| Geant4 Cross Reference |
1 # Category emdna History << 1 =========================================================
2 << 2 Geant4 - an Object-Oriented Toolkit for Simulation in HEP
3 See `CONTRIBUTING.rst` for details of **requir << 3 =========================================================
4 which **must** added in reverse chronological << 4
5 It must **not** be used as a substitute for wr << 5 Category History file
6 << 6 ---------------------
7 ---------------------------------------------- << 7 This file should be used by G4 developers and category coordinators
8 << 8 to briefly summarize all major modifications introduced in the code
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) << 9 and keep track of all category-tags.
10 - missing value in DNA PTB Ionization Structur << 10 It DOES NOT substitute the CVS log-message one should put at every
11 - missing GetMaterial() in DNA PTB Excitation << 11 committal in the CVS repository !
12 << 12
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) << 13 ----------------------------------------------------------
14 - Modified the molecule names of OH, HO2, O in << 14 * Reverse chronological order (last date on top), please *
15 Each molecule configuration has a molecule d << 15 ----------------------------------------------------------*
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with <<
35 of std::function in G4OctreeFinder. <<
36 <<
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) <<
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with <<
51 Added missing declarations for TG4MoleculeSh <<
52 Based on [GitHub PR#69](https://github.com/G <<
53 <<
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) <<
106 - Use G4FindDataDir to access data libraries i <<
107 <<
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) <<
109 - correct fastercode section for dna opt6 <<
110 <<
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) <<
112 - correct scavenger counter for oxygen <<
113 <<
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) <<
115 - Fixed the K shell bug in G4DNARuddIonisation <<
116 <<
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) <<
118 - improved equilibrium processes, introduced G <<
119 <<
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) <<
121 - In navigation classes, removed references to <<
122 which is now deprecated. <<
123 <<
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) <<
125 - Removed references to unused G4GRSSolid and <<
126 <<
127 ## 2023-08-29 (emdna-V11-01-18) <<
128 - Fix minor/obvious Coverity issues <<
129 <<
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) <<
131 - Apply core clang-tidy fixes plus those for <<
132 - Cons/destructor modernization <<
133 - Readability and logic for conditionals/boo <<
134 <<
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) <<
136 - Apply patch from [GitHub PR 58](https://gith <<
137 - Use std::erfc to avoid precision loss <<
138 - Remove unused header <<
139 <<
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) <<
141 - minor correction for DNA material in option6 <<
142 <<
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) <<
144 - use analytical method for DNA material in op <<
145 <<
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 <<
147 - G4DNARuddIonisationExtendedModel - model re- <<
148 threads, applicable for scaled energy interv <<
149 an ion data is not available proton x-sectio <<
150 used, sampling of delta-electron is done usi <<
151 <<
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) <<
153 - Modified DNA cross section file name to new <<
154 <<
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) <<
156 - Add DNA cross section to dna_option6 <<
157 <<
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) <<
159 - Fix Compilation warnings on XCode <<
160 <<
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) <<
162 - correct the initial values of G4DNAEventSche <<
163 <<
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) <<
165 - add time structure (pulsed beam) to water ra <<
166 <<
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) <<
168 - correct KDTree bug <<
169 <<
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) <<
171 - icsd physicslist: deleted unused model, <<
172 - Apdated RegisterModel function with new stru <<
173 - added model data to G4DNAMaterialManager sin <<
174 <<
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) <<
176 - Fixed compilation warning on macOS/XCode for <<
177 in G4DNAVacuumModel::Initialise(). <<
178 <<
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) <<
180 - Introduced G4DNAMaterialManager to manage av <<
181 and keeps DNA cross section data in one thread <<
182 - minor change in G4VDNAModel <<
183 <<
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) <<
185 - reorganize multiple material model of PTB mo <<
186 G4VDNAModel plays like a data layer for multip <<
187 The concrete models are independent of G4DNAMo <<
188 <<
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) <<
190 - replaced string to material index and clean <<
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, <<
192 G4DNAPTBExcitationStructure) - PTB models <<
193 - added material pointer members for each conc <<
194 - removed unused objects (G4DataVector()) <<
195 <<
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) <<
197 - clean G4DNAModelInterface file for the model <<
198 <<
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) <<
200 - fix coverity of G4DNARuddIonisationExtendedM <<
201 (Uninitialized scalar variable) from cand1 ana <<
202 <<
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 <<
204 - G4DNARuddIonisationExtendedModel - fixed com <<
205 radioactive decay module - before this upd <<
206 only 5 ions have data needed for this mode <<
207 model scaling relation to the carbon ion i <<
208 no data; low-energy limit is used now more <<
209 but not killed, because they may have radi <<
210 lines are removed from the class <<
211 <<
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) <<
213 - Fixed more compilation warnings for implicit <<
214 <<
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) <<
216 - delete unused tests in dna (G4DNAProcessTest <<
217 <<
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) <<
219 - Fixed compilation warnings for implicit type <<
220 <<
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 <<
222 - G4DNAUeharaScreenedRutherfordElasticModel - <<
223 low and high energy limit for the model; r <<
224 <<
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) <<
226 - Fix Coverity issues for ref-09 <<
227 <<
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) <<
229 - minor correction of IRT-syn model (chemistry <<
230 after 1 ps. <<
231 <<
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- <<
233 - Add nitrogen models from PTra code <<
234 <<
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) <<
236 - Fixed minor mistake of file name in G4DNARPW <<
237 - Added protection for HighEnergyLimit/LowEner <<
238 G4DNARPWBAExcitationModel <<
239 <<
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) <<
241 - Fixed compilation warnings on Intel/icx comp <<
242 but not used in G4ITNavigator2. <<
243 <<
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) <<
245 - Fix user's report for IRT model. <<
246 If the first IRTSampling won't give any rea <<
247 <<
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) <<
249 - Fix Coverity static analysis for ref-08 <<
250 uninit_member in G4DNAMillerGreenExcitationMo <<
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI <<
252 Use auto & instead of auto : G4ITFinder, G4DN <<
253 <<
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) <<
255 - Resolve dependency inconsistencies : <<
256 dna/management/include/G4ChemicalMoleculeF <<
257 dna/management/include/G4UserMeshAction.hh <<
258 dna/management/include/G4OctreeFinder.hh i <<
259 <<
