| Geant4 Cross Reference |
1 # Category emdna History << 1 =========================================================
2 << 2 Geant4 - an Object-Oriented Toolkit for Simulation in HEP
3 See `CONTRIBUTING.rst` for details of **requir << 3 =========================================================
4 which **must** added in reverse chronological << 4
5 It must **not** be used as a substitute for wr << 5 Category History file
6 << 6 ---------------------
7 ---------------------------------------------- << 7 This file should be used by G4 developers and category coordinators
8 << 8 to briefly summarize all major modifications introduced in the code
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) << 9 and keep track of all category-tags.
10 - missing value in DNA PTB Ionization Structur << 10 It DOES NOT substitute the CVS log-message one should put at every
11 - missing GetMaterial() in DNA PTB Excitation << 11 committal in the CVS repository !
12 << 12
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) << 13 ----------------------------------------------------------
14 - Modified the molecule names of OH, HO2, O in << 14 * Reverse chronological order (last date on top), please *
15 Each molecule configuration has a molecule d << 15 ----------------------------------------------------------*
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with <<
35 of std::function in G4OctreeFinder. <<
36 <<
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) <<
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with <<
51 Added missing declarations for TG4MoleculeSh <<
52 Based on [GitHub PR#69](https://github.com/G <<
53 <<
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) <<
106 - Use G4FindDataDir to access data libraries i <<
107 <<
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) <<
109 - correct fastercode section for dna opt6 <<
110 <<
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) <<
112 - correct scavenger counter for oxygen <<
113 <<
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) <<
115 - Fixed the K shell bug in G4DNARuddIonisation <<
116 <<
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) <<
118 - improved equilibrium processes, introduced G <<
119 <<
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) <<
121 - In navigation classes, removed references to <<
122 which is now deprecated. <<
123 <<
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) <<
125 - Removed references to unused G4GRSSolid and <<
126 <<
127 ## 2023-08-29 (emdna-V11-01-18) <<
128 - Fix minor/obvious Coverity issues <<
129 <<
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) <<
131 - Apply core clang-tidy fixes plus those for <<
132 - Cons/destructor modernization <<
133 - Readability and logic for conditionals/boo <<
134 <<
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) <<
136 - Apply patch from [GitHub PR 58](https://gith <<
137 - Use std::erfc to avoid precision loss <<
138 - Remove unused header <<
139 <<
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) <<
141 - minor correction for DNA material in option6 <<
142 <<
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) <<
144 - use analytical method for DNA material in op <<
145 <<
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 <<
147 - G4DNARuddIonisationExtendedModel - model re- <<
148 threads, applicable for scaled energy interv <<
149 an ion data is not available proton x-sectio <<
150 used, sampling of delta-electron is done usi <<
151 <<
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) <<
153 - Modified DNA cross section file name to new <<
154 <<
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) <<
156 - Add DNA cross section to dna_option6 <<
157 <<
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) <<
159 - Fix Compilation warnings on XCode <<
160 <<
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) <<
162 - correct the initial values of G4DNAEventSche <<
163 <<
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) <<
165 - add time structure (pulsed beam) to water ra <<
166 <<
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) <<
168 - correct KDTree bug <<
169 <<
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) <<
171 - icsd physicslist: deleted unused model, <<
172 - Apdated RegisterModel function with new stru <<
173 - added model data to G4DNAMaterialManager sin <<
174 <<
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) <<
176 - Fixed compilation warning on macOS/XCode for <<
177 in G4DNAVacuumModel::Initialise(). <<
178 <<
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) <<
180 - Introduced G4DNAMaterialManager to manage av <<
181 and keeps DNA cross section data in one thread <<
182 - minor change in G4VDNAModel <<
183 <<
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) <<
185 - reorganize multiple material model of PTB mo <<
186 G4VDNAModel plays like a data layer for multip <<
187 The concrete models are independent of G4DNAMo <<
188 <<
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) <<
190 - replaced string to material index and clean <<
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, <<
192 G4DNAPTBExcitationStructure) - PTB models <<
193 - added material pointer members for each conc <<
194 - removed unused objects (G4DataVector()) <<
195 <<
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) <<
197 - clean G4DNAModelInterface file for the model <<
198 <<
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) <<
200 - fix coverity of G4DNARuddIonisationExtendedM <<
201 (Uninitialized scalar variable) from cand1 ana <<
202 <<
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 <<
204 - G4DNARuddIonisationExtendedModel - fixed com <<
205 radioactive decay module - before this upd <<
206 only 5 ions have data needed for this mode <<
207 model scaling relation to the carbon ion i <<
208 no data; low-energy limit is used now more <<
209 but not killed, because they may have radi <<
210 lines are removed from the class <<
211 <<
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) <<
213 - Fixed more compilation warnings for implicit <<
214 <<
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) <<
216 - delete unused tests in dna (G4DNAProcessTest <<
217 <<
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) <<
219 - Fixed compilation warnings for implicit type <<
220 <<
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 <<
222 - G4DNAUeharaScreenedRutherfordElasticModel - <<
223 low and high energy limit for the model; r <<
224 <<
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) <<
226 - Fix Coverity issues for ref-09 <<
227 <<
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) <<
229 - minor correction of IRT-syn model (chemistry <<
230 after 1 ps. <<
231 <<
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- <<
233 - Add nitrogen models from PTra code <<
234 <<
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) <<
236 - Fixed minor mistake of file name in G4DNARPW <<
237 - Added protection for HighEnergyLimit/LowEner <<
238 G4DNARPWBAExcitationModel <<
239 <<
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) <<
241 - Fixed compilation warnings on Intel/icx comp <<
242 but not used in G4ITNavigator2. <<
243 <<
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) <<
245 - Fix user's report for IRT model. <<
246 If the first IRTSampling won't give any rea <<
247 <<
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) <<
249 - Fix Coverity static analysis for ref-08 <<
250 uninit_member in G4DNAMillerGreenExcitationMo <<
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI <<
252 Use auto & instead of auto : G4ITFinder, G4DN <<
253 <<
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) <<
255 - Resolve dependency inconsistencies : <<
256 dna/management/include/G4ChemicalMoleculeF <<
257 dna/management/include/G4UserMeshAction.hh <<
258 dna/management/include/G4OctreeFinder.hh i <<
259 <<
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) <<
261 - Partially resolve dependency inconsistencies <<
262 - NB: cannot be resolved fully without intro <<
263 G4emdna-man, G4emdna-molman, G4emdna-utils <<
264 <<
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) <<
266 - Define G4CT_MAX_COUNT for changing "compile <<
267 errors on NVHPC compiler. <<
268 <<
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 <<
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo <<
271 cleanup according to the recent G4VEmProce <<
272 headers are moved to source; C++11 keyward <<
273 <<
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) <<
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela <<
276 G4DNACPA100IonisationModel.cc, G4DNAChampion <<
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo <<
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx <<
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis <<
280 G4DNASancheExcitationModel.cc : <<
281 use G4FindDataDir("G4LEDATA") to find datase <<
282 <<
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) <<
284 - correct DNA ion definitions in G4DNARuddIoni <<
285 <<
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) <<
287 - G4Octree : fixed Coverity warning. <<
288 <<
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) <<
290 - update data structure to improve performance <<
291 <<
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) <<
293 - G4ITTransportation: fixed misuse of bitwise <<
294 <<
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) <<
296 - Added missing headers. <<
297 <<
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) <<
299 - change the scavenging filter of the IRT beyo <<
300 <<
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) <<
302 - Add localthread for fUse of G4VMoleculeCount <<
303 <<
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa <<
305 - Incorporation of model based on RPWBA to tra <<
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI <<
307 <<
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) <<
309 - add UserBrownianAction in G4DNABrownianTrans <<
310 G4DNAMolecularDissociation <<
311 - replace G4int by int64_t for width integer t <<
312 - add fResetScavenger in G4SchedulerMessenger <<
313 <<
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) <<
315 - save local instances for recurrent access to <<
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo <<
317 G4DNARuddIonisationModel <<
318 - use G4Pow and G4Log instead of std::pow and <<
319 - inside G4DNARuddIonisationExtendedModel comm <<
