11-2016, MK, tag emdna-V10-02-32 351 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t 352 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 353 windows platforms
715 354
716 14-11-2016, MK, tag emdna-V10-02-31 355 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: 356 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 357 tag init constexpr factor with number rather than expression
719 358
720 14-11-2016, MK, tag emdna-V10-02-30 359 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 360 - Use CLHEP::pi instead of M_PI
722 361
723 14-11-2016, MK, tag emdna-V10-02-29 362 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 363 - Correct bracket enclosing
725 364
726 14-11-2016, MK, tag emdna-V10-02-28 365 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 366 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 367 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 368 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 369 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 370 - Adds and use G4CTCounter
732 371
733 02-11-2016, MK, tag emdna-V10-02-27 372 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom 373 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 374 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo 375 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety 376 computeStep & computeSafety
738 377
739 07-08-2016, SI, tag emdna-V10-02-26 378 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 379 - added stationnary mode to sub-excitation electron processes
741 380
742 23-06-2016, MK 381 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 382 - G4Scheduler: move G4IosFlagsSaver to Process()
744 383
745 3-06-2016, MK, tag emdna-V10-02-25 384 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 385 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 386 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 387 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 388
750 3-06-2016, MK, tag emdna-V10-02-24 389 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 390 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 391 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 392 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 393 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 394 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 395 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc 396 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 397 model used for another part than e-
759 398
760 1-06-2016, MK, tag emdna-V10-02-23 399 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 400 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 401 logic for interface with physics models
763 402
764 31-05-2016, MK, tag emdna-V10-02-22 403 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 404 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 405
767 28-05-2016, MK, tag emdna-V10-02-21 406 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 407 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 408 one of the previous tags
770 409
771 19-05-2016, MK, tag emdna-V10-02-20 410 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 411 - G4ITNavigator: remove warnings on gcc6.1
773 412
774 17-05-2016, MK, tag emdna-V10-02-19 413 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 414 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 415 correct model and process names for solvation
777 416
778 12-05-2016, MK, tag emdna-V10-02-18 417 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: 418 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 419 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne 420 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 421 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 422 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 423 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 424 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 425 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim 426 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 427 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 428 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 429 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 430 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 431 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 432 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 433 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 434 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 435 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 436 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 437 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 438 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 439 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 440 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 441 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv 442 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 443 created; otherwise, the primary electron is killed
805 444
806 30-04-2016, MK, tag emdna-V10-02-17 445 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 446 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 447
809 30-04-2016, MK, tag emdna-V10-02-16 448 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 449 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p 450 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 451 unregistered molecule definition
813 452
814 22-04-2016, MK, tag emdna-V10-02-15 453 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 454 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 455 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 456
818 22-04-2016, MK, tag emdna-V10-02-14 457 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit 458 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 459 remove usage of internal energy boundaries
821 460
822 19-03-2016, SI, tag emdna-V10-02-13 461 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 462 - added nrj extensibility to SR and USR models
824 463
825 11-03-2016, SI, tag emdna-V10-02-12 464 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 465 -roll back to files in emdna-V10-02-06
827 466
828 10-03-2016, SI, tag emdna-V10-02-11 467 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 468 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 469 and G4DNAScreenedRutherfordElasticModel
831 470
832 10-03-2016, SI, tag emdna-V10-02-10 471 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 472 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 473
835 07-03-2016, SI, tag emdna-V10-02-09 474 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 475 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 476 of G4DNAUeharaScreenedRutherfordElasticModel
838 477
839 06-03-2016, SI, tag emdna-V10-02-08 478 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 479 -removed useless G4Pow declaration
841 480
842 04-03-2016, SI, tag emdna-V10-02-07 481 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 482 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 483 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 484
846 02-03-2016, SI, tag emdna-V10-02-06 485 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 486 -replaced std::exp by G4Exp
848 487
849 02-03-2016, SI, tag emdna-V10-02-05 488 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 489 -replaced std::exp by G4Exp
851 490
852 02-03-2016, SI, tag emdna-V10-02-04 491 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 492 -replaced std::exp by G4Exp
854 493
855 01-03-2016, SI, tag emdna-V10-02-03 494 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 495 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 496 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 497 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 498 by S. Okada (KEK, JP)
860 499
861 17-02-2016, MK, tag emdna-V10-02-02 500 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 501 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 502
864 16-12-2015, SI, tag emdna-V10-02-01 503 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: 504 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 505 added protection on energy for interpolation method change
867 506
868 16-12-2015, SI, tag emdna-V10-02-00 507 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add 508 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 509 energy
871 510
872 13-11-2015, MK, tag emdna-V10-01-55 511 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 512 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 513 file
875 514
876 10-11-2015, MK, tag emdna-V10-01-54 515 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 516 * remove unused variables
878 517
879 10-11-2015, MK, tag emdna-V10-01-53 518 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 519 * Coverity fixes
881 520
882 06-11-2015, MK, tag emdna-V10-01-52 521 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 522 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 523