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) <<
261 - Partially resolve dependency inconsistencies <<
262 - NB: cannot be resolved fully without intro <<
263 G4emdna-man, G4emdna-molman, G4emdna-utils <<
264 <<
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) <<
266 - Define G4CT_MAX_COUNT for changing "compile <<
267 errors on NVHPC compiler. <<
268 <<
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 <<
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo <<
271 cleanup according to the recent G4VEmProce <<
272 headers are moved to source; C++11 keyward <<
273 <<
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) <<
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela <<
276 G4DNACPA100IonisationModel.cc, G4DNAChampion <<
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo <<
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx <<
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis <<
280 G4DNASancheExcitationModel.cc : <<
281 use G4FindDataDir("G4LEDATA") to find datase <<
282 <<
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) <<
284 - correct DNA ion definitions in G4DNARuddIoni <<
285 <<
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) <<
287 - G4Octree : fixed Coverity warning. <<
288 <<
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) <<
290 - update data structure to improve performance <<
291 <<
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) <<
293 - G4ITTransportation: fixed misuse of bitwise <<
294 <<
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) <<
296 - Added missing headers. <<
297 <<
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) <<
299 - change the scavenging filter of the IRT beyo <<
300 <<
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) <<
302 - Add localthread for fUse of G4VMoleculeCount <<
303 <<
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa <<
305 - Incorporation of model based on RPWBA to tra <<
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI <<
307 <<
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) <<
309 - add UserBrownianAction in G4DNABrownianTrans <<
310 G4DNAMolecularDissociation <<
311 - replace G4int by int64_t for width integer t <<
312 - add fResetScavenger in G4SchedulerMessenger <<
313 <<
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) <<
315 - save local instances for recurrent access to <<
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo <<
317 G4DNARuddIonisationModel <<
318 - use G4Pow and G4Log instead of std::pow and <<
319 - inside G4DNARuddIonisationExtendedModel comm <<
320 inside G4DNAGenericIonsManager <<
321 <<
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) <<
323 - Debug the report #2235 which might be relate <<
324 - Clean code <<
325 - Delete G4ITFinder.cc <<
326 <<
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) <<
328 - save local instances for recurrent access to <<
329 G4DNADingfelderChargeDecreaseModel and G4DNADi <<
330 - use G4Pow and G4Log instead of std::pow and <<
331 <<
332 ## 2022-03-18 SI (emdna-V11-00-10) <<
333 - add protection in G4DNACPA100IonisationModel <<
334 <<
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) <<
336 - remove macro commands to control the chemist <<
337 (creating models in G4SchedulerMessenger can m <<
338 - add flag OctreeFinder in IRT_syn's Initializ <<
339 <<
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) <<
341 - add macro commands to control the chemistry <<
342 parameters including the chemical molecules an <<
343 <<
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) <<
345 - optimize IRT-syn model, use reaction radius <<
346 - delete G4VReactionType, G4DNAReactionTypeMan <<
347 G4DNAPartiallyDiffusionControlled <<
348 - delete G4DNAIRT_geomtries <<
349 <<
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) <<
351 - `G4ITTransportation`: Make `PrepareState` mo <<
352 - `G4DNAPolyNucleotideReactionProcess`: <<
353 - Move `PrepareState` and `State` macros int <<
354 - Make `PrepareState` more function-like, ex <<
355 - Move variable `pMoleculeA` under `G4VERBOS <<
356 <<
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) <<
358 - add the condition of water material for the <<
359 warning in G4DNAMolecularDissociation::DecayIt <<
360 <<
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) <<
362 - modify the macro in G4Molecule.cc and G4ITTy <<
363 <<
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) <<
365 - Prefer pointer to `const G4Material` if poss <<
366 <<
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) <<
368 - Remove useless `const_cast` of `G4VSensitive <<
369 <<
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) <<
371 - add G4DNAPolyNucleotideReactionProcess, G4VD <<
372 files for DNA damage applications <<
373 <<
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) <<
375 - Change to new Markdown History format <<
376 <<
377 --- <<
378 <<
379 # History entries prior to 11.0 <<
380 <<
381 8-11-2021, H. Tran, emdna-V10-07-15 <<
382 - corrected Circular dependencies for mesoscop <<
383 - corrected the problem in IRT <<
384 <<
385 4-11-2021, H. Tran, emdna-V10-07-14 <<
386 - define a G4FakeParticleID::fLastValue in the <<
387 delete G4FakeParticleID.cc, <<
388 solve arithmetic problems, <<
389 Added new mesoscopic model for dna chemistry <<
390 <<
391 21-10-2021, W.G.Shin, emdna-V10-07-13 <<
392 - Added a virtual classes for DNA geometry - G <<
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul <<
394 G4ITModelProcessor, G4Sch <<
395 G4DNAMolecularReactionTab <<
396 <<
397 23-09-2021, A. Ribon, emdna-V10-07-12 <<
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit <<
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh <<
400 G4DNAChargeIncrease, G4DNAElectronSolvation, <<
401 G4DNASecondOrderReaction, G4DNAElectronHoleR <<
402 G4DNABrownianTransportation : replaced hardw <<
403 with enum values introduced in the new class <<
404 <<
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 <<
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati <<
407 G4VLEPSModel - updated interfaces to G4Physi <<
408 <<
409 16-07-2021, D. Sakata, emdna-V10-07-10 <<
410 - Fixed initialization error in G4DNAELSEPAEla <<
411 <<
412 28-06-2021, G. Cosmo, emdna-V10-07-09 <<
413 - Fixed compilation error in G4ITMultiNavigato <<
414 enabled. <<
415 <<
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 <<
417 - Added new classes G4DNADiracRMatrixExcitatio <<
418 G4DNAQuinnPlasmonExcitatio <<
419 G4DNARelativisticIonisatio <<
420 G4DNAPlasmonExcitation <<
421 - Modified G4DNAELSEPAElasticModel for gold <<
422 <<
423 9-05-2021, H.Tran, tag emdna-V10-07-07 <<
424 - Add IRT-syn model <<
425 <<
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 <<
427 - Migrate build to modular CMake API <<
428 <<
429 27-04-2021, H.Tran, tag emdna-V10-07-05 <<
430 - G4DNAElectronHoleRecombination: added Octree <<
431 - G4DNABrownianTransportation: modified AlongS <<
432 - added OctreeFinder and IRTUtils <<
433 <<
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 <<
435 - G4DNABornAngle, G4DNARuddAngle - updated pri <<
436 <<
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 <<
438 - Move DNA-related Unit Tests from lowenergy/t <<
439 <<
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 <<
441 - Fixed dependency on g4tools, now moved to ex <<
442 <<
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 <<
444 - G4DNAElectronHoleRecombination <<
445 Dissociation channel of electron-hole recomb <<
446 G4EmDNAChemistry, _option1, _option2, _optio <<
447 - G4DNAWaterDissociationDisplacer <<
448 Added the fragment displacement for new diss <<
449 16
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 17 29-10-2020, G.Cosmo, tag emdna-V10-06-12
451 - Fix thread contention on mutable data in G4D 18 - Fix thread contention on mutable data in G4DNAMolecularMaterial; might
452 help resolving observed crashes in MT runs. 19 help resolving observed crashes in MT runs.