320 inside G4DNAGenericIonsManager <<
321 <<
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) <<
323 - Debug the report #2235 which might be relate <<
324 - Clean code <<
325 - Delete G4ITFinder.cc <<
326 <<
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) <<
328 - save local instances for recurrent access to <<
329 G4DNADingfelderChargeDecreaseModel and G4DNADi <<
330 - use G4Pow and G4Log instead of std::pow and <<
331 <<
332 ## 2022-03-18 SI (emdna-V11-00-10) <<
333 - add protection in G4DNACPA100IonisationModel <<
334 <<
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) <<
336 - remove macro commands to control the chemist <<
337 (creating models in G4SchedulerMessenger can m <<
338 - add flag OctreeFinder in IRT_syn's Initializ <<
339 <<
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) <<
341 - add macro commands to control the chemistry <<
342 parameters including the chemical molecules an <<
343 <<
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) <<
345 - optimize IRT-syn model, use reaction radius <<
346 - delete G4VReactionType, G4DNAReactionTypeMan <<
347 G4DNAPartiallyDiffusionControlled <<
348 - delete G4DNAIRT_geomtries <<
349 <<
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) <<
351 - `G4ITTransportation`: Make `PrepareState` mo <<
352 - `G4DNAPolyNucleotideReactionProcess`: <<
353 - Move `PrepareState` and `State` macros int <<
354 - Make `PrepareState` more function-like, ex <<
355 - Move variable `pMoleculeA` under `G4VERBOS <<
356 <<
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) <<
358 - add the condition of water material for the <<
359 warning in G4DNAMolecularDissociation::DecayIt <<
360 <<
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) <<
362 - modify the macro in G4Molecule.cc and G4ITTy <<
363 <<
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) <<
365 - Prefer pointer to `const G4Material` if poss <<
366 <<
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) <<
368 - Remove useless `const_cast` of `G4VSensitive <<
369 <<
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) <<
371 - add G4DNAPolyNucleotideReactionProcess, G4VD <<
372 files for DNA damage applications <<
373 <<
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) <<
375 - Change to new Markdown History format <<
376 <<
377 --- <<
378 <<
379 # History entries prior to 11.0 <<
380 16
381 8-11-2021, H. Tran, emdna-V10-07-15 17 8-11-2021, H. Tran, emdna-V10-07-15
382 - corrected Circular dependencies for mesoscop 18 - corrected Circular dependencies for mesoscopic model
383 - corrected the problem in IRT 19 - corrected the problem in IRT
384 20
385 4-11-2021, H. Tran, emdna-V10-07-14 21 4-11-2021, H. Tran, emdna-V10-07-14
386 - define a G4FakeParticleID::fLastValue in the 22 - define a G4FakeParticleID::fLastValue in the header file,
387 delete G4FakeParticleID.cc, 23 delete G4FakeParticleID.cc,
388 solve arithmetic problems, 24 solve arithmetic problems,
389 Added new mesoscopic model for dna chemistry 25 Added new mesoscopic model for dna chemistry
390 26
391 21-10-2021, W.G.Shin, emdna-V10-07-13 27 21-10-2021, W.G.Shin, emdna-V10-07-13
392 - Added a virtual classes for DNA geometry - G 28 - Added a virtual classes for DNA geometry - G4VDNAMolecularGeometry
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul 29 Modified classes - G4DNAIRT, G4DNAIRTMoleculeEncounterStepper,
394 G4ITModelProcessor, G4Sch 30 G4ITModelProcessor, G4Scheduler,
395 G4DNAMolecularReactionTab 31 G4DNAMolecularReactionTable
396 32
397 23-09-2021, A. Ribon, emdna-V10-07-12 33 23-09-2021, A. Ribon, emdna-V10-07-12
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit 34 - G4ITTransportation, G4DNAElastic, G4DNAExcitation, G4DNAIonisation,
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh << 35 G4DNAVibExcitation, G4DNAAttachment, G4DNAChargeDecrease,
400 G4DNAChargeIncrease, G4DNAElectronSolvation, 36 G4DNAChargeIncrease, G4DNAElectronSolvation, G4DNAMolecularDissociation,
401 G4DNASecondOrderReaction, G4DNAElectronHoleR 37 G4DNASecondOrderReaction, G4DNAElectronHoleRecombination,
402 G4DNABrownianTransportation : replaced hardw 38 G4DNABrownianTransportation : replaced hardwired process-sub-types
403 with enum values introduced in the new class 39 with enum values introduced in the new class G4LowEnergyEmProcessSubType
404 40
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 41 18-07-2021, V. Ivanchenko, emdna-V10-07-11
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati << 42 - G4DNABohrExcitationModel2, G4DNABohrIonisationModel2,
407 G4VLEPSModel - updated interfaces to G4Physi 43 G4VLEPSModel - updated interfaces to G4PhysicsVector
408 44
409 16-07-2021, D. Sakata, emdna-V10-07-10 45 16-07-2021, D. Sakata, emdna-V10-07-10
410 - Fixed initialization error in G4DNAELSEPAEla << 46 - Fixed initialization error in G4DNAELSEPAElasticModel
411 47
412 28-06-2021, G. Cosmo, emdna-V10-07-09 48 28-06-2021, G. Cosmo, emdna-V10-07-09
413 - Fixed compilation error in G4ITMultiNavigato 49 - Fixed compilation error in G4ITMultiNavigator when compiling with c++20
414 enabled. 50 enabled.
415 51
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 52 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07-08
417 - Added new classes G4DNADiracRMatrixExcitatio 53 - Added new classes G4DNADiracRMatrixExcitationModel
418 G4DNAQuinnPlasmonExcitatio 54 G4DNAQuinnPlasmonExcitationModel
419 G4DNARelativisticIonisatio 55 G4DNARelativisticIonisationModel
420 G4DNAPlasmonExcitation 56 G4DNAPlasmonExcitation
421 - Modified G4DNAELSEPAElasticModel for gold 57 - Modified G4DNAELSEPAElasticModel for gold
422 58
423 9-05-2021, H.Tran, tag emdna-V10-07-07 59 9-05-2021, H.Tran, tag emdna-V10-07-07
424 - Add IRT-syn model 60 - Add IRT-syn model
425 61
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 62 16-04-2021, B.Morgan, tag emdna-V10-07-06
427 - Migrate build to modular CMake API 63 - Migrate build to modular CMake API
428 64
429 27-04-2021, H.Tran, tag emdna-V10-07-05 65 27-04-2021, H.Tran, tag emdna-V10-07-05
430 - G4DNAElectronHoleRecombination: added Octree 66 - G4DNAElectronHoleRecombination: added OctreeFinder
431 - G4DNABrownianTransportation: modified AlongS 67 - G4DNABrownianTransportation: modified AlongStepDoIt
432 - added OctreeFinder and IRTUtils 68 - added OctreeFinder and IRTUtils
433 69
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 70 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04
435 - G4DNABornAngle, G4DNARuddAngle - updated pri 71 - G4DNABornAngle, G4DNARuddAngle - updated print method
436 72
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 73 12-03-2021, L.Pandola, tag emdna-V10-07-03
438 - Move DNA-related Unit Tests from lowenergy/t 74 - Move DNA-related Unit Tests from lowenergy/tests to dna/test
439 75
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 76 24-02-2021, G.Cosmo, tag emdna-V10-07-02
441 - Fixed dependency on g4tools, now moved to ex 77 - Fixed dependency on g4tools, now moved to externals module.
442 78
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 79 16-02-2021, W.G.Shin, tag emdna-V10-07-01
444 - G4DNAElectronHoleRecombination 80 - G4DNAElectronHoleRecombination
445 Dissociation channel of electron-hole recomb 81 Dissociation channel of electron-hole recombination moved to
446 G4EmDNAChemistry, _option1, _option2, _optio 82 G4EmDNAChemistry, _option1, _option2, _option3
447 - G4DNAWaterDissociationDisplacer 83 - G4DNAWaterDissociationDisplacer
448 Added the fragment displacement for new diss 84 Added the fragment displacement for new dissociation channel
449 85
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 86 29-10-2020, G.Cosmo, tag emdna-V10-06-12
451 - Fix thread contention on mutable data in G4D 87 - Fix thread contention on mutable data in G4DNAMolecularMaterial; might
452 help resolving observed crashes in MT runs. 88 help resolving observed crashes in MT runs.
453 Some code cleanup. 89 Some code cleanup.
454 90
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 91 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11
456 - G4DNAMolecularMaterial - removed commented l 92 - G4DNAMolecularMaterial - removed commented lines
457 - History file fixed 93 - History file fixed
458 94
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 95 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10
460 - G4DNAMolecularMaterial - attempt to fix nigh 96 - G4DNAMolecularMaterial - attempt to fix nightly problems
461 in chem6 example - do not delete instance of 97 in chem6 example - do not delete instance of the singleton
462 98
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 99 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09
464 - Added dependency on analysis/g4tools in GNUm 100 - Added dependency on analysis/g4tools in GNUmakefile,
465 required after analysis update (analysis-V10 101 required after analysis update (analysis-V10-06-05)
466 102
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 103 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-08
468 - Fixed coverity warning 104 - Fixed coverity warning
469 105
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 106 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-07
471 - Fixed coverity warnings 107 - Fixed coverity warnings
472 - Fix of IRT bug 108 - Fix of IRT bug
473 (protection for the crash induced by empty re 109 (protection for the crash induced by empty reaction set)
474 110
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 111 28-05-2020, B.Morgan, tag emdna-V10-06-06
476 - Add missing G4analysismng module dependency 112 - Add missing G4analysismng module dependency to G4emdna-utils
477 113
478 20-05-20: W.G.Shin emdna-V10-06-05 114 20-05-20: W.G.Shin emdna-V10-06-05
479 - Revised displacement of OH radicals of B1A1 115 - Revised displacement of OH radicals of B1A1 dissociation
480 based on momentum conservation in G4DNAWaterDi 116 based on momentum conservation in G4DNAWaterDissociationDisplacer class
481 - Added missing History 117 - Added missing History
482 118
483 26-04-20: W.G.Shin emdna-V10-06-04 119 26-04-20: W.G.Shin emdna-V10-06-04
484 - Fixed coverity test 120 - Fixed coverity test
485 121
486 15-04-20: G.Cosmo emdna-V10-06-03 122 15-04-20: G.Cosmo emdna-V10-06-03
487 - G4MoleculeDefinition: copy constructor and a 123 - G4MoleculeDefinition: copy constructor and assignment operator
488 are not allowed (as for G4ParticleDefinition 124 are not allowed (as for G4ParticleDefinition). Now deleted.