885 06-11-2015, MK, tag emdna-V10-01-51 524 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 525 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 526 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 527
889 06-11-2015, MK, tag emdna-V10-01-50 528 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 529 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 530 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 531 * Add G4ITStepProcessorState_Lock.hh
893 532
894 06-11-2015, MK, tag emdna-V10-01-49 533 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 534 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 535 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 536 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 537 but in the source file - causing crashes on windows
899 538
900 04-11-2015, MK, tag emdna-V10-01-48 539 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 540 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 541 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 542 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 543 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 544 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 545 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 546 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 547 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 548 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using 549 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 550 all dissociation products have been defined (they will just not be taken
912 into account) 551 into account)
913 * G4DNAMolecularReactionTable: delete reaction 552 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 553
915 03-11-2015, MK, tag emdna-V10-01-47 554 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 555 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac 556 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 557 the call
919 558
920 03-11-2015, MK, tag emdna-V10-01-46 559 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 560 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 561 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 562 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 563 (causing navigator complains)
925 564
926 03-11-2015, MK, tag emdna-V10-01-45 565 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 566 * G4Serialize: Add definition in header for G4String
928 567
929 02-11-2015, MK, tag emdna-V10-01-44 568 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 569 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 570 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 571 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 572 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon 573 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 574 -> G4MolecularConfMan is taking care of this
936 575
937 30-10-2015, MK, tag emdna-V10-01-43 576 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter 577 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 578 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 579 * Unit tests corrected
941 * G4VITDiscreteProcess added 580 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 581 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 582 * Intermediate update for 10.2 release
944 583
945 27-10-2015, MK, tag emdna-V10-01-42 584 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 585 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 586
948 26-10-2015, MK, tag emdna-V10-01-41 587 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 588 * Sanche model: try to solve std::vector out of bounds
950 589
951 23-10-2015, MK, tag emdna-V10-01-40 590 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 591 * remove all CLHEP::shared_ptr usage
953 592
954 23-10-2015, CV, SM, tag emdna-V10-01-39 593 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel 594 * Addded base class G4VDNAPTBModel
956 595
957 28-09-2015, SI, tag emdna-V10-01-38 596 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 597 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 598
960 19-09-2015, MK, tag emdna-V10-01-37 599 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 600 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 601 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 602
964 17-09-2015, MK, tag emdna-V10-01-36 603 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 604 * G4MoleculeGun: Remove compilation warnings
966 605
967 04-09-2015 MK, tag emdna-V10-01-35 606 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 607 * Fix G4MoleculeGun compilation errors
969 608
970 03-09-2015 SI, tag emdna-V10-01-34 609 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 610 * Added stationary regime to all inelastic models
972 611
973 19-08-2015, MK 612 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 613 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 614 - compatible with both Smoluchowski & Gillespie models
976 615
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 616 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 617 * Added easier handling of cumulative proba. in SR elastic models
979 618
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 619 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 620 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 621 declaration of G4MoleculeShoot.
983 622
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 623 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 624 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 625 declaration of G4MoleculeShootMessenger.
987 626
988 12-08-2015, MK, tag emdna-V10-01-29 627 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 628 * Add G4Serialize in the build tree temporarily
990 629
991 12-08-2015, MK, tag emdna-V10-01-28 630 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 631 * G4Serialize added
993 632
994 12-08-2015, MK 633 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 634 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 635
997 24-07-2015, MK 636 24-07-2015, MK
998 - G4MolecularReactionTable 637 - G4MolecularReactionTable
999 * Add get methods 638 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 639 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 640 * Molecule gun : place randomly in a box
1002 641
1003 15-07-2015, MK 642 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA 643 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 644 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 645 * processes & models initialisation again
1007 646
1008 15-07-2015, MK, tag emdna-V10-01-26 647 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 648 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 649 * add macro to prevent warnings in non-verbose mode
1011 650
1012 11-07-2015, MK, tag emdna-V10-01-25 651 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 652 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 653 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 654
1016 10-07-2015, MK, tag emdna-V10-01-24 655 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 656 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 657 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 658 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 659 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 660
1022 08-07-2015, MK, tag emdna-V10-01-23 661 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 662 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 663 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 664 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose 665 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 666 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 667 - G4MoleculeDefinition:
1029 ::SetFormatedName added 668 ::SetFormatedName added
1030 ::NewConfiguration methods added 669 ::NewConfiguration methods added
1031 ::NewConfiguration added 670 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 671 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 672 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 673 ::Finalize added
1035 - G4MolecularConfiguration: 674 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 675 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 676 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 677 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec 678 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula 679 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 680 than molecule models
1042 - G4Molecule add constructor where only G4Mol 681 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 682 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 683 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 684 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 685 - G4DNAElectronHoleRecombination added
1047 686
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 687 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c 688 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 689 fasterCode usage on shell selection.