453 Some code cleanup. << 20 Some code cleanup.
454 21
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 22 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11
456 - G4DNAMolecularMaterial - removed commented l 23 - G4DNAMolecularMaterial - removed commented lines
457 - History file fixed 24 - History file fixed
458 25
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 26 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10
460 - G4DNAMolecularMaterial - attempt to fix nigh 27 - G4DNAMolecularMaterial - attempt to fix nightly problems
461 in chem6 example - do not delete instance of 28 in chem6 example - do not delete instance of the singleton
462 29
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 30 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09
464 - Added dependency on analysis/g4tools in GNUm 31 - Added dependency on analysis/g4tools in GNUmakefile,
465 required after analysis update (analysis-V10 32 required after analysis update (analysis-V10-06-05)
466 33
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 34 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-08
468 - Fixed coverity warning 35 - Fixed coverity warning
469 36
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 37 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-07
471 - Fixed coverity warnings 38 - Fixed coverity warnings
472 - Fix of IRT bug 39 - Fix of IRT bug
473 (protection for the crash induced by empty re 40 (protection for the crash induced by empty reaction set)
474 41
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 42 28-05-2020, B.Morgan, tag emdna-V10-06-06
476 - Add missing G4analysismng module dependency 43 - Add missing G4analysismng module dependency to G4emdna-utils
477 44
478 20-05-20: W.G.Shin emdna-V10-06-05 45 20-05-20: W.G.Shin emdna-V10-06-05
479 - Revised displacement of OH radicals of B1A1 46 - Revised displacement of OH radicals of B1A1 dissociation
480 based on momentum conservation in G4DNAWaterDi 47 based on momentum conservation in G4DNAWaterDissociationDisplacer class
481 - Added missing History 48 - Added missing History
482 49
483 26-04-20: W.G.Shin emdna-V10-06-04 50 26-04-20: W.G.Shin emdna-V10-06-04
484 - Fixed coverity test 51 - Fixed coverity test
485 52
486 15-04-20: G.Cosmo emdna-V10-06-03 53 15-04-20: G.Cosmo emdna-V10-06-03
487 - G4MoleculeDefinition: copy constructor and a 54 - G4MoleculeDefinition: copy constructor and assignment operator
488 are not allowed (as for G4ParticleDefinition 55 are not allowed (as for G4ParticleDefinition). Now deleted.
489 56
490 19-02-20: W.G.Shin emdna-V10-06-02 57 19-02-20: W.G.Shin emdna-V10-06-02
491 - Fixed memory issue on G4DNAMolecularReaction 58 - Fixed memory issue on G4DNAMolecularReactionTable
492 - Revised headeres of IRT classes 59 - Revised headeres of IRT classes
493 60
494 12-02-20: W.G.Shin emdna-V10-06-01 61 12-02-20: W.G.Shin emdna-V10-06-01
495 - Added protections floating point exception i 62 - Added protections floating point exception in G4DNAIRT class
496 63
497 10-01-20: W.G.Shin emdna-V10-06-00 64 10-01-20: W.G.Shin emdna-V10-06-00
498 - Added classes for IRT 65 - Added classes for IRT
499 - Added features in management classes for IRT 66 - Added features in management classes for IRT (G4ITReaction,
500 G4ITModelProcessor ...) 67 G4ITModelProcessor ...)
501 - Added features in G4DNAMolecularReactionTabl 68 - Added features in G4DNAMolecularReactionTable for GFDE
502 - Added molecules of Plante et al. (2017) (Oxy 69 - Added molecules of Plante et al. (2017) (Oxygen, O2, O3, HO2)
503 70
504 15-11-19: G.Cosmo emdna-V10-05-11 71 15-11-19: G.Cosmo emdna-V10-05-11
505 - Fixed cases of implicit type conversions fro 72 - Fixed cases of implicit type conversions from size_t to G4int.
506 73
507 8-11-19: HT, tag emdna-V10-05-10 74 8-11-19: HT, tag emdna-V10-05-10
508 - Fixed the exception divide by zero of diffus 75 - Fixed the exception divide by zero of diffusionCoefficient in
509 G4DNABrownianTransportation::AlongStepGetPhysi 76 G4DNABrownianTransportation::AlongStepGetPhysicalInteractionLength
510 for the case of static molecules (DNA) (diffus 77 for the case of static molecules (DNA) (diffusionCoefficient = 0)
511 78
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 79 24-10-19: J.Apostolakis, tag emdna-V10-05-09
513 - Enabled G4ItNavigator{1,2} to flag if it enc 80 - Enabled G4ItNavigator{1,2} to flag if it encounters new type
514 of external physical volume (meant for adapt 81 of external physical volume (meant for adapting external navigators)
515 82
516 19-10-19: WGS, SI, tag emdna-V10-05-08 83 19-10-19: WGS, SI, tag emdna-V10-05-08
517 - Added new model G4DNAELSEPAElasticModel 84 - Added new model G4DNAELSEPAElasticModel
518 85
519 11-10-19: WGS, SI, tag emdna-V10-05-07 86 11-10-19: WGS, SI, tag emdna-V10-05-07
520 - G4DNAOneStepThermalizationModel.* : 87 - G4DNAOneStepThermalizationModel.* :
521 added Kreipl and Meesungnoen amorphous ice mod 88 added Kreipl and Meesungnoen amorphous ice models
522 - G4DNAWaterDissociationDisplacer* : updated 89 - G4DNAWaterDissociationDisplacer* : updated
523 90
524 03-06-2019, MK, tag emdna-V10-05-06 91 03-06-2019, MK, tag emdna-V10-05-06
525 - Fix GCC9 warnings 92 - Fix GCC9 warnings
526 93
527 26-03-2019, HT, tag emdna-V10-05-05 94 26-03-2019, HT, tag emdna-V10-05-05
528 - Added G4DNAMolecule 95 - Added G4DNAMolecule
529 96
530 10-03-2019, MK, tag emdna-V10-05-04 97 10-03-2019, MK, tag emdna-V10-05-04
531 - Fix reaction site issue 98 - Fix reaction site issue
532 - Chemistry: clarify pointer ownership, clean 99 - Chemistry: clarify pointer ownership, clean code
533 100
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 101 11-03-2019, G.Cosmo, tag emdna-V10-05-03
535 - Fixed typos in printouts in G4MolecularConfi 102 - Fixed typos in printouts in G4MolecularConfiguration, G4VITRestDiscreteProcess,