489 125
490 19-02-20: W.G.Shin emdna-V10-06-02 126 19-02-20: W.G.Shin emdna-V10-06-02
491 - Fixed memory issue on G4DNAMolecularReaction 127 - Fixed memory issue on G4DNAMolecularReactionTable
492 - Revised headeres of IRT classes 128 - Revised headeres of IRT classes
493 129
494 12-02-20: W.G.Shin emdna-V10-06-01 130 12-02-20: W.G.Shin emdna-V10-06-01
495 - Added protections floating point exception i 131 - Added protections floating point exception in G4DNAIRT class
496 132
497 10-01-20: W.G.Shin emdna-V10-06-00 133 10-01-20: W.G.Shin emdna-V10-06-00
498 - Added classes for IRT 134 - Added classes for IRT
499 - Added features in management classes for IRT 135 - Added features in management classes for IRT (G4ITReaction,
500 G4ITModelProcessor ...) 136 G4ITModelProcessor ...)
501 - Added features in G4DNAMolecularReactionTabl 137 - Added features in G4DNAMolecularReactionTable for GFDE
502 - Added molecules of Plante et al. (2017) (Oxy 138 - Added molecules of Plante et al. (2017) (Oxygen, O2, O3, HO2)
503 139
504 15-11-19: G.Cosmo emdna-V10-05-11 140 15-11-19: G.Cosmo emdna-V10-05-11
505 - Fixed cases of implicit type conversions fro 141 - Fixed cases of implicit type conversions from size_t to G4int.
506 142
507 8-11-19: HT, tag emdna-V10-05-10 143 8-11-19: HT, tag emdna-V10-05-10
508 - Fixed the exception divide by zero of diffus 144 - Fixed the exception divide by zero of diffusionCoefficient in
509 G4DNABrownianTransportation::AlongStepGetPhysi 145 G4DNABrownianTransportation::AlongStepGetPhysicalInteractionLength
510 for the case of static molecules (DNA) (diffus 146 for the case of static molecules (DNA) (diffusionCoefficient = 0)
511 147
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 148 24-10-19: J.Apostolakis, tag emdna-V10-05-09
513 - Enabled G4ItNavigator{1,2} to flag if it enc 149 - Enabled G4ItNavigator{1,2} to flag if it encounters new type
514 of external physical volume (meant for adapt 150 of external physical volume (meant for adapting external navigators)
515 151
516 19-10-19: WGS, SI, tag emdna-V10-05-08 152 19-10-19: WGS, SI, tag emdna-V10-05-08
517 - Added new model G4DNAELSEPAElasticModel 153 - Added new model G4DNAELSEPAElasticModel
518 154
519 11-10-19: WGS, SI, tag emdna-V10-05-07 155 11-10-19: WGS, SI, tag emdna-V10-05-07
520 - G4DNAOneStepThermalizationModel.* : 156 - G4DNAOneStepThermalizationModel.* :
521 added Kreipl and Meesungnoen amorphous ice mod 157 added Kreipl and Meesungnoen amorphous ice models
522 - G4DNAWaterDissociationDisplacer* : updated 158 - G4DNAWaterDissociationDisplacer* : updated
523 159
524 03-06-2019, MK, tag emdna-V10-05-06 160 03-06-2019, MK, tag emdna-V10-05-06
525 - Fix GCC9 warnings 161 - Fix GCC9 warnings
526 162
527 26-03-2019, HT, tag emdna-V10-05-05 163 26-03-2019, HT, tag emdna-V10-05-05
528 - Added G4DNAMolecule 164 - Added G4DNAMolecule
529 165
530 10-03-2019, MK, tag emdna-V10-05-04 166 10-03-2019, MK, tag emdna-V10-05-04
531 - Fix reaction site issue 167 - Fix reaction site issue
532 - Chemistry: clarify pointer ownership, clean 168 - Chemistry: clarify pointer ownership, clean code
533 169
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 170 11-03-2019, G.Cosmo, tag emdna-V10-05-03
535 - Fixed typos in printouts in G4MolecularConfi 171 - Fixed typos in printouts in G4MolecularConfiguration, G4VITRestDiscreteProcess,
536 G4VITRestProcess, G4DNAElectronHoleRecombina 172 G4VITRestProcess, G4DNAElectronHoleRecombination.
537 173
538 18-01-2019, HT, tag emdna-V10-05-02 174 18-01-2019, HT, tag emdna-V10-05-02
539 - Transformed the exception into warning in G4 175 - Transformed the exception into warning in G4DNAMolecularDissociation
540 176
541 28-12-2018, MK, tag emdna-V10-05-01 177 28-12-2018, MK, tag emdna-V10-05-01
542 DEV-300 : G4DNAChemistryManager clarify pointe 178 DEV-300 : G4DNAChemistryManager clarify pointer ownership
543 179
544 05-01-2019, HT, tag emdna-V10-05-00 180 05-01-2019, HT, tag emdna-V10-05-00
545 - moved the checking position of track status 181 - moved the checking position of track status
546 in G4ITStepProcessor::SetInitialStep() 182 in G4ITStepProcessor::SetInitialStep()
547 183
548 01-09-2018, SI, tag emdna-V10-04-10 184 01-09-2018, SI, tag emdna-V10-04-10
549 renamed tag 185 renamed tag
550 186
551 01-09-2018, SI, tag emdna-v10-04-09 187 01-09-2018, SI, tag emdna-v10-04-09
552 - bugzilla 2084 188 - bugzilla 2084
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id 189 https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2084
554 190
555 30-07-2018, SI, tag emdna-V10-04-08 191 30-07-2018, SI, tag emdna-V10-04-08
556 - included upper energy limit of models (2) 192 - included upper energy limit of models (2)
557 193
558 29-07-2018, SI, tag emdna-V10-04-07 194 29-07-2018, SI, tag emdna-V10-04-07
559 - included upper energy limit of models 195 - included upper energy limit of models
560 196
561 01-07-2018, SI, tag emdna-V10-04-06 197 01-07-2018, SI, tag emdna-V10-04-06
562 - added protection in Auger emission 198 - added protection in Auger emission
563 199
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 200 30-06-2018, MS, ZF, SI tag emdna-V10-04-05
565 - updated Si mass in G4DNAGenericIonsManager 201 - updated Si mass in G4DNAGenericIonsManager
566 202
567 22-06-2018, SI tag emdna-V10-04-04 203 22-06-2018, SI tag emdna-V10-04-04
568 - fixed warnings in lepts models 204 - fixed warnings in lepts models
569 205
570 14-05-2018, SI tag emdna-V10-04-03 206 14-05-2018, SI tag emdna-V10-04-03
571 - chemistry update by Mathieu 207 - chemistry update by Mathieu
572 208
573 01-05-2018, SI tag emdna-V10-04-02 209 01-05-2018, SI tag emdna-V10-04-02
574 - chemistry update by Mathieu 210 - chemistry update by Mathieu
575 211
576 09-02-2018, M.Asai tag emdna-V10-04-01 212 09-02-2018, M.Asai tag emdna-V10-04-01
577 - G4DNAMolecularMaterial.cc : 213 - G4DNAMolecularMaterial.cc :
578 GetDensityTableFor() and GetNumMolPerVolTabl 214 GetDensityTableFor() and GetNumMolPerVolTableFor() methods are accepted
579 at G4State_Init rather than G4State_Idle. 215 at G4State_Init rather than G4State_Idle.
580 - Co-works with run-V10-04-01 and global-V10-0 216 - Co-works with run-V10-04-01 and global-V10-04-01.
581 217
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 218 21-12-2017, G.Cosmo tag emdna-V10-04-00
583 - Fixed self-consistency in headers (missing # 219 - Fixed self-consistency in headers (missing #include) in G4IosFlagsSaver,
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff 220 G4KDNode, G4MoleculeIterator and G4LEPTSDiffXS.
585 Fixed spurious definition of G4IT namespace 221 Fixed spurious definition of G4IT namespace in G4ITMultiNavigator header.