1051 690
1052 26-06-2015, MK 691 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to 692 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 693 warning message description
1055 694
1056 16-06-205, MK 695 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 696 - Add G4Scheduler::GetGun()
1058 697
1059 16-06-2015, MK, tag emdna-V10-01-21 698 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 699 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 700 - G4DNAIonElasticModel: clean and fix double free
1062 701
1063 12-06-2015, MK, tag emdna-V10-01-20 702 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 703 - remove virtual keyword from G4IT::GetPosition()
1065 704
1066 04-06-2015, MK 705 04-06-2015, MK
1067 - just cosmetics 706 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 707 - remove virtual keyword from G4IT::operator[]
1069 708
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 709 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 710 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 711 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 712 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 713 - Fully qualify std::string elsewhere as needed to adjust
1075 714
1076 22-05-2015, John Allison, tag emdna-V10-01-18 715 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 716 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 717 "G4Threading::IsMasterThread()".
1079 718
1080 17-05-2015, MK, tag emdna-V10-01-17 719 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 720 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 721 - Correct sources.cmake
1083 - Born headears: includes both model versions 722 - Born headears: includes both model versions when proxy header is included
1084 723
1085 16-05-2015, MK, tag emdna-V10-01-16 724 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 725 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 726 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 727 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 728 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 729 - Add G4DNABornExcitationModel2 (temporary)
1091 730
1092 15-05-2015, MK, tag emdna-V10-01-15 731 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 732 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 733
1095 14-05-2015, MK, tag emdna-V10-01-14 734 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 735 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 736
1098 14-05-2015, MK, tag emdna-V10-01-13 737 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 738 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 739 - G4ITReaction: try to solve compilation error
1101 740
1102 12-05-2015, MK, tag emdna-V10-01-12 741 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 742 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 743
1105 12-05-2015, MK, tag emdna-V10-01-11 744 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 745 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 746
1108 11-05-2015, MK, tag emdna-V10-01-10 747 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 748 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 749 +Add GetPartialCrossSection
1111 +Code cleaning 750 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 751 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 752 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 753 - G4DNAChemistryManager::GetValue(...) added
1115 754
1116 02-05-2015, MK 755 02-05-2015, MK
1117 - Update G4TrackState & related classes 756 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: 757 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian 758 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 759 +comment useless method
1121 - G4Scheduler: 760 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS 761 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime 762 +remove fTmpEndTime
1124 +Add CanICarryOn 763 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 764 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 765
1127 18-03-2015, MK, tag emdna-V10-01-08 766 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 767 - Same as before, just add the missing History file
1129 768
1130 18-03-2015, MK, tag emdna-V10-01-07 769 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 770 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 771 instead of a reference
1133 772
1134 12-02-2015, MK, tag emdna-V10-01-06 773 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 774 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 775 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi 776 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 777
1139 11-02-2015, MK, tag emdna-V10-01-05 778 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 779 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 780 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 781 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 782
1144 16-01-2015, SI, tag emdna-V10-01-04 783 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 784 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 785
1147 14-12-2014, MK, tag emdna-V10-01-03 786 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 787 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval 788 - ScreenRutherfordElastic: correct retrieval of water density
1150 789
1151 13-12-2014, SI, tag emdna-V10-01-02 790 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 791 - Added elastic model by H. Tran.
1153 792
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 793 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 794 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 795 to allow for compilation on Linux/clang-3.5.