536 G4VITRestProcess, G4DNAElectronHoleRecombina 103 G4VITRestProcess, G4DNAElectronHoleRecombination.
537 104
538 18-01-2019, HT, tag emdna-V10-05-02 105 18-01-2019, HT, tag emdna-V10-05-02
539 - Transformed the exception into warning in G4 106 - Transformed the exception into warning in G4DNAMolecularDissociation
540 107
541 28-12-2018, MK, tag emdna-V10-05-01 108 28-12-2018, MK, tag emdna-V10-05-01
542 DEV-300 : G4DNAChemistryManager clarify pointe 109 DEV-300 : G4DNAChemistryManager clarify pointer ownership
543 110
544 05-01-2019, HT, tag emdna-V10-05-00 111 05-01-2019, HT, tag emdna-V10-05-00
545 - moved the checking position of track status 112 - moved the checking position of track status
546 in G4ITStepProcessor::SetInitialStep() 113 in G4ITStepProcessor::SetInitialStep()
547 114
548 01-09-2018, SI, tag emdna-V10-04-10 115 01-09-2018, SI, tag emdna-V10-04-10
549 renamed tag 116 renamed tag
550 117
551 01-09-2018, SI, tag emdna-v10-04-09 118 01-09-2018, SI, tag emdna-v10-04-09
552 - bugzilla 2084 119 - bugzilla 2084
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id 120 https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2084
554 121
555 30-07-2018, SI, tag emdna-V10-04-08 122 30-07-2018, SI, tag emdna-V10-04-08
556 - included upper energy limit of models (2) 123 - included upper energy limit of models (2)
557 124
558 29-07-2018, SI, tag emdna-V10-04-07 125 29-07-2018, SI, tag emdna-V10-04-07
559 - included upper energy limit of models 126 - included upper energy limit of models
560 127
561 01-07-2018, SI, tag emdna-V10-04-06 128 01-07-2018, SI, tag emdna-V10-04-06
562 - added protection in Auger emission 129 - added protection in Auger emission
563 130
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 131 30-06-2018, MS, ZF, SI tag emdna-V10-04-05
565 - updated Si mass in G4DNAGenericIonsManager 132 - updated Si mass in G4DNAGenericIonsManager
566 133
567 22-06-2018, SI tag emdna-V10-04-04 134 22-06-2018, SI tag emdna-V10-04-04
568 - fixed warnings in lepts models 135 - fixed warnings in lepts models
569 136
570 14-05-2018, SI tag emdna-V10-04-03 137 14-05-2018, SI tag emdna-V10-04-03
571 - chemistry update by Mathieu 138 - chemistry update by Mathieu
572 139
573 01-05-2018, SI tag emdna-V10-04-02 140 01-05-2018, SI tag emdna-V10-04-02
574 - chemistry update by Mathieu 141 - chemistry update by Mathieu
575 142
576 09-02-2018, M.Asai tag emdna-V10-04-01 143 09-02-2018, M.Asai tag emdna-V10-04-01
577 - G4DNAMolecularMaterial.cc : 144 - G4DNAMolecularMaterial.cc :
578 GetDensityTableFor() and GetNumMolPerVolTabl 145 GetDensityTableFor() and GetNumMolPerVolTableFor() methods are accepted
579 at G4State_Init rather than G4State_Idle. 146 at G4State_Init rather than G4State_Idle.
580 - Co-works with run-V10-04-01 and global-V10-0 147 - Co-works with run-V10-04-01 and global-V10-04-01.
581 148
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 149 21-12-2017, G.Cosmo tag emdna-V10-04-00
583 - Fixed self-consistency in headers (missing # 150 - Fixed self-consistency in headers (missing #include) in G4IosFlagsSaver,
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff 151 G4KDNode, G4MoleculeIterator and G4LEPTSDiffXS.
585 Fixed spurious definition of G4IT namespace 152 Fixed spurious definition of G4IT namespace in G4ITMultiNavigator header.
586 Thanks to Raphael Isemann for reporting thes 153 Thanks to Raphael Isemann for reporting these.
587 154
588 01-11-2017, MK tag emdna-V10-03-30 155 01-11-2017, MK tag emdna-V10-03-30
589 - remove models/test directory 156 - remove models/test directory
590 157
591 31-10-2017, JA ( tag missing ) 158 31-10-2017, JA ( tag missing )
592 - G4KDNode.hh: Add missing included file - nee 159 - G4KDNode.hh: Add missing included file - needed in test
593 160
594 16-08-2017, SI tag emdna-V10-03-28 161 16-08-2017, SI tag emdna-V10-03-28
595 - updated variable types in models 162 - updated variable types in models
596 163
597 10-08-2017, SI tag emdna-V10-03-27 164 10-08-2017, SI tag emdna-V10-03-27
598 - test 165 - test
599 166
600 10-08-2017, SI tag emdna-V10-03-26 167 10-08-2017, SI tag emdna-V10-03-26
601 - same as previous 168 - same as previous
602 169
603 09-08-2017, SI tag emdna-V10-03-25 170 09-08-2017, SI tag emdna-V10-03-25
604 - same as previous 171 - same as previous
605 172
606 09-08-2017, SI tag emdna-V10-03-24 173 09-08-2017, SI tag emdna-V10-03-24
607 - G4DNAEmfietzoglouIonisationModel: added prot 174 - G4DNAEmfietzoglouIonisationModel: added protection for out of bound access
608 175
609 03-08-2017, VI tag emdna-V10-03-23 176 03-08-2017, VI tag emdna-V10-03-23
610 - G4DNAExcitation, G4DNAIonisation - make cohe 177 - G4DNAExcitation, G4DNAIonisation - make coherent model initialisation
611 178
612 28-07-2017, SI, tag emdna-V10-03-22 179 28-07-2017, SI, tag emdna-V10-03-22
613 - added stationary mode flag to CPA100 ionisat 180 - added stationary mode flag to CPA100 ionisation.