586 Thanks to Raphael Isemann for reporting thes 222 Thanks to Raphael Isemann for reporting these.
587 223
588 01-11-2017, MK tag emdna-V10-03-30 224 01-11-2017, MK tag emdna-V10-03-30
589 - remove models/test directory 225 - remove models/test directory
590 226
591 31-10-2017, JA ( tag missing ) 227 31-10-2017, JA ( tag missing )
592 - G4KDNode.hh: Add missing included file - nee 228 - G4KDNode.hh: Add missing included file - needed in test
593 229
594 16-08-2017, SI tag emdna-V10-03-28 230 16-08-2017, SI tag emdna-V10-03-28
595 - updated variable types in models 231 - updated variable types in models
596 232
597 10-08-2017, SI tag emdna-V10-03-27 233 10-08-2017, SI tag emdna-V10-03-27
598 - test 234 - test
599 235
600 10-08-2017, SI tag emdna-V10-03-26 236 10-08-2017, SI tag emdna-V10-03-26
601 - same as previous 237 - same as previous
602 238
603 09-08-2017, SI tag emdna-V10-03-25 239 09-08-2017, SI tag emdna-V10-03-25
604 - same as previous 240 - same as previous
605 241
606 09-08-2017, SI tag emdna-V10-03-24 242 09-08-2017, SI tag emdna-V10-03-24
607 - G4DNAEmfietzoglouIonisationModel: added prot 243 - G4DNAEmfietzoglouIonisationModel: added protection for out of bound access
608 244
609 03-08-2017, VI tag emdna-V10-03-23 245 03-08-2017, VI tag emdna-V10-03-23
610 - G4DNAExcitation, G4DNAIonisation - make cohe 246 - G4DNAExcitation, G4DNAIonisation - make coherent model initialisation
611 247
612 28-07-2017, SI, tag emdna-V10-03-22 248 28-07-2017, SI, tag emdna-V10-03-22
613 - added stationary mode flag to CPA100 ionisat 249 - added stationary mode flag to CPA100 ionisation.
614 250
615 04-07-2017, SI, tag emdna-V10-03-21 251 04-07-2017, SI, tag emdna-V10-03-21
616 - added tagging of atom. deexc. products in io 252 - added tagging of atom. deexc. products in ionisation models.
617 253
618 31-05-2017, SM, tag emdna-V10-03-20 254 31-05-2017, SM, tag emdna-V10-03-20
619 - Correct windows issues with path of diff. CS 255 - Correct windows issues with path of diff. CS data file.
620 256
621 31-05-2017, SI, tag emdna-V10-03-19 257 31-05-2017, SI, tag emdna-V10-03-19
622 - roll-back (Windows issues with previous tag) 258 - roll-back (Windows issues with previous tag)
623 259
624 24-05-2017, SI, tag emdna-V10-03-18 260 24-05-2017, SI, tag emdna-V10-03-18
625 - added tagging of atom. deexc. products in io 261 - added tagging of atom. deexc. products in ionisation models.
626 262
627 11-05-2017, VI tag emdna-V10-03-17 263 11-05-2017, VI tag emdna-V10-03-17
628 - fix for gcc 7.1 warnings in G4DNACrossSectio 264 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
629 265
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 266 10-05-2017, NL, MK, SI, tag emdna-V10-03-16
631 - fix for gcc 7.1 warnings in G4DNACrossSectio 267 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
632 268
633 03-05-2017, SM, tag emdna-V10-03-15 269 03-05-2017, SM, tag emdna-V10-03-15
634 - add the new G4DNADummyModel and allow the co 270 - add the new G4DNADummyModel and allow the combination of G4VEmModel and G4VDNAModel in G4DNAModelInterface.
635 271
636 27-04-2017, SM, tag emdna-V10-03-14 272 27-04-2017, SM, tag emdna-V10-03-14
637 - correct small typo mistakes. 273 - correct small typo mistakes.
638 274
639 27-04-2017, SM, tag emdna-V10-03-13 275 27-04-2017, SM, tag emdna-V10-03-13
640 - update Models/G4DNAModelInterface to correct 276 - update Models/G4DNAModelInterface to correctly use G4DNAMolecularMaterial
641 277
642 10-03-2017, MK, tag emdna-V10-03-12 278 10-03-2017, MK, tag emdna-V10-03-12
643 - update utils/GNUmakefile 279 - update utils/GNUmakefile
644 280
645 13-02-2017, MK, tag emdna-V10-03-11 281 13-02-2017, MK, tag emdna-V10-03-11
646 - G4DNAMolecularMaterial: update doxygen doc 282 - G4DNAMolecularMaterial: update doxygen doc
647 283
648 13-02-2017, MK, tag emdna-V10-03-10 284 13-02-2017, MK, tag emdna-V10-03-10
649 - G4DNAMolecularMaterial: 285 - G4DNAMolecularMaterial:
650 remove newly introduced methods, add fatal e 286 remove newly introduced methods, add fatal exception if used
651 add doxygen documentation 287 add doxygen documentation
652 288
653 10-02-2017, MK, tag emdna-V10-03-09 289 10-02-2017, MK, tag emdna-V10-03-09
654 - Introducing G4PhysChemIO 290 - Introducing G4PhysChemIO
655 - Move call to G4TrackList::Pop(track) from G4 291 - Move call to G4TrackList::Pop(track) from G4ITTrackingManager
656 to G4ITTrackHolder. And make sure track stat 292 to G4ITTrackHolder. And make sure track status is set to fStopAndKill
657 when G4ITTrackHolder::PushToKill is called. 293 when G4ITTrackHolder::PushToKill is called.
658 294
659 09-02-2017, MK, tag emdna-V10-03-08 295 09-02-2017, MK, tag emdna-V10-03-08
660 - G4KDNode.hh: remove unused G4ThreeVector hea 296 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation 297 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t 298 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization 299 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K 300 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665 301
666 24-01-2017, SM, tag emdna-V10-03-07 302 24-01-2017, SM, tag emdna-V10-03-07
667 - add a ifdef to remove a warning (windows onl 303 - add a ifdef to remove a warning (windows only) related to the use of several levels of map.
668 304
669 23-01-2017, SM, tag emdna-V10-03-06 305 23-01-2017, SM, tag emdna-V10-03-06
670 - add missing G4DNAModelInterface files (.hh a 306 - add missing G4DNAModelInterface files (.hh and .cc) to the source.cmake
671 307
672 23-01-2017, SM CV, tag emdna-V10-03-05 308 23-01-2017, SM CV, tag emdna-V10-03-05
673 - add new G4DNAPTB* classes and the structure 309 - add new G4DNAPTB* classes and the structure of the new material management system
674 310
675 14-01-2017, MK, tag emdna-V10-02-37 311 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingMan 312 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction 313 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Schedule 314 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679 315
680 28-12-2016, SI, tag emdna-V10-03-04 316 28-12-2016, SI, tag emdna-V10-03-04
681 - extended upper energy limit of protons for 317 - extended upper energy limit of protons for
682 G4DNARuddIonisationExtendedModel 318 G4DNARuddIonisationExtendedModel
683 319
684 27-12-2016, SI, tag emdna-V10-03-03 320 27-12-2016, SI, tag emdna-V10-03-03
685 - updated references of CPA100 classes 321 - updated references of CPA100 classes
686 322
687 23-12-2016, SI, tag emdna-V10-03-02 323 23-12-2016, SI, tag emdna-V10-03-02
688 - updated sources.cmake 324 - updated sources.cmake
689 325
690 23-12-2016, SI, tag emdna-V10-03-01 326 23-12-2016, SI, tag emdna-V10-03-01
691 - commit of first CPA100 classes, part 2 327 - commit of first CPA100 classes, part 2
692 328
693 21-12-2016, SI, tag emdna-V10-03-00 329 21-12-2016, SI, tag emdna-V10-03-00
694 - commit of first CPA100 classes 330 - commit of first CPA100 classes
695 331
696 27-11-2016, MK, tag emdna-V10-02-36 332 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 333 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 334 - G4DNADamages -> G4DNADamage
699 335
700 17-11-2016, MK, tag emdna-V10-02-35 336 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 337 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 338
703 16-11-2016, MK, tag emdna-V10-02-34 339 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat 340 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 341 displacement types can be thread shared
706 - G4TrackState: Move implementation of static 342 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 343 G4VTrackStateID::Create() to cc file - windows crash
708 344
709 15-11-2016, MK, tag emdna-V10-02-33 345 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 346 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 347
712 14-11-2016, MK, tag emdna-V10-02-32 348 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t 349 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 350 windows platforms
715 351
716 14-11-2016, MK, tag emdna-V10-02-31 352 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: 353 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 354 tag init constexpr factor with number rather than expression
719 355
720 14-11-2016, MK, tag emdna-V10-02-30 356 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 357 - Use CLHEP::pi instead of M_PI
722 358
723 14-11-2016, MK, tag emdna-V10-02-29 359 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 360 - Correct bracket enclosing
725 361
726 14-11-2016, MK, tag emdna-V10-02-28 362 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 363 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 364 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 365 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 366 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 367 - Adds and use G4CTCounter
732 368
733 02-11-2016, MK, tag emdna-V10-02-27 369 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom 370 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 371 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo 372 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety 373 computeStep & computeSafety
738 374
739 07-08-2016, SI, tag emdna-V10-02-26 375 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 376 - added stationnary mode to sub-excitation electron processes
741 377
742 23-06-2016, MK 378 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 379 - G4Scheduler: move G4IosFlagsSaver to Process()
744 380
745 3-06-2016, MK, tag emdna-V10-02-25 381 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 382 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 383 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 384 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 385
750 3-06-2016, MK, tag emdna-V10-02-24 386 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 387 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 388 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 389 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 390 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 391 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 392 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc 393 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 394 model used for another part than e-
759 395
760 1-06-2016, MK, tag emdna-V10-02-23 396 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 397 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 398 logic for interface with physics models
763 399
764 31-05-2016, MK, tag emdna-V10-02-22 400 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 401 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 402
767 28-05-2016, MK, tag emdna-V10-02-21 403 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 404 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 405 one of the previous tags
770 406
771 19-05-2016, MK, tag emdna-V10-02-20 407 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 408 - G4ITNavigator: remove warnings on gcc6.1
773 409
774 17-05-2016, MK, tag emdna-V10-02-19 410 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 411 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 412 correct model and process names for solvation
777 413
778 12-05-2016, MK, tag emdna-V10-02-18 414 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: 415 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 416 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne 417 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 418 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 419 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 420 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 421 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 422 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim 423 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 424 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 425 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 426 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 427 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 428 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 429 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 430 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 431 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 432 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 433 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 434 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 435 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 436 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 437 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 438 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv 439 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 440 created; otherwise, the primary electron is killed
805 441
806 30-04-2016, MK, tag emdna-V10-02-17 442 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 443 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 444
809 30-04-2016, MK, tag emdna-V10-02-16 445 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 446 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p 447 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 448 unregistered molecule definition
813 449
814 22-04-2016, MK, tag emdna-V10-02-15 450 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 451 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 452 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 453
818 22-04-2016, MK, tag emdna-V10-02-14 454 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit 455 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 456 remove usage of internal energy boundaries