1157 796
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 797 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 798 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 799 include missing files:
1161 G4ITTransportationManager.icc 800 G4ITTransportationManager.icc
1162 G4KDNode.icc 801 G4KDNode.icc
1163 G4KDTree.icc 802 G4KDTree.icc
1164 G4MoleculeFinder.hh 803 G4MoleculeFinder.hh
1165 804
1166 01-12-2014, MK, tag emdna-V10-00-63 805 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 806 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 807 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 808 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 809 when the particle has reached a boundary
1171 810
1172 28-11-2014, MK, tag emdna-V10-00-62 811 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 812 - Retag
1174 813
1175 28-11-2014, MK, tag emdna-V10-00-61 814 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 815 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 816 - Fix Brownian navigation
1178 - Some fixes related to scheduler 817 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 818 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 819 - Enhance comments
1181 820
1182 24-11-2014, MK, tag emdna-V10-00-60 821 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 822 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 823
1185 24-11-2014, MK, tag emdna-V10-00-59 824 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 825 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 826 - Remove useless verbose
1188 - Try to compile on all platforms 827 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 828 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 829 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 830 Just registering constructor is enough to initialized the chemistry
1192 831
1193 24-11-2014, MK, tag emdna-V10-00-58 832 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 833 - G4FastList: remove all friend declarations
1195 834
1196 22-11-2014, MK, tag emdna-V10-00-57 835 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 836 - Another attempt to compile G4FastList on all platforms
1198 837
1199 22-11-2014, MK, tag emdna-V10-00-56 838 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 839 - Attempt to compile G4FastList on all platforms
1201 840
1202 21-11-2014, MK, tag emdna-V10-00-55 841 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 842 - Attempt to compile G4FastList with clang
1204 843
1205 21-11-2014, MK, tag emdna-V10-00-54 844 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 845 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou 846 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 847 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 848 - Update G4ITNavigator2 to the G4Navigator of John
1210 849
1211 21-11-2014, MK, tag emdna-V10-00-53 850 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b 851 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 852 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 853 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time 854 is false by default --> uses the random time computation for crossing
1216 boundaries 855 boundaries
1217 856
1218 20-11-2014, SI, tag emdna-V10-00-52 857 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 858 - Improved error message for missing data in PW elastic model
1220 859
1221 08-11-2014, MK, tag emdna-V10-00-51 860 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 861 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 862 when the asked item is not found
1224 863
1225 03-11-2014 MK, tag emdna-V10-00-50 864 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 865 - correct track creation by G4MoleculeGunMessenger
1227 866
1228 03-11-2014 MK, tag emdna-V10-00-49 867 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 868 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 869 - Correct a bug in G4MoleculeGun
1231 870
1232 28-10-2014 PA, tag emdna-V10-00-48 871 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 872 - correct compilation warnings
1234 873
1235 28-10-2014 PA, tag emdna-V10-00-47 874 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 875 - correct compilation warnings
1237 876
1238 28-10-2014 PA, tag emdna-V10-00-46 877 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 878 - correction in sources.cmake
1240 879
1241 28-10-2014 PA, tag emdna-V10-00-45 880 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 881 - retag to add LEPTS
1243 882
1244 28-10-2014 PA, tag emdna-V10-00-44 883 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 884 - add LEPTS
1246 885
1247 25-10-2014 MK, tag emdna-V10-00-43 886 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 887 - remove useless G4VITScheduler
1249 888
1250 25-10-2014 MK, tag emdna-V10-00-42 889 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 890 - correct warnings
1252 891
1253 24-10-2014 MK, tag emdna-V10-00-41 892 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 893 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 894 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 895 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 896 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 897 - G4ITFinder added
1259 - G4VITTrackHolder added 898 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 899 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 900 - code cleaned + useless classes removed
1262 901
1263 24-10-2014 MK, tag emdna-V10-00-40 902 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 903 - G4ITStepManager: remove verbose at closure time
1265 904
1266 21-10-2014 MK, tag emdna-V10-00-39 905 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 906 - try to solve crash at closure time
1268 907
1269 21-10-2014 MK, tag emdna-V10-00-38 908 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 909 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 910 table when deleted
1272 - update disclaimer 911 - update disclaimer
1273 912
1274 17-10-2014 MK, tag emdna-V10-00-37 913 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 914 - clean code
1276 - G4ITStepManager: one can ask why simulation 915 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 916 - remove useless verbose
1278 917
1279 17-10-2014 MK, tag emdna-V10-00-36 918 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 919 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 920 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 921 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 922
1284 10-10-2014 MK, tag emdna-V10-00-35 923 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 924 Avoid use of std::map at the application level in TimeStepAction
1286 925
1287 07-10-2014 MK, tag emdna-V10-00-34 926 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 927 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 928 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 929 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 930
1292 07-10-2014 MK, tag emdna-V10-00-33 931 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 932 Initialize G4ITStepManager in G4DNAChemistryManager
1294 933
1295 17-09-2014 MK, tag emdna-V10-00-32 934 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 935 Add G4ITStepManager + messenger
1297 Tag before architecture change 936 Tag before architecture change
1298 937
1299 12-07-2014 SI, tag emdna-V10-00-31 938 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 939 Removed obsolete class for electron excitation
1301 940
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 941 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 942 - Get rid of obsolete 'register' keyword in code.