614 181
615 04-07-2017, SI, tag emdna-V10-03-21 182 04-07-2017, SI, tag emdna-V10-03-21
616 - added tagging of atom. deexc. products in io 183 - added tagging of atom. deexc. products in ionisation models.
617 184
618 31-05-2017, SM, tag emdna-V10-03-20 185 31-05-2017, SM, tag emdna-V10-03-20
619 - Correct windows issues with path of diff. CS 186 - Correct windows issues with path of diff. CS data file.
620 187
621 31-05-2017, SI, tag emdna-V10-03-19 188 31-05-2017, SI, tag emdna-V10-03-19
622 - roll-back (Windows issues with previous tag) 189 - roll-back (Windows issues with previous tag)
623 190
624 24-05-2017, SI, tag emdna-V10-03-18 191 24-05-2017, SI, tag emdna-V10-03-18
625 - added tagging of atom. deexc. products in io 192 - added tagging of atom. deexc. products in ionisation models.
626 193
627 11-05-2017, VI tag emdna-V10-03-17 194 11-05-2017, VI tag emdna-V10-03-17
628 - fix for gcc 7.1 warnings in G4DNACrossSectio 195 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
629 196
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 197 10-05-2017, NL, MK, SI, tag emdna-V10-03-16
631 - fix for gcc 7.1 warnings in G4DNACrossSectio 198 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
632 199
633 03-05-2017, SM, tag emdna-V10-03-15 200 03-05-2017, SM, tag emdna-V10-03-15
634 - add the new G4DNADummyModel and allow the co 201 - add the new G4DNADummyModel and allow the combination of G4VEmModel and G4VDNAModel in G4DNAModelInterface.
635 202
636 27-04-2017, SM, tag emdna-V10-03-14 203 27-04-2017, SM, tag emdna-V10-03-14
637 - correct small typo mistakes. 204 - correct small typo mistakes.
638 205
639 27-04-2017, SM, tag emdna-V10-03-13 206 27-04-2017, SM, tag emdna-V10-03-13
640 - update Models/G4DNAModelInterface to correct 207 - update Models/G4DNAModelInterface to correctly use G4DNAMolecularMaterial
641 208
642 10-03-2017, MK, tag emdna-V10-03-12 209 10-03-2017, MK, tag emdna-V10-03-12
643 - update utils/GNUmakefile 210 - update utils/GNUmakefile
644 211
645 13-02-2017, MK, tag emdna-V10-03-11 212 13-02-2017, MK, tag emdna-V10-03-11
646 - G4DNAMolecularMaterial: update doxygen doc 213 - G4DNAMolecularMaterial: update doxygen doc
647 214
648 13-02-2017, MK, tag emdna-V10-03-10 215 13-02-2017, MK, tag emdna-V10-03-10
649 - G4DNAMolecularMaterial: 216 - G4DNAMolecularMaterial:
650 remove newly introduced methods, add fatal e 217 remove newly introduced methods, add fatal exception if used
651 add doxygen documentation 218 add doxygen documentation
652 219
653 10-02-2017, MK, tag emdna-V10-03-09 220 10-02-2017, MK, tag emdna-V10-03-09
654 - Introducing G4PhysChemIO 221 - Introducing G4PhysChemIO
655 - Move call to G4TrackList::Pop(track) from G4 222 - Move call to G4TrackList::Pop(track) from G4ITTrackingManager
656 to G4ITTrackHolder. And make sure track stat 223 to G4ITTrackHolder. And make sure track status is set to fStopAndKill
657 when G4ITTrackHolder::PushToKill is called. 224 when G4ITTrackHolder::PushToKill is called.
658 225
659 09-02-2017, MK, tag emdna-V10-03-08 226 09-02-2017, MK, tag emdna-V10-03-08
660 - G4KDNode.hh: remove unused G4ThreeVector hea 227 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation 228 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t 229 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization 230 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K 231 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665 232
666 24-01-2017, SM, tag emdna-V10-03-07 233 24-01-2017, SM, tag emdna-V10-03-07
667 - add a ifdef to remove a warning (windows onl 234 - add a ifdef to remove a warning (windows only) related to the use of several levels of map.
668 235
669 23-01-2017, SM, tag emdna-V10-03-06 236 23-01-2017, SM, tag emdna-V10-03-06
670 - add missing G4DNAModelInterface files (.hh a 237 - add missing G4DNAModelInterface files (.hh and .cc) to the source.cmake
671 238
672 23-01-2017, SM CV, tag emdna-V10-03-05 239 23-01-2017, SM CV, tag emdna-V10-03-05
673 - add new G4DNAPTB* classes and the structure 240 - add new G4DNAPTB* classes and the structure of the new material management system
674 241
675 14-01-2017, MK, tag emdna-V10-02-37 242 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingMan 243 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction 244 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Schedule 245 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679 246
680 28-12-2016, SI, tag emdna-V10-03-04 247 28-12-2016, SI, tag emdna-V10-03-04
681 - extended upper energy limit of protons for 248 - extended upper energy limit of protons for
682 G4DNARuddIonisationExtendedModel 249 G4DNARuddIonisationExtendedModel
683 250
684 27-12-2016, SI, tag emdna-V10-03-03 251 27-12-2016, SI, tag emdna-V10-03-03
685 - updated references of CPA100 classes 252 - updated references of CPA100 classes
686 253
687 23-12-2016, SI, tag emdna-V10-03-02 254 23-12-2016, SI, tag emdna-V10-03-02
688 - updated sources.cmake 255 - updated sources.cmake
689 256
690 23-12-2016, SI, tag emdna-V10-03-01 257 23-12-2016, SI, tag emdna-V10-03-01
691 - commit of first CPA100 classes, part 2 258 - commit of first CPA100 classes, part 2
692 259
693 21-12-2016, SI, tag emdna-V10-03-00 260 21-12-2016, SI, tag emdna-V10-03-00
694 - commit of first CPA100 classes 261 - commit of first CPA100 classes
695 262
696 27-11-2016, MK, tag emdna-V10-02-36 263 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 264 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 265 - G4DNADamages -> G4DNADamage
699 266
700 17-11-2016, MK, tag emdna-V10-02-35 267 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 268 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 269
703 16-11-2016, MK, tag emdna-V10-02-34 270 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat 271 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 272 displacement types can be thread shared
706 - G4TrackState: Move implementation of static 273 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 274 G4VTrackStateID::Create() to cc file - windows crash
708 275
709 15-11-2016, MK, tag emdna-V10-02-33 276 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 277 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 278
712 14-11-2016, MK, tag emdna-V10-02-32 279 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t 280 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 281 windows platforms
715 282
716 14-11-2016, MK, tag emdna-V10-02-31 283 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: 284 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 285 tag init constexpr factor with number rather than expression
719 286
720 14-11-2016, MK, tag emdna-V10-02-30 287 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 288 - Use CLHEP::pi instead of M_PI
722 289
723 14-11-2016, MK, tag emdna-V10-02-29 290 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 291 - Correct bracket enclosing
725 292
726 14-11-2016, MK, tag emdna-V10-02-28 293 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 294 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 295 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 296 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 297 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 298 - Adds and use G4CTCounter
732 299
733 02-11-2016, MK, tag emdna-V10-02-27 300 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom 301 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 302 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo 303 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety 304 computeStep & computeSafety
738 305
739 07-08-2016, SI, tag emdna-V10-02-26 306 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 307 - added stationnary mode to sub-excitation electron processes
741 308
742 23-06-2016, MK 309 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 310 - G4Scheduler: move G4IosFlagsSaver to Process()
744 311
745 3-06-2016, MK, tag emdna-V10-02-25 312 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 313 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 314 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 315 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 316
750 3-06-2016, MK, tag emdna-V10-02-24 317 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 318 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 319 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 320 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 321 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 322 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 323 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc 324 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 325 model used for another part than e-
759 326
760 1-06-2016, MK, tag emdna-V10-02-23 327 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 328 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 329 logic for interface with physics models
763 330
764 31-05-2016, MK, tag emdna-V10-02-22 331 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 332 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 333
767 28-05-2016, MK, tag emdna-V10-02-21 334 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 335 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 336 one of the previous tags
770 337
771 19-05-2016, MK, tag emdna-V10-02-20 338 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 339 - G4ITNavigator: remove warnings on gcc6.1
773 340
774 17-05-2016, MK, tag emdna-V10-02-19 341 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 342 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 343 correct model and process names for solvation
777 344