821 457
822 19-03-2016, SI, tag emdna-V10-02-13 458 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 459 - added nrj extensibility to SR and USR models
824 460
825 11-03-2016, SI, tag emdna-V10-02-12 461 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 462 -roll back to files in emdna-V10-02-06
827 463
828 10-03-2016, SI, tag emdna-V10-02-11 464 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 465 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 466 and G4DNAScreenedRutherfordElasticModel
831 467
832 10-03-2016, SI, tag emdna-V10-02-10 468 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 469 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 470
835 07-03-2016, SI, tag emdna-V10-02-09 471 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 472 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 473 of G4DNAUeharaScreenedRutherfordElasticModel
838 474
839 06-03-2016, SI, tag emdna-V10-02-08 475 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 476 -removed useless G4Pow declaration
841 477
842 04-03-2016, SI, tag emdna-V10-02-07 478 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 479 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 480 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 481
846 02-03-2016, SI, tag emdna-V10-02-06 482 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 483 -replaced std::exp by G4Exp
848 484
849 02-03-2016, SI, tag emdna-V10-02-05 485 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 486 -replaced std::exp by G4Exp
851 487
852 02-03-2016, SI, tag emdna-V10-02-04 488 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 489 -replaced std::exp by G4Exp
854 490
855 01-03-2016, SI, tag emdna-V10-02-03 491 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 492 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 493 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 494 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 495 by S. Okada (KEK, JP)
860 496
861 17-02-2016, MK, tag emdna-V10-02-02 497 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 498 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 499
864 16-12-2015, SI, tag emdna-V10-02-01 500 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: 501 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 502 added protection on energy for interpolation method change
867 503
868 16-12-2015, SI, tag emdna-V10-02-00 504 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add 505 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 506 energy
871 507
872 13-11-2015, MK, tag emdna-V10-01-55 508 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 509 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 510 file
875 511
876 10-11-2015, MK, tag emdna-V10-01-54 512 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 513 * remove unused variables
878 514
879 10-11-2015, MK, tag emdna-V10-01-53 515 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 516 * Coverity fixes
881 517
882 06-11-2015, MK, tag emdna-V10-01-52 518 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 519 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 520
885 06-11-2015, MK, tag emdna-V10-01-51 521 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 522 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 523 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 524
889 06-11-2015, MK, tag emdna-V10-01-50 525 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 526 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 527 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 528 * Add G4ITStepProcessorState_Lock.hh
893 529
894 06-11-2015, MK, tag emdna-V10-01-49 530 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 531 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 532 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 533 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 534 but in the source file - causing crashes on windows
899 535
900 04-11-2015, MK, tag emdna-V10-01-48 536 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 537 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 538 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 539 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 540 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 541 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 542 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 543 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 544 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 545 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using 546 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 547 all dissociation products have been defined (they will just not be taken
912 into account) 548 into account)
913 * G4DNAMolecularReactionTable: delete reaction 549 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 550
915 03-11-2015, MK, tag emdna-V10-01-47 551 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 552 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac 553 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 554 the call
919 555
920 03-11-2015, MK, tag emdna-V10-01-46 556 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 557 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 558 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 559 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 560 (causing navigator complains)
925 561
926 03-11-2015, MK, tag emdna-V10-01-45 562 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 563 * G4Serialize: Add definition in header for G4String
928 564
929 02-11-2015, MK, tag emdna-V10-01-44 565 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 566 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 567 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 568 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 569 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon 570 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 571 -> G4MolecularConfMan is taking care of this
936 572
937 30-10-2015, MK, tag emdna-V10-01-43 573 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter 574 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 575 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 576 * Unit tests corrected
941 * G4VITDiscreteProcess added 577 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 578 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 579 * Intermediate update for 10.2 release
944 580
945 27-10-2015, MK, tag emdna-V10-01-42 581 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 582 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 583
948 26-10-2015, MK, tag emdna-V10-01-41 584 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 585 * Sanche model: try to solve std::vector out of bounds
950 586
951 23-10-2015, MK, tag emdna-V10-01-40 587 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 588 * remove all CLHEP::shared_ptr usage
953 589
954 23-10-2015, CV, SM, tag emdna-V10-01-39 590 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel 591 * Addded base class G4VDNAPTBModel
956 592
957 28-09-2015, SI, tag emdna-V10-01-38 593 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 594 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 595
960 19-09-2015, MK, tag emdna-V10-01-37 596 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 597 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 598 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 599
964 17-09-2015, MK, tag emdna-V10-01-36 600 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 601 * G4MoleculeGun: Remove compilation warnings
966 602
967 04-09-2015 MK, tag emdna-V10-01-35 603 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 604 * Fix G4MoleculeGun compilation errors
969 605
970 03-09-2015 SI, tag emdna-V10-01-34 606 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 607 * Added stationary regime to all inelastic models
972 608
973 19-08-2015, MK 609 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 610 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 611 - compatible with both Smoluchowski & Gillespie models
976 612
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 613 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 614 * Added easier handling of cumulative proba. in SR elastic models
979 615
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 616 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 617 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 618 declaration of G4MoleculeShoot.
983 619
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 620 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 621 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 622 declaration of G4MoleculeShootMessenger.
987 623
988 12-08-2015, MK, tag emdna-V10-01-29 624 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 625 * Add G4Serialize in the build tree temporarily
990 626
991 12-08-2015, MK, tag emdna-V10-01-28 627 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 628 * G4Serialize added
993 629
994 12-08-2015, MK 630 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 631 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 632
997 24-07-2015, MK 633 24-07-2015, MK
998 - G4MolecularReactionTable 634 - G4MolecularReactionTable
999 * Add get methods 635 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 636 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 637 * Molecule gun : place randomly in a box
1002 638
1003 15-07-2015, MK 639 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA 640 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 641 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 642 * processes & models initialisation again
1007 643
1008 15-07-2015, MK, tag emdna-V10-01-26 644 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 645 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 646 * add macro to prevent warnings in non-verbose mode
1011 647
1012 11-07-2015, MK, tag emdna-V10-01-25 648 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 649 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 650 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 651
1016 10-07-2015, MK, tag emdna-V10-01-24 652 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 653 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 654 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 655 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 656 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 657
1022 08-07-2015, MK, tag emdna-V10-01-23 658 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 659 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 660 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 661 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose 662 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 663 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 664 - G4MoleculeDefinition:
1029 ::SetFormatedName added 665 ::SetFormatedName added
1030 ::NewConfiguration methods added 666 ::NewConfiguration methods added
1031 ::NewConfiguration added 667 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 668 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 669 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 670 ::Finalize added
1035 - G4MolecularConfiguration: 671 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 672 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 673 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 674 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec 675 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula 676 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 677 than molecule models
1042 - G4Molecule add constructor where only G4Mol 678 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 679 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 680 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 681 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 682 - G4DNAElectronHoleRecombination added
1047 683
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 684 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c 685 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 686 fasterCode usage on shell selection.
1051 687
1052 26-06-2015, MK 688 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to 689 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 690 warning message description
1055 691
1056 16-06-205, MK 692 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 693 - Add G4Scheduler::GetGun()
1058 694
1059 16-06-2015, MK, tag emdna-V10-01-21 695 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 696 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 697 - G4DNAIonElasticModel: clean and fix double free
1062 698
1063 12-06-2015, MK, tag emdna-V10-01-20 699 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 700 - remove virtual keyword from G4IT::GetPosition()
1065 701
1066 04-06-2015, MK 702 04-06-2015, MK
1067 - just cosmetics 703 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 704 - remove virtual keyword from G4IT::operator[]
1069 705
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 706 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 707 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 708 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 709 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 710 - Fully qualify std::string elsewhere as needed to adjust
1075 711
1076 22-05-2015, John Allison, tag emdna-V10-01-18 712 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 713 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 714 "G4Threading::IsMasterThread()".