1304 943
1305 05-06-2014 SI, tag emdna-V10-00-29 944 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 945 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D 946 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 947 G4GenericIon usage
1309 - requires G4EMLOW6.39 948 - requires G4EMLOW6.39
1310 949
1311 04-06-2014 MK, tag emdna-V10-00-28 950 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 951 Remove directory management/include/impl
1313 Prepare for release 952 Prepare for release
1314 953
1315 04-06-2014 MK, tag emdna-V10-00-27 954 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 955 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 956 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 957 Avoid usage of molecule iterators as pointers
1319 958
1320 03-06-2014 SI, tag emdna-V10-00-26 959 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 960 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 961
1323 28-05-2014 VI, SI tag emdna-V10-00-25 962 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 963 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 964 Ionisation models switch to use angular generator
1326 interface 965 interface
1327 966
1328 12.05.2014 MK, tag emdna-V10-00-24 967 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 968 Try to remove warnings 4
1330 969
1331 12.05.2014 MK, tag emdna-V10-00-23 970 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 971 Try to remove warnings 3
1333 972
1334 12.05.2014 MK, tag emdna-V10-00-22 973 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 974 Try to remove warnings 2
1336 975
1337 12.05.2014 MK, tag emdna-V10-00-21 976 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 977 Try to remove warnings
1339 978
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 979 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx 980 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 981 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 982 G4EMLOW6.38 needed
1344 983
1345 07-04-2014 SI tag emdna-V10-00-19 984 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 985 Changed faster method interpolation in
1347 G4DNABornIonisationModel 986 G4DNABornIonisationModel
1348 987
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 988 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 989 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 990 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 991 Corrected order of inclusion of some headers and use of <>/"".
1353 992
1354 04-04-2014 MK tag emdna-V10-00-17 993 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 994 Try to solve warnings when G4VERBOSE is off
1356 995
1357 02-04-2014 MK tag emdna-V10 996 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 997 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 998
1360 02-04-2014 MK tag emdna-V10 999 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 1000 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 1001
1363 02-04-2014 MK tag emdna-V10 1002 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 1003 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 1004 -> this part is withdrawn for now
1366 1005
1367 02-04-2014 MK tag emdna-V10 1006 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 1007 - version 2 : try fixing the build error on mac
1369 1008
1370 02-04-2014 MK tag emdna-V10 1009 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 1010 - version 1 : try to fix build errors and warnings on mac
1372 1011
1373 02-04-2014 MK tag emdna-V10 1012 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 1013 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 1014 (G4MemStat & G4MolecularConfiguration)
1376 1015
1377 02-04-2014 MK tag emdna-V10 1016 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 1017 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 1018 (problem coming from having as a friend class a template argument)
1380 1019
1381 02-04-2014 MK tag emdna-V10 1020 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla 1021 - try to fix build error on windows platform
1383 1022
1384 01-04-2014 MK tag emdna-V10 1023 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 1024 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 1025 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 1026
1388 01-04-2014 MK tag emdna-V10 1027 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 1028 - reset CMakeLists.txt
1390 1029
1391 01-04-2014 MK tag emdna-V10 1030 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 1031 - update chemistry
1393 1032
1394 01-04-2014 SI tag emdna-V10-00-05 1033 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 1034 - Modified calculation of secondary kinetic for fast code
1396 1035
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 1036 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 1037 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 1038 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 1039 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 1040
1402 25-03-2014 VS, SI tag emdna-V10-00-03 1041 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 1042 - Added several clear() to vectors for MT
1404 1043
1405 17-03-2014 SI tag emdna-V10-00-02 1044 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc 1045 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 1046 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 1047 to be used with G4EMLOW6.36
1409 1048
1410 12-12-2013 M.K tag emdna-V10-00-01 1049 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 1050 - G4DNAMolecularMaterial: Remove unused variable
1412 1051
1413 12-12-2013 M.K tag emdna-V10-00-00 1052 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to 1053 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 1054 a model is not created at initialisation time
1416 1055
1417 21-11-2013 V.I. tag emdna-V09-06-22 1056 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 1057 - G4ITStepProcessor2 - removed obsolete unused header
1419 1058
1420 01-11-2013 M.K tag emdna-V09-06-21 1059 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 1060 - Correct incorrect singleton check introduced in previous tag
1422 1061
1423 01-11-2013 M.K tag emdna-V09-06-20 1062 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 1063 - Prepare for release bis
1425 1064
1426 01-11-2013 M.K tag emdna-V09-06-19 1065 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 1066 - Prepare for release
1428 1067
1429 10-10-2013 M.K. tag emdna-V09-06-18 1068 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 1069 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 1070
1432 06-10-2013 M.K. tag emdna-V09-06-17 1071 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 1072 - Same as before once again
1434 1073
1435 03-10-2013 M.K. tag emdna-V09-06-16 1074 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 1075 - Same as before
1437 1076
1438 03-10-2013 M.K. tag emdna-V09-06-15 1077 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 1078 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t 1079 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 1080 by the user - stage 1
1442 1081
1443 14-09-2013 M.Asai tag emdna-V09-06-14 1082 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 1083 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 1084 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 1085 with virtual keyword in G4VITProcess.