778 12-05-2016, MK, tag emdna-V10-02-18 345 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: 346 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 347 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne 348 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 349 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 350 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 351 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 352 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 353 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim 354 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 355 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 356 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 357 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 358 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 359 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 360 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 361 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 362 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 363 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 364 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 365 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 366 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 367 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 368 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 369 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv 370 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 371 created; otherwise, the primary electron is killed
805 372
806 30-04-2016, MK, tag emdna-V10-02-17 373 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 374 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 375
809 30-04-2016, MK, tag emdna-V10-02-16 376 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 377 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p 378 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 379 unregistered molecule definition
813 380
814 22-04-2016, MK, tag emdna-V10-02-15 381 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 382 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 383 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 384
818 22-04-2016, MK, tag emdna-V10-02-14 385 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit 386 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 387 remove usage of internal energy boundaries
821 388
822 19-03-2016, SI, tag emdna-V10-02-13 389 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 390 - added nrj extensibility to SR and USR models
824 391
825 11-03-2016, SI, tag emdna-V10-02-12 392 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 393 -roll back to files in emdna-V10-02-06
827 394
828 10-03-2016, SI, tag emdna-V10-02-11 395 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 396 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 397 and G4DNAScreenedRutherfordElasticModel
831 398
832 10-03-2016, SI, tag emdna-V10-02-10 399 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 400 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 401
835 07-03-2016, SI, tag emdna-V10-02-09 402 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 403 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 404 of G4DNAUeharaScreenedRutherfordElasticModel
838 405
839 06-03-2016, SI, tag emdna-V10-02-08 406 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 407 -removed useless G4Pow declaration
841 408
842 04-03-2016, SI, tag emdna-V10-02-07 409 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 410 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 411 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 412
846 02-03-2016, SI, tag emdna-V10-02-06 413 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 414 -replaced std::exp by G4Exp
848 415
849 02-03-2016, SI, tag emdna-V10-02-05 416 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 417 -replaced std::exp by G4Exp
851 418
852 02-03-2016, SI, tag emdna-V10-02-04 419 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 420 -replaced std::exp by G4Exp
854 421
855 01-03-2016, SI, tag emdna-V10-02-03 422 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 423 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 424 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 425 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 426 by S. Okada (KEK, JP)
860 427
861 17-02-2016, MK, tag emdna-V10-02-02 428 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 429 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 430
864 16-12-2015, SI, tag emdna-V10-02-01 431 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: 432 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 433 added protection on energy for interpolation method change
867 434
868 16-12-2015, SI, tag emdna-V10-02-00 435 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add 436 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 437 energy
871 438
872 13-11-2015, MK, tag emdna-V10-01-55 439 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 440 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 441 file
875 442
876 10-11-2015, MK, tag emdna-V10-01-54 443 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 444 * remove unused variables
878 445
879 10-11-2015, MK, tag emdna-V10-01-53 446 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 447 * Coverity fixes
881 448
882 06-11-2015, MK, tag emdna-V10-01-52 449 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 450 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 451
885 06-11-2015, MK, tag emdna-V10-01-51 452 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 453 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 454 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 455
889 06-11-2015, MK, tag emdna-V10-01-50 456 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 457 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 458 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 459 * Add G4ITStepProcessorState_Lock.hh
893 460
894 06-11-2015, MK, tag emdna-V10-01-49 461 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 462 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 463 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 464 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 465 but in the source file - causing crashes on windows
899 466
900 04-11-2015, MK, tag emdna-V10-01-48 467 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 468 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 469 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 470 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 471 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 472 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 473 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 474 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 475 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 476 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using 477 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 478 all dissociation products have been defined (they will just not be taken
912 into account) 479 into account)
913 * G4DNAMolecularReactionTable: delete reaction 480 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 481
915 03-11-2015, MK, tag emdna-V10-01-47 482 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 483 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac 484 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 485 the call
919 486
920 03-11-2015, MK, tag emdna-V10-01-46 487 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 488 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 489 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 490 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 491 (causing navigator complains)
925 492
926 03-11-2015, MK, tag emdna-V10-01-45 493 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 494 * G4Serialize: Add definition in header for G4String
928 495
929 02-11-2015, MK, tag emdna-V10-01-44 496 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 497 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 498 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 499 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 500 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon 501 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 502 -> G4MolecularConfMan is taking care of this
936 503
937 30-10-2015, MK, tag emdna-V10-01-43 504 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter 505 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 506 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 507 * Unit tests corrected
941 * G4VITDiscreteProcess added 508 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 509 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 510 * Intermediate update for 10.2 release
944 511
945 27-10-2015, MK, tag emdna-V10-01-42 512 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 513 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 514
948 26-10-2015, MK, tag emdna-V10-01-41 515 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 516 * Sanche model: try to solve std::vector out of bounds
950 517
951 23-10-2015, MK, tag emdna-V10-01-40 518 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 519 * remove all CLHEP::shared_ptr usage
953 520
954 23-10-2015, CV, SM, tag emdna-V10-01-39 521 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel 522 * Addded base class G4VDNAPTBModel
956 523
957 28-09-2015, SI, tag emdna-V10-01-38 524 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 525 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 526
960 19-09-2015, MK, tag emdna-V10-01-37 527 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 528 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 529 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 530
964 17-09-2015, MK, tag emdna-V10-01-36 531 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 532 * G4MoleculeGun: Remove compilation warnings
966 533
967 04-09-2015 MK, tag emdna-V10-01-35 534 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 535 * Fix G4MoleculeGun compilation errors
969 536
970 03-09-2015 SI, tag emdna-V10-01-34 537 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 538 * Added stationary regime to all inelastic models
972 539
973 19-08-2015, MK 540 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 541 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 542 - compatible with both Smoluchowski & Gillespie models
976 543
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 544 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 545 * Added easier handling of cumulative proba. in SR elastic models
979 546
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 547 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 548 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 549 declaration of G4MoleculeShoot.