1079 715
1080 17-05-2015, MK, tag emdna-V10-01-17 716 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 717 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 718 - Correct sources.cmake
1083 - Born headears: includes both model versions 719 - Born headears: includes both model versions when proxy header is included
1084 720
1085 16-05-2015, MK, tag emdna-V10-01-16 721 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 722 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 723 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 724 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 725 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 726 - Add G4DNABornExcitationModel2 (temporary)
1091 727
1092 15-05-2015, MK, tag emdna-V10-01-15 728 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 729 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 730
1095 14-05-2015, MK, tag emdna-V10-01-14 731 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 732 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 733
1098 14-05-2015, MK, tag emdna-V10-01-13 734 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 735 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 736 - G4ITReaction: try to solve compilation error
1101 737
1102 12-05-2015, MK, tag emdna-V10-01-12 738 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 739 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 740
1105 12-05-2015, MK, tag emdna-V10-01-11 741 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 742 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 743
1108 11-05-2015, MK, tag emdna-V10-01-10 744 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 745 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 746 +Add GetPartialCrossSection
1111 +Code cleaning 747 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 748 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 749 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 750 - G4DNAChemistryManager::GetValue(...) added
1115 751
1116 02-05-2015, MK 752 02-05-2015, MK
1117 - Update G4TrackState & related classes 753 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: 754 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian 755 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 756 +comment useless method
1121 - G4Scheduler: 757 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS 758 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime 759 +remove fTmpEndTime
1124 +Add CanICarryOn 760 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 761 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 762
1127 18-03-2015, MK, tag emdna-V10-01-08 763 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 764 - Same as before, just add the missing History file
1129 765
1130 18-03-2015, MK, tag emdna-V10-01-07 766 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 767 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 768 instead of a reference
1133 769
1134 12-02-2015, MK, tag emdna-V10-01-06 770 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 771 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 772 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi 773 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 774
1139 11-02-2015, MK, tag emdna-V10-01-05 775 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 776 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 777 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 778 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 779
1144 16-01-2015, SI, tag emdna-V10-01-04 780 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 781 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 782
1147 14-12-2014, MK, tag emdna-V10-01-03 783 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 784 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval 785 - ScreenRutherfordElastic: correct retrieval of water density
1150 786
1151 13-12-2014, SI, tag emdna-V10-01-02 787 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 788 - Added elastic model by H. Tran.
1153 789
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 790 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 791 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 792 to allow for compilation on Linux/clang-3.5.
1157 793
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 794 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 795 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 796 include missing files:
1161 G4ITTransportationManager.icc 797 G4ITTransportationManager.icc
1162 G4KDNode.icc 798 G4KDNode.icc
1163 G4KDTree.icc 799 G4KDTree.icc
1164 G4MoleculeFinder.hh 800 G4MoleculeFinder.hh
1165 801
1166 01-12-2014, MK, tag emdna-V10-00-63 802 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 803 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 804 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 805 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 806 when the particle has reached a boundary
1171 807
1172 28-11-2014, MK, tag emdna-V10-00-62 808 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 809 - Retag
1174 810
1175 28-11-2014, MK, tag emdna-V10-00-61 811 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 812 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 813 - Fix Brownian navigation
1178 - Some fixes related to scheduler 814 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 815 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 816 - Enhance comments
1181 817
1182 24-11-2014, MK, tag emdna-V10-00-60 818 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 819 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 820
1185 24-11-2014, MK, tag emdna-V10-00-59 821 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 822 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 823 - Remove useless verbose
1188 - Try to compile on all platforms 824 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 825 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 826 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 827 Just registering constructor is enough to initialized the chemistry
1192 828
1193 24-11-2014, MK, tag emdna-V10-00-58 829 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 830 - G4FastList: remove all friend declarations
1195 831
1196 22-11-2014, MK, tag emdna-V10-00-57 832 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 833 - Another attempt to compile G4FastList on all platforms
1198 834
1199 22-11-2014, MK, tag emdna-V10-00-56 835 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 836 - Attempt to compile G4FastList on all platforms
1201 837
1202 21-11-2014, MK, tag emdna-V10-00-55 838 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 839 - Attempt to compile G4FastList with clang
1204 840
1205 21-11-2014, MK, tag emdna-V10-00-54 841 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 842 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou 843 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 844 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 845 - Update G4ITNavigator2 to the G4Navigator of John
1210 846
1211 21-11-2014, MK, tag emdna-V10-00-53 847 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b 848 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 849 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 850 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time 851 is false by default --> uses the random time computation for crossing
1216 boundaries 852 boundaries
1217 853
1218 20-11-2014, SI, tag emdna-V10-00-52 854 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 855 - Improved error message for missing data in PW elastic model
1220 856
1221 08-11-2014, MK, tag emdna-V10-00-51 857 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 858 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 859 when the asked item is not found
1224 860
1225 03-11-2014 MK, tag emdna-V10-00-50 861 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 862 - correct track creation by G4MoleculeGunMessenger
1227 863
1228 03-11-2014 MK, tag emdna-V10-00-49 864 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 865 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 866 - Correct a bug in G4MoleculeGun
1231 867
1232 28-10-2014 PA, tag emdna-V10-00-48 868 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 869 - correct compilation warnings
1234 870
1235 28-10-2014 PA, tag emdna-V10-00-47 871 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 872 - correct compilation warnings
1237 873
1238 28-10-2014 PA, tag emdna-V10-00-46 874 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 875 - correction in sources.cmake
1240 876
1241 28-10-2014 PA, tag emdna-V10-00-45 877 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 878 - retag to add LEPTS
1243 879
1244 28-10-2014 PA, tag emdna-V10-00-44 880 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 881 - add LEPTS
1246 882
1247 25-10-2014 MK, tag emdna-V10-00-43 883 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 884 - remove useless G4VITScheduler
1249 885
1250 25-10-2014 MK, tag emdna-V10-00-42 886 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 887 - correct warnings
1252 888
1253 24-10-2014 MK, tag emdna-V10-00-41 889 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 890 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 891 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 892 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 893 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 894 - G4ITFinder added
1259 - G4VITTrackHolder added 895 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 896 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 897 - code cleaned + useless classes removed
1262 898
1263 24-10-2014 MK, tag emdna-V10-00-40 899 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 900 - G4ITStepManager: remove verbose at closure time
1265 901
1266 21-10-2014 MK, tag emdna-V10-00-39 902 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 903 - try to solve crash at closure time
1268 904
1269 21-10-2014 MK, tag emdna-V10-00-38 905 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 906 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 907 table when deleted
1272 - update disclaimer 908 - update disclaimer
1273 909
1274 17-10-2014 MK, tag emdna-V10-00-37 910 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 911 - clean code
1276 - G4ITStepManager: one can ask why simulation 912 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 913 - remove useless verbose
1278 914
1279 17-10-2014 MK, tag emdna-V10-00-36 915 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 916 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 917 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 918 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 919
1284 10-10-2014 MK, tag emdna-V10-00-35 920 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 921 Avoid use of std::map at the application level in TimeStepAction
1286 922
1287 07-10-2014 MK, tag emdna-V10-00-34 923 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 924 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 925 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 926 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 927
1292 07-10-2014 MK, tag emdna-V10-00-33 928 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 929 Initialize G4ITStepManager in G4DNAChemistryManager
1294 930
1295 17-09-2014 MK, tag emdna-V10-00-32 931 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 932 Add G4ITStepManager + messenger
1297 Tag before architecture change 933 Tag before architecture change
1298 934
1299 12-07-2014 SI, tag emdna-V10-00-31 935 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 936 Removed obsolete class for electron excitation
1301 937
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 938 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 939 - Get rid of obsolete 'register' keyword in code.
1304 940
1305 05-06-2014 SI, tag emdna-V10-00-29 941 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 942 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D 943 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 944 G4GenericIon usage
1309 - requires G4EMLOW6.39 945 - requires G4EMLOW6.39
1310 946
1311 04-06-2014 MK, tag emdna-V10-00-28 947 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 948 Remove directory management/include/impl
1313 Prepare for release 949 Prepare for release
1314 950
1315 04-06-2014 MK, tag emdna-V10-00-27 951 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 952 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 953 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 954 Avoid usage of molecule iterators as pointers
1319 955
1320 03-06-2014 SI, tag emdna-V10-00-26 956 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 957 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 958
1323 28-05-2014 VI, SI tag emdna-V10-00-25 959 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 960 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 961 Ionisation models switch to use angular generator
1326 interface 962 interface
1327 963
1328 12.05.2014 MK, tag emdna-V10-00-24 964 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 965 Try to remove warnings 4
1330 966
1331 12.05.2014 MK, tag emdna-V10-00-23 967 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 968 Try to remove warnings 3
1333 969
1334 12.05.2014 MK, tag emdna-V10-00-22 970 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 971 Try to remove warnings 2
1336 972
1337 12.05.2014 MK, tag emdna-V10-00-21 973 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 974 Try to remove warnings
1339 975
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 976 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx 977 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 978 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 979 G4EMLOW6.38 needed
1344 980
1345 07-04-2014 SI tag emdna-V10-00-19 981 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 982 Changed faster method interpolation in
1347 G4DNABornIonisationModel 983 G4DNABornIonisationModel
1348 984
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 985 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 986 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 987 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 988 Corrected order of inclusion of some headers and use of <>/"".