1447 1086
1448 12-09-2013 M.K. tag emdna-V09-06-13 1087 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 1088 Correction of an inadvertent modification introduced in previous tag
1450 1089
1451 12-09-2013 M.K. tag emdna-V09-06-12 1090 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 1091 Correct bound checks in G4ITManager.icc
1453 1092
1454 16-08-2013 S.I. tag emdna-V09-06-11 1093 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 1094 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 1095
1457 16-08-2013 S.I. tag emdna-V09-06-10 1096 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 1097 Added G4DNAIons
1459 1098
1460 25-06-2013 M.K. tag emdna-V09-06-09 1099 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 1100 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet 1101 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 1102 auto_ptr according to c++ std version
1464 1103
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 1104 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 1105 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 1106 for problem accidentally introduced in previous tag.
1468 1107
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 1108 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 1109 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 1110 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 1111 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 1112 compilation on Windows.
1474 1113
1475 06-06-2013 S.I. tag emdna-V09-06- 1114 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 1115 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 1116 Requires G4EMLOW version 6.33
1478 1117
1479 25-05-2013 M.K. tag emdna-V09-06- 1118 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 1119 *Fix warning compilation in G4KDMap for specific gcc version
1481 1120
1482 24-05-2013 M.K. tag emdna-V09-06- 1121 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi 1122 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 1123 but still not in usage
1485 1124
1486 23-05-2013 M.K. tag emdna-V09-06- 1125 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 1126 * G4KDMap : try fix error on std:ceil call on windows
1488 1127
1489 23-V09-06-03-05-2013 M.K. tag emd 1128 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 1129 * G4KDMap : used deque::iterator
1491 1130
1492 1131
1493 22-05-2013 M.K. tag emdna-V09-06- 1132 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 1133 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 1134 * G4KDMap : pop out elements from map
1496 1135
1497 22-05-2013 M.K. tag emdna-V09-06-00 1136 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global 1137 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager 1138 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 1139 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 1140 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 1141 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 1142 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali 1143 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes 1144 initialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI 1145 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 1146
1508 12-11-2012 M.K tag emdna-V09-05- 1147 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 1148 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 1149 coverity warnings (rev 64993)
1511 1150
1512 06-11-2012 G.Cosmo tag emdna-V09 1151 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 1152 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 1153 for objects in maps...
1515 1154
1516 04-11-2012 M.K. tag emdna-V09-05-33 1155 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 1156 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 1157 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 1158 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 1159 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 1160 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 1161 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 1162 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 1163 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 1164 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 1165 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 1166 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 1167 add "else" before "if" statements and
1529 add variables to avoid ma 1168 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 1169 dna.files : update files (rev 64725)
1531 1170
1532 03-11-2012 S.I. tag emdna-V09-05-32 1171 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 1172 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 1173 classes
1535 1174
1536 24-10-2012 M.K tag emdna-V09 1175 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 1176 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 1177 (previously commented)
1539 1178
1540 23-10-2012 M.K tag emdna-V09 1179 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 1180 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 1181 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 1182
1544 18-10-2012 M.K tag emdna-V09 1183 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 1184 Previous tag did not include history changes
1546 1185
1547 18-10-2012 M.K tag emdna-V09 1186 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 1187 Remove warning
1549 1188
1550 17-10-2012 M.K tag emdna-V09 1189 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 1190 Correct a typo from previous tag
1552 1191
1553 17-10-2012 M.K tag emdna-V09 1192 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 1193 Correct information in headers
1555 Rename G4DNADiffustionControlledM 1194 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 1195 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 1196
1558 01-10-2012 SI, P.Pater tag emdna-V09 1197 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 1198 Force kinetic energy to zero for real killings in models.
1560 1199
1561 12-07-2012 G.Cosmo tag emdna-V09 1200 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 1201 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 1202 constants, in plan to remove implicit inclusion from globals.hh.