983 550
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 551 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 552 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 553 declaration of G4MoleculeShootMessenger.
987 554
988 12-08-2015, MK, tag emdna-V10-01-29 555 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 556 * Add G4Serialize in the build tree temporarily
990 557
991 12-08-2015, MK, tag emdna-V10-01-28 558 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 559 * G4Serialize added
993 560
994 12-08-2015, MK 561 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 562 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 563
997 24-07-2015, MK 564 24-07-2015, MK
998 - G4MolecularReactionTable 565 - G4MolecularReactionTable
999 * Add get methods 566 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 567 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 568 * Molecule gun : place randomly in a box
1002 569
1003 15-07-2015, MK 570 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA 571 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 572 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 573 * processes & models initialisation again
1007 574
1008 15-07-2015, MK, tag emdna-V10-01-26 575 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 576 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 577 * add macro to prevent warnings in non-verbose mode
1011 578
1012 11-07-2015, MK, tag emdna-V10-01-25 579 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 580 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 581 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 582
1016 10-07-2015, MK, tag emdna-V10-01-24 583 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 584 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 585 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 586 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 587 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 588
1022 08-07-2015, MK, tag emdna-V10-01-23 589 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 590 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 591 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 592 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose 593 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 594 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 595 - G4MoleculeDefinition:
1029 ::SetFormatedName added 596 ::SetFormatedName added
1030 ::NewConfiguration methods added 597 ::NewConfiguration methods added
1031 ::NewConfiguration added 598 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 599 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 600 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 601 ::Finalize added
1035 - G4MolecularConfiguration: 602 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 603 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 604 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 605 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec 606 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula 607 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 608 than molecule models
1042 - G4Molecule add constructor where only G4Mol 609 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 610 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 611 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 612 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 613 - G4DNAElectronHoleRecombination added
1047 614
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 615 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c 616 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 617 fasterCode usage on shell selection.
1051 618
1052 26-06-2015, MK 619 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to 620 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 621 warning message description
1055 622
1056 16-06-205, MK 623 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 624 - Add G4Scheduler::GetGun()
1058 625
1059 16-06-2015, MK, tag emdna-V10-01-21 626 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 627 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 628 - G4DNAIonElasticModel: clean and fix double free
1062 629
1063 12-06-2015, MK, tag emdna-V10-01-20 630 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 631 - remove virtual keyword from G4IT::GetPosition()
1065 632
1066 04-06-2015, MK 633 04-06-2015, MK
1067 - just cosmetics 634 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 635 - remove virtual keyword from G4IT::operator[]
1069 636
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 637 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 638 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 639 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 640 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 641 - Fully qualify std::string elsewhere as needed to adjust
1075 642
1076 22-05-2015, John Allison, tag emdna-V10-01-18 643 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 644 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 645 "G4Threading::IsMasterThread()".
1079 646
1080 17-05-2015, MK, tag emdna-V10-01-17 647 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 648 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 649 - Correct sources.cmake
1083 - Born headears: includes both model versions 650 - Born headears: includes both model versions when proxy header is included
1084 651
1085 16-05-2015, MK, tag emdna-V10-01-16 652 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 653 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 654 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 655 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 656 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 657 - Add G4DNABornExcitationModel2 (temporary)
1091 658
1092 15-05-2015, MK, tag emdna-V10-01-15 659 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 660 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 661
1095 14-05-2015, MK, tag emdna-V10-01-14 662 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 663 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 664
1098 14-05-2015, MK, tag emdna-V10-01-13 665 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 666 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 667 - G4ITReaction: try to solve compilation error
1101 668
1102 12-05-2015, MK, tag emdna-V10-01-12 669 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 670 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 671
1105 12-05-2015, MK, tag emdna-V10-01-11 672 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 673 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 674
1108 11-05-2015, MK, tag emdna-V10-01-10 675 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 676 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 677 +Add GetPartialCrossSection
1111 +Code cleaning 678 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 679 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 680 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 681 - G4DNAChemistryManager::GetValue(...) added
1115 682
1116 02-05-2015, MK 683 02-05-2015, MK
1117 - Update G4TrackState & related classes 684 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: 685 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian 686 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 687 +comment useless method
1121 - G4Scheduler: 688 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS 689 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime 690 +remove fTmpEndTime
1124 +Add CanICarryOn 691 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 692 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 693
1127 18-03-2015, MK, tag emdna-V10-01-08 694 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 695 - Same as before, just add the missing History file
1129 696
1130 18-03-2015, MK, tag emdna-V10-01-07 697 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 698 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 699 instead of a reference
1133 700
1134 12-02-2015, MK, tag emdna-V10-01-06 701 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 702 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 703 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi 704 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 705
1139 11-02-2015, MK, tag emdna-V10-01-05 706 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 707 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 708 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 709 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 710
1144 16-01-2015, SI, tag emdna-V10-01-04 711 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 712 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 713
1147 14-12-2014, MK, tag emdna-V10-01-03 714 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 715 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval 716 - ScreenRutherfordElastic: correct retrieval of water density
1150 717
1151 13-12-2014, SI, tag emdna-V10-01-02 718 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 719 - Added elastic model by H. Tran.