1353 989
1354 04-04-2014 MK tag emdna-V10-00-17 990 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 991 Try to solve warnings when G4VERBOSE is off
1356 992
1357 02-04-2014 MK tag emdna-V10 993 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 994 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 995
1360 02-04-2014 MK tag emdna-V10 996 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 997 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 998
1363 02-04-2014 MK tag emdna-V10 999 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 1000 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 1001 -> this part is withdrawn for now
1366 1002
1367 02-04-2014 MK tag emdna-V10 1003 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 1004 - version 2 : try fixing the build error on mac
1369 1005
1370 02-04-2014 MK tag emdna-V10 1006 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 1007 - version 1 : try to fix build errors and warnings on mac
1372 1008
1373 02-04-2014 MK tag emdna-V10 1009 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 1010 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 1011 (G4MemStat & G4MolecularConfiguration)
1376 1012
1377 02-04-2014 MK tag emdna-V10 1013 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 1014 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 1015 (problem coming from having as a friend class a template argument)
1380 1016
1381 02-04-2014 MK tag emdna-V10 1017 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla 1018 - try to fix build error on windows platform
1383 1019
1384 01-04-2014 MK tag emdna-V10 1020 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 1021 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 1022 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 1023
1388 01-04-2014 MK tag emdna-V10 1024 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 1025 - reset CMakeLists.txt
1390 1026
1391 01-04-2014 MK tag emdna-V10 1027 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 1028 - update chemistry
1393 1029
1394 01-04-2014 SI tag emdna-V10-00-05 1030 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 1031 - Modified calculation of secondary kinetic for fast code
1396 1032
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 1033 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 1034 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 1035 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 1036 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 1037
1402 25-03-2014 VS, SI tag emdna-V10-00-03 1038 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 1039 - Added several clear() to vectors for MT
1404 1040
1405 17-03-2014 SI tag emdna-V10-00-02 1041 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc 1042 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 1043 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 1044 to be used with G4EMLOW6.36
1409 1045
1410 12-12-2013 M.K tag emdna-V10-00-01 1046 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 1047 - G4DNAMolecularMaterial: Remove unused variable
1412 1048
1413 12-12-2013 M.K tag emdna-V10-00-00 1049 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to 1050 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 1051 a model is not created at initialisation time
1416 1052
1417 21-11-2013 V.I. tag emdna-V09-06-22 1053 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 1054 - G4ITStepProcessor2 - removed obsolete unused header
1419 1055
1420 01-11-2013 M.K tag emdna-V09-06-21 1056 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 1057 - Correct incorrect singleton check introduced in previous tag
1422 1058
1423 01-11-2013 M.K tag emdna-V09-06-20 1059 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 1060 - Prepare for release bis
1425 1061
1426 01-11-2013 M.K tag emdna-V09-06-19 1062 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 1063 - Prepare for release
1428 1064
1429 10-10-2013 M.K. tag emdna-V09-06-18 1065 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 1066 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 1067
1432 06-10-2013 M.K. tag emdna-V09-06-17 1068 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 1069 - Same as before once again
1434 1070
1435 03-10-2013 M.K. tag emdna-V09-06-16 1071 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 1072 - Same as before
1437 1073
1438 03-10-2013 M.K. tag emdna-V09-06-15 1074 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 1075 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t 1076 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 1077 by the user - stage 1
1442 1078
1443 14-09-2013 M.Asai tag emdna-V09-06-14 1079 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 1080 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 1081 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 1082 with virtual keyword in G4VITProcess.
1447 1083
1448 12-09-2013 M.K. tag emdna-V09-06-13 1084 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 1085 Correction of an inadvertent modification introduced in previous tag
1450 1086
1451 12-09-2013 M.K. tag emdna-V09-06-12 1087 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 1088 Correct bound checks in G4ITManager.icc
1453 1089
1454 16-08-2013 S.I. tag emdna-V09-06-11 1090 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 1091 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 1092
1457 16-08-2013 S.I. tag emdna-V09-06-10 1093 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 1094 Added G4DNAIons
1459 1095
1460 25-06-2013 M.K. tag emdna-V09-06-09 1096 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 1097 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet 1098 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 1099 auto_ptr according to c++ std version
1464 1100
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 1101 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 1102 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 1103 for problem accidentally introduced in previous tag.
1468 1104
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 1105 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 1106 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 1107 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 1108 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 1109 compilation on Windows.
1474 1110
1475 06-06-2013 S.I. tag emdna-V09-06- 1111 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 1112 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 1113 Requires G4EMLOW version 6.33
1478 1114
1479 25-05-2013 M.K. tag emdna-V09-06- 1115 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 1116 *Fix warning compilation in G4KDMap for specific gcc version
1481 1117
1482 24-05-2013 M.K. tag emdna-V09-06- 1118 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi 1119 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 1120 but still not in usage
1485 1121
1486 23-05-2013 M.K. tag emdna-V09-06- 1122 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 1123 * G4KDMap : try fix error on std:ceil call on windows
1488 1124
1489 23-V09-06-03-05-2013 M.K. tag emd 1125 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 1126 * G4KDMap : used deque::iterator
1491 1127
1492 1128
1493 22-05-2013 M.K. tag emdna-V09-06- 1129 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 1130 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 1131 * G4KDMap : pop out elements from map
1496 1132
1497 22-05-2013 M.K. tag emdna-V09-06-00 1133 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global 1134 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager 1135 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 1136 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 1137 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 1138 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 1139 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali 1140 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes 1141 initialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI 1142 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 1143
1508 12-11-2012 M.K tag emdna-V09-05- 1144 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 1145 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 1146 coverity warnings (rev 64993)
1511 1147
1512 06-11-2012 G.Cosmo tag emdna-V09 1148 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 1149 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 1150 for objects in maps...
1515 1151
1516 04-11-2012 M.K. tag emdna-V09-05-33 1152 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 1153 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 1154 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 1155 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 1156 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 1157 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 1158 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 1159 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 1160 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 1161 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 1162 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 1163 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 1164 add "else" before "if" statements and
1529 add variables to avoid ma 1165 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 1166 dna.files : update files (rev 64725)
1531 1167
1532 03-11-2012 S.I. tag emdna-V09-05-32 1168 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 1169 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 1170 classes
1535 1171
1536 24-10-2012 M.K tag emdna-V09 1172 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 1173 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 1174 (previously commented)
1539 1175
1540 23-10-2012 M.K tag emdna-V09 1176 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 1177 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 1178 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 1179
1544 18-10-2012 M.K tag emdna-V09 1180 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 1181 Previous tag did not include history changes
1546 1182
1547 18-10-2012 M.K tag emdna-V09 1183 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 1184 Remove warning
1549 1185
1550 17-10-2012 M.K tag emdna-V09 1186 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 1187 Correct a typo from previous tag
1552 1188
1553 17-10-2012 M.K tag emdna-V09 1189 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 1190 Correct information in headers
1555 Rename G4DNADiffustionControlledM 1191 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 1192 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 1193
1558 01-10-2012 SI, P.Pater tag emdna-V09 1194 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 1195 Force kinetic energy to zero for real killings in models.
1560 1196
1561 12-07-2012 G.Cosmo tag emdna-V09 1197 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 1198 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 1199 constants, in plan to remove implicit inclusion from globals.hh.