1564 1203
1565 11.07.2012 M.K tag emdna-V09 1204 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 1205 Correct warnings introduce in previous tag
1567 1206
1568 11.07.2012 M.K tag emdna-V09 1207 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 1208 Tag to be proposed
1570 1209
1571 25.06.2012 M.K tag emdna-V09-05-21 1210 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 1211 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 1212 Modify molecule's name
1574 1213
1575 21.06.2012 S.I tag emdna-V09-05-20 1214 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte 1215 Update of electron elastic scattering low limit
1577 1216
1578 09.06.2012 M.K tag emdna-V09-05-19 1217 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 1218 Fixed shadowing
1580 1219
1581 04.06.2012 M.K tag emdna-V09-05-18 1220 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 1221 Add G4ITTrackingInteractivity + correct coverity warnings
1583 1222
1584 24.05.2012 M.K tag emdna-V09-05-17 1223 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 1224 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 1225
1587 23.05.2012 M.K tag emdna-V09-05-16 1226 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 1227 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 1228 G4ITStepManager
1590 Prevent call of destructor of G4I 1229 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 1230 G4DNAChemistryManager
1592 1231
1593 23.05.2012 M.K tag emdna-V09-05-15 1232 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 1233 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 1234 when one of its methods is called using a material that is
1596 not defined as a molecule 1235 not defined as a molecule
1597 1236
1598 21.05.2012 M.K tag emdna-V09-05-14 1237 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 1238 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 1239 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 1240 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 1241 Modify all models to use G4DNAMolecularMaterial
1603 1242
1604 14.05.2012 M.K tag emdna-V09-05-13 1243 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 1244 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 1245 Add G4DNADamages
1607 1246
1608 10.05.2012 M.K tag emdna-V09-05-12 1247 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 1248 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 1249 from UserReactionAction::EndProcessing()
1611 1250
1612 08.05.2012 M.K tag emdna-V09-05-11 1251 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 1252 Use inverseErf from CLHEP
1614 1253
1615 03.05.2012 M.K tag emdna-V09-05-10 1254 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 1255 Add erfc function for windows compilator (VC++)
1617 1256
1618 03.05.2012 M.K tag emdna-V09-05-09 1257 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 1258 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 1259
1621 03.05.2012 M.K tag emdna-V09-05-08 1260 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 1261 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 1262 Add new methods in G4ChemistryManager :
1624 - PushMolecule 1263 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 1264 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 1265 Reset() at the end of G4ITStepManager::Process()
1627 1266
1628 30.03.2012 M.K tag emdna-V09-05-07 1267 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 1268 Same as emdna-V09-05-06
1630 1269
1631 30.03.2012 M.K tag emdna-V09-05-06 1270 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 1271 1) Add separate navigator for synchronous tracking
1633 New classes : 1272 New classes :
1634 * G4ITTransportationManager 1273 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 1274 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 1275 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 1276 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 1277 3) Solve bugs with normal and brownian ITTransportation
1639 1278
1640 14.03.2012 M.K tag emdna-V09-05-05 1279 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 1280 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 1281 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 1282 -> become size_t + related changes
1644 * when a poststep process propo 1283 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 1284 => considered as a time, and transportation::computestep
1646 is used 1285 is used
1647 1286
1648 14.03.2012 M.K tag emdna-V09-05-04 1287 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 1288 Fix compilation warning
1650 1289
1651 14.03.2012 M.K tag emdna-V09-05-03 1290 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 1291 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 1292 Fix coverity warnings
1654 1293
1655 18.01.2012 S.I. tag emdna-V09 1294 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 1295 Removal of G4Water* classes in utils
1657 1296
1658 11.01.2012 M.K tag emdna-V09 1297 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 1298 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 1299 concerning the final position of the solvated electron
1661 using Sanche thermalization 1300 using Sanche thermalization
1662 1301
1663 16.12.2011 S.I tag emdna-V09 1302 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 1303 Updated source of cross section file for elastic scattering
1665 1304
1666 25.11.2011 M.K tag emdna-V09 1305 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 1306 Correct a typo in previous tag
1668 1307
1669 25.11.2011 M.K tag emdna-V09 1308 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 1309 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 1310 rather than center of mass in DNAMolecularReaction
1672 1311
1673 21.11.2011 M.K tag emdna-V09 1312 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 1313 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 1314 avoid conflicts with ROOT.
1676 Add short class description (comm 1315 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 1316 in JavaDoc style for doxygen use.
1678 1317
1679 21.11.2011 M.K tag emdna-V09 1318 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1319 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1320 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1321 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1322 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1323 when the time steps returned by the time stepper
1685 and the processes are equal 1324 and the processes are equal
1686 Improve verbose 1325 Improve verbose
1687 1326
1688 21.11.2011 M.K tag emdna-V09 1327 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1328 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1329 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1330 Correct verbose in new models & process
1692 1331
1693 18.11.2011 M.K tag emdna-V09 1332 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl 1333 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1334 in G4DNAChemistryManager
1696 1335
1697 18.11.2011 M.K tag emdna-V09 1336 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1337 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1338 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1339 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1340
1702 15.11.2011 G.Cosmo tag emdna-V09 1341 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1342 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1343 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1344 Windows.
1706 Fixed compilation warning on icc 1345 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1346 G4MolecularDecayTable.cc
1708 1347
1709 10.11.2011 M.K. tag emdna-V09 1348 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1349 Fix a bug in G4DNATransformElectronModel
1711 1350
1712 10.11.2011 M.K. tag emdna-V09 1351 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1352 Clean classes for release
1714 Add comment into source 1353 Add comment into source
1715 Change name of some methods 1354 Change name of some methods
1716 Transform two independent singlet 1355 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1356 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1357 (ITStepMan + DNAChemMan)
1719 1358
1720 10.11.2011 M.K. tag emdna-V09 1359 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1360 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1361 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1362 the chemistryManager.
1724 1363
1725 09.11.2011 M.K. tag emdna-V09 1364 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1365 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1366 in G4TrackListNode.