1153 720
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 721 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 722 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 723 to allow for compilation on Linux/clang-3.5.
1157 724
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 725 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 726 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 727 include missing files:
1161 G4ITTransportationManager.icc 728 G4ITTransportationManager.icc
1162 G4KDNode.icc 729 G4KDNode.icc
1163 G4KDTree.icc 730 G4KDTree.icc
1164 G4MoleculeFinder.hh 731 G4MoleculeFinder.hh
1165 732
1166 01-12-2014, MK, tag emdna-V10-00-63 733 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 734 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 735 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 736 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 737 when the particle has reached a boundary
1171 738
1172 28-11-2014, MK, tag emdna-V10-00-62 739 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 740 - Retag
1174 741
1175 28-11-2014, MK, tag emdna-V10-00-61 742 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 743 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 744 - Fix Brownian navigation
1178 - Some fixes related to scheduler 745 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 746 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 747 - Enhance comments
1181 748
1182 24-11-2014, MK, tag emdna-V10-00-60 749 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 750 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 751
1185 24-11-2014, MK, tag emdna-V10-00-59 752 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 753 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 754 - Remove useless verbose
1188 - Try to compile on all platforms 755 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 756 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 757 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 758 Just registering constructor is enough to initialized the chemistry
1192 759
1193 24-11-2014, MK, tag emdna-V10-00-58 760 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 761 - G4FastList: remove all friend declarations
1195 762
1196 22-11-2014, MK, tag emdna-V10-00-57 763 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 764 - Another attempt to compile G4FastList on all platforms
1198 765
1199 22-11-2014, MK, tag emdna-V10-00-56 766 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 767 - Attempt to compile G4FastList on all platforms
1201 768
1202 21-11-2014, MK, tag emdna-V10-00-55 769 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 770 - Attempt to compile G4FastList with clang
1204 771
1205 21-11-2014, MK, tag emdna-V10-00-54 772 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 773 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou 774 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 775 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 776 - Update G4ITNavigator2 to the G4Navigator of John
1210 777
1211 21-11-2014, MK, tag emdna-V10-00-53 778 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b 779 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 780 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 781 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time 782 is false by default --> uses the random time computation for crossing
1216 boundaries 783 boundaries
1217 784
1218 20-11-2014, SI, tag emdna-V10-00-52 785 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 786 - Improved error message for missing data in PW elastic model
1220 787
1221 08-11-2014, MK, tag emdna-V10-00-51 788 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 789 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 790 when the asked item is not found
1224 791
1225 03-11-2014 MK, tag emdna-V10-00-50 792 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 793 - correct track creation by G4MoleculeGunMessenger
1227 794
1228 03-11-2014 MK, tag emdna-V10-00-49 795 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 796 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 797 - Correct a bug in G4MoleculeGun
1231 798
1232 28-10-2014 PA, tag emdna-V10-00-48 799 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 800 - correct compilation warnings
1234 801
1235 28-10-2014 PA, tag emdna-V10-00-47 802 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 803 - correct compilation warnings
1237 804
1238 28-10-2014 PA, tag emdna-V10-00-46 805 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 806 - correction in sources.cmake
1240 807
1241 28-10-2014 PA, tag emdna-V10-00-45 808 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 809 - retag to add LEPTS
1243 810
1244 28-10-2014 PA, tag emdna-V10-00-44 811 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 812 - add LEPTS
1246 813
1247 25-10-2014 MK, tag emdna-V10-00-43 814 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 815 - remove useless G4VITScheduler
1249 816
1250 25-10-2014 MK, tag emdna-V10-00-42 817 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 818 - correct warnings
1252 819
1253 24-10-2014 MK, tag emdna-V10-00-41 820 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 821 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 822 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 823 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 824 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 825 - G4ITFinder added
1259 - G4VITTrackHolder added 826 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 827 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 828 - code cleaned + useless classes removed
1262 829
1263 24-10-2014 MK, tag emdna-V10-00-40 830 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 831 - G4ITStepManager: remove verbose at closure time
1265 832
1266 21-10-2014 MK, tag emdna-V10-00-39 833 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 834 - try to solve crash at closure time
1268 835
1269 21-10-2014 MK, tag emdna-V10-00-38 836 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 837 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 838 table when deleted
1272 - update disclaimer 839 - update disclaimer
1273 840
1274 17-10-2014 MK, tag emdna-V10-00-37 841 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 842 - clean code
1276 - G4ITStepManager: one can ask why simulation 843 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 844 - remove useless verbose
1278 845
1279 17-10-2014 MK, tag emdna-V10-00-36 846 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 847 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 848 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 849 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 850
1284 10-10-2014 MK, tag emdna-V10-00-35 851 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 852 Avoid use of std::map at the application level in TimeStepAction
1286 853
1287 07-10-2014 MK, tag emdna-V10-00-34 854 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 855 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 856 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 857 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 858
1292 07-10-2014 MK, tag emdna-V10-00-33 859 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 860 Initialize G4ITStepManager in G4DNAChemistryManager
1294 861
1295 17-09-2014 MK, tag emdna-V10-00-32 862 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 863 Add G4ITStepManager + messenger
1297 Tag before architecture change 864 Tag before architecture change
1298 865
1299 12-07-2014 SI, tag emdna-V10-00-31 866 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 867 Removed obsolete class for electron excitation
1301 868
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 869 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 870 - Get rid of obsolete 'register' keyword in code.
1304 871
1305 05-06-2014 SI, tag emdna-V10-00-29 872 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 873 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D 874 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 875 G4GenericIon usage
1309 - requires G4EMLOW6.39 876 - requires G4EMLOW6.39
1310 877
1311 04-06-2014 MK, tag emdna-V10-00-28 878 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 879 Remove directory management/include/impl
1313 Prepare for release 880 Prepare for release
1314 881
1315 04-06-2014 MK, tag emdna-V10-00-27 882 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 883 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 884 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 885 Avoid usage of molecule iterators as pointers
1319 886
1320 03-06-2014 SI, tag emdna-V10-00-26 887 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 888 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 889
1323 28-05-2014 VI, SI tag emdna-V10-00-25 890 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 891 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 892 Ionisation models switch to use angular generator
1326 interface 893 interface
1327 894
1328 12.05.2014 MK, tag emdna-V10-00-24 895 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 896 Try to remove warnings 4
1330 897
1331 12.05.2014 MK, tag emdna-V10-00-23 898 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 899 Try to