1564 1200
1565 11.07.2012 M.K tag emdna-V09 1201 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 1202 Correct warnings introduce in previous tag
1567 1203
1568 11.07.2012 M.K tag emdna-V09 1204 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 1205 Tag to be proposed
1570 1206
1571 25.06.2012 M.K tag emdna-V09-05-21 1207 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 1208 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 1209 Modify molecule's name
1574 1210
1575 21.06.2012 S.I tag emdna-V09-05-20 1211 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte 1212 Update of electron elastic scattering low limit
1577 1213
1578 09.06.2012 M.K tag emdna-V09-05-19 1214 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 1215 Fixed shadowing
1580 1216
1581 04.06.2012 M.K tag emdna-V09-05-18 1217 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 1218 Add G4ITTrackingInteractivity + correct coverity warnings
1583 1219
1584 24.05.2012 M.K tag emdna-V09-05-17 1220 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 1221 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 1222
1587 23.05.2012 M.K tag emdna-V09-05-16 1223 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 1224 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 1225 G4ITStepManager
1590 Prevent call of destructor of G4I 1226 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 1227 G4DNAChemistryManager
1592 1228
1593 23.05.2012 M.K tag emdna-V09-05-15 1229 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 1230 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 1231 when one of its methods is called using a material that is
1596 not defined as a molecule 1232 not defined as a molecule
1597 1233
1598 21.05.2012 M.K tag emdna-V09-05-14 1234 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 1235 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 1236 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 1237 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 1238 Modify all models to use G4DNAMolecularMaterial
1603 1239
1604 14.05.2012 M.K tag emdna-V09-05-13 1240 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 1241 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 1242 Add G4DNADamages
1607 1243
1608 10.05.2012 M.K tag emdna-V09-05-12 1244 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 1245 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 1246 from UserReactionAction::EndProcessing()
1611 1247
1612 08.05.2012 M.K tag emdna-V09-05-11 1248 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 1249 Use inverseErf from CLHEP
1614 1250
1615 03.05.2012 M.K tag emdna-V09-05-10 1251 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 1252 Add erfc function for windows compilator (VC++)
1617 1253
1618 03.05.2012 M.K tag emdna-V09-05-09 1254 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 1255 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 1256
1621 03.05.2012 M.K tag emdna-V09-05-08 1257 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 1258 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 1259 Add new methods in G4ChemistryManager :
1624 - PushMolecule 1260 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 1261 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 1262 Reset() at the end of G4ITStepManager::Process()
1627 1263
1628 30.03.2012 M.K tag emdna-V09-05-07 1264 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 1265 Same as emdna-V09-05-06
1630 1266
1631 30.03.2012 M.K tag emdna-V09-05-06 1267 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 1268 1) Add separate navigator for synchronous tracking
1633 New classes : 1269 New classes :
1634 * G4ITTransportationManager 1270 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 1271 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 1272 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 1273 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 1274 3) Solve bugs with normal and brownian ITTransportation
1639 1275
1640 14.03.2012 M.K tag emdna-V09-05-05 1276 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 1277 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 1278 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 1279 -> become size_t + related changes
1644 * when a poststep process propo 1280 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 1281 => considered as a time, and transportation::computestep
1646 is used 1282 is used
1647 1283
1648 14.03.2012 M.K tag emdna-V09-05-04 1284 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 1285 Fix compilation warning
1650 1286
1651 14.03.2012 M.K tag emdna-V09-05-03 1287 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 1288 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 1289 Fix coverity warnings
1654 1290
1655 18.01.2012 S.I. tag emdna-V09 1291 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 1292 Removal of G4Water* classes in utils
1657 1293
1658 11.01.2012 M.K tag emdna-V09 1294 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 1295 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 1296 concerning the final position of the solvated electron
1661 using Sanche thermalization 1297 using Sanche thermalization
1662 1298
1663 16.12.2011 S.I tag emdna-V09 1299 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 1300 Updated source of cross section file for elastic scattering
1665 1301
1666 25.11.2011 M.K tag emdna-V09 1302 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 1303 Correct a typo in previous tag
1668 1304
1669 25.11.2011 M.K tag emdna-V09 1305 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 1306 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 1307 rather than center of mass in DNAMolecularReaction
1672 1308
1673 21.11.2011 M.K tag emdna-V09 1309 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 1310 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 1311 avoid conflicts with ROOT.
1676 Add short class description (comm 1312 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 1313 in JavaDoc style for doxygen use.
1678 1314
1679 21.11.2011 M.K tag emdna-V09 1315 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1316 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1317 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1318 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1319 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1320 when the time steps returned by the time stepper
1685 and the processes are equal 1321 and the processes are equal
1686 Improve verbose 1322 Improve verbose
1687 1323
1688 21.11.2011 M.K tag emdna-V09 1324 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1325 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1326 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1327 Correct verbose in new models & process
1692 1328
1693 18.11.2011 M.K tag emdna-V09 1329 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl 1330 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1331 in G4DNAChemistryManager
1696 1332
1697 18.11.2011 M.K tag emdna-V09 1333 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1334 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1335 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1336 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1337
1702 15.11.2011 G.Cosmo tag emdna-V09 1338 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1339 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1340 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1341 Windows.
1706 Fixed compilation warning on icc 1342 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1343 G4MolecularDecayTable.cc
1708 1344
1709 10.11.2011 M.K. tag emdna-V09 1345 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1346 Fix a bug in G4DNATransformElectronModel
1711 1347
1712 10.11.2011 M.K. tag emdna-V09 1348 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1349 Clean classes for release
1714 Add comment into source 1350 Add comment into source
1715 Change name of some methods 1351 Change name of some methods
1716 Transform two independent singlet 1352 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1353 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1354 (ITStepMan + DNAChemMan)
1719 1355
1720 10.11.2011 M.K. tag emdna-V09 1356 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1357 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1358 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1359 the chemistryManager.
1724 1360
1725 09.11.2011 M.K. tag emdna-V09 1361 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1362 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1363 in G4TrackListNode.
1728 Simplify and improve the use of d 1364 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1365 Add more convenient methods in userReactionAction
1730 1366
1731 08.11.2011 M.K. tag emdna-V09 1367 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1368 Fix coverity warnings
1733 1369
1734 07.11.2011 M.K. tag emdna-V09 1370 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1371 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1372 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1373 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1374 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1375 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1376 Clean classes for release
1741 1377
1742 03.11.2011 M.K. tag emdna-V09 1378 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1379 Add dna libs in sources.cmake
1744 1380
1745 03.11.2011 M.K. tag emdna-V09 1381 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1382 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1383 Add dna includes in sources.cmake
1748 1384
1749 01.11.2011 M.K. tag emdna-V09 1385 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1386 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1387 G4ITTransportation, G4TrackList on Windows
1752 1388
1753 01.11.2011 G.Cosmo 1389 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1390 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1391 updated GNUMakefiles to have it properly defined.
1756 1392
1757 31.10.2011 M.K tag emdna-V09-04-35 1393 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1394 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1395 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives 1396 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1397 Fix windows compilation errors & warnings
1762 1398
1763 28.10.2011 M.K tag emdna-V09-04-34 1399 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1400 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1401 Plus remove obsolete G4Exception
1766 1402
1767 28.10.2011 M.K tag emdna-V09-04-33 1403 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1404 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1405 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1406 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1407 to models
1772 1408
1773 27.10.2011 M.K tag emdna-V09-04-32 1409 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1410 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1411 coverity errors.
1776 1412
1777 26.10.2011 M.K tag emdna-V09-04-31 1413 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared 1414 change std::shared_ptr to CLHEP::shared_ptr
1779 1415
1780 26.10.2011 M.K. tag emdna-V09-04-30 1416 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1417 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1418 G4MolecularConfiguration::fManager added
1783 1419
1784 26.10.2011 M.K. tag emdna-V09-04-29 1420 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1421 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1422 Add electron solvatation process & models
1787 Add chemical processes 1423 Add chemical processes
1788 1424
1789 21.10.2011 M.K. tag emdna-V09-04-28 1425 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model 1426 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1427 emdna-V09-04-24
1792 1428
1793 21.10.2011 M.K. tag emdna-V09-04-27 1429 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1430 CMake fixes from emdna-V09-04-24
1795 1431
1796 21.10.2011 M.K. tag emdna-V09-04-26 1432 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous 1433 Bug fixes and new dev from the previous tag
1798 1434
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1435 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1436 Extension of ionisation by HZE proposed by Z. Francis
1801 1437
1802 20.10.2011 M.K. tag emdna-V09-04-24 1438 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1439 Bug fixes and new dev from the previous tag
1804 1440
1805 07.10.2011 M.K. tag emdna-V09-04-23 1441 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files 1442 First tag with "molecules" files
1807 1443
1808 07.10.2011 M.K. tag emdna-V09-04-22 1444 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1445 Add molecules+management directory
1810 First tag with "management" files 1446 First tag with "management" files
1811 1447
1812 09.09.2011 G.Folger tag emdna-V09 1448 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer 1449 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc 1450 G4DNAMoleculeManager.cc
1815 1451
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1452 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1453 Updated sources.make and CMakeLists.txt
1818 1454
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1455 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1456 Reorganized whole architecture.
1821 1457
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1458 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1459 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1460 if no deexcitation)
1825 1461
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1462 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1463 Changed code (em0006) numbering for G4Exception
1828 1464
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1465 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1466 Switched to new G4Exception syntax
1831 1467
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1468 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1469 Added enhanced debug information in ionisation models
1834 1470
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1471 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1472 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1473
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1474 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1475 Removed obsolete information.
1840 1476
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1477 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1478 Updated deexcitation initialization in ionization models.
1843 1479
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1480 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1481 Coverity warnings removal
1846 1482
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1483 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1484 - Increased energy limits for
1849 G4DNAChargeIncrease 1485 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1486 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1487 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1488 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1489 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade 1490 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1491 of ionisation classes for Auger e-
1856 1492
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1493 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1494 Further compilation warnings removal
1859 1495
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1496 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1497 Compilation warnings removal
1862 1498
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1499 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1500 added Atomic Deexcitation to Ionisation Models
1865 1501
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1502 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1503 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1504 G4DNADingfelderChargeIncreaseModel.cc.
1869 1505
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1506 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1507 Changed process sub-type numbering.
1872 1508
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1509 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1510 Fixed coverity warnings.
1875 1511
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1512 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1513 Updated all models for handling of variable density.
1878 1514
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1515 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1516 Addition of dependencies to configuration files.
1881 1517
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1518 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1519 Addition of all files.
1884 1520
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1521 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1522 Creation of dna sub-package in electromagnetic category.