1728 Simplify and improve the use of d 1367 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1368 Add more convenient methods in userReactionAction
1730 1369
1731 08.11.2011 M.K. tag emdna-V09 1370 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1371 Fix coverity warnings
1733 1372
1734 07.11.2011 M.K. tag emdna-V09 1373 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1374 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1375 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1376 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1377 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1378 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1379 Clean classes for release
1741 1380
1742 03.11.2011 M.K. tag emdna-V09 1381 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1382 Add dna libs in sources.cmake
1744 1383
1745 03.11.2011 M.K. tag emdna-V09 1384 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1385 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1386 Add dna includes in sources.cmake
1748 1387
1749 01.11.2011 M.K. tag emdna-V09 1388 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1389 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1390 G4ITTransportation, G4TrackList on Windows
1752 1391
1753 01.11.2011 G.Cosmo 1392 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1393 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1394 updated GNUMakefiles to have it properly defined.
1756 1395
1757 31.10.2011 M.K tag emdna-V09-04-35 1396 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1397 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1398 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives 1399 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1400 Fix windows compilation errors & warnings
1762 1401
1763 28.10.2011 M.K tag emdna-V09-04-34 1402 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1403 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1404 Plus remove obsolete G4Exception
1766 1405
1767 28.10.2011 M.K tag emdna-V09-04-33 1406 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1407 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1408 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1409 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1410 to models
1772 1411
1773 27.10.2011 M.K tag emdna-V09-04-32 1412 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1413 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1414 coverity errors.
1776 1415
1777 26.10.2011 M.K tag emdna-V09-04-31 1416 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared 1417 change std::shared_ptr to CLHEP::shared_ptr
1779 1418
1780 26.10.2011 M.K. tag emdna-V09-04-30 1419 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1420 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1421 G4MolecularConfiguration::fManager added
1783 1422
1784 26.10.2011 M.K. tag emdna-V09-04-29 1423 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1424 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1425 Add electron solvatation process & models
1787 Add chemical processes 1426 Add chemical processes
1788 1427
1789 21.10.2011 M.K. tag emdna-V09-04-28 1428 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model 1429 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1430 emdna-V09-04-24
1792 1431
1793 21.10.2011 M.K. tag emdna-V09-04-27 1432 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1433 CMake fixes from emdna-V09-04-24
1795 1434
1796 21.10.2011 M.K. tag emdna-V09-04-26 1435 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous 1436 Bug fixes and new dev from the previous tag
1798 1437
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1438 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1439 Extension of ionisation by HZE proposed by Z. Francis
1801 1440
1802 20.10.2011 M.K. tag emdna-V09-04-24 1441 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1442 Bug fixes and new dev from the previous tag
1804 1443
1805 07.10.2011 M.K. tag emdna-V09-04-23 1444 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files 1445 First tag with "molecules" files
1807 1446
1808 07.10.2011 M.K. tag emdna-V09-04-22 1447 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1448 Add molecules+management directory
1810 First tag with "management" files 1449 First tag with "management" files
1811 1450
1812 09.09.2011 G.Folger tag emdna-V09 1451 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer 1452 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc 1453 G4DNAMoleculeManager.cc
1815 1454
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1455 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1456 Updated sources.make and CMakeLists.txt
1818 1457
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1458 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1459 Reorganized whole architecture.
1821 1460
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1461 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1462 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1463 if no deexcitation)
1825 1464
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1465 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1466 Changed code (em0006) numbering for G4Exception
1828 1467
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1468 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1469 Switched to new G4Exception syntax
1831 1470
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1471 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1472 Added enhanced debug information in ionisation models
1834 1473
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1474 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1475 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1476
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1477 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1478 Removed obsolete information.
1840 1479
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1480 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1481 Updated deexcitation initialization in ionization models.
1843 1482
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1483 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1484 Coverity warnings removal
1846 1485
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1486 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1487 - Increased energy limits for
1849 G4DNAChargeIncrease 1488 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1489 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1490 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1491 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1492 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade 1493 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1494 of ionisation classes for Auger e-
1856 1495
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1496 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1497 Further compilation warnings removal
1859 1498
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1499 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1500 Compilation warnings removal
1862 1501
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1502 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1503 added Atomic Deexcitation to Ionisation Models
1865 1504
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1505 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1506 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1507 G4DNADingfelderChargeIncreaseModel.cc.
1869 1508
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1509 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1510 Changed process sub-type numbering.
1872 1511
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1512 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1513 Fixed coverity warnings.
1875 1514
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1515 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1516 Updated all models for handling of variable density.
1878 1517
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1518 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1519 Addition of dependencies to configuration files.
1881 1520
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1521 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1522 Addition of all files.
1884 1523
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1524 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1525 Creation of dna sub-package in electromagnetic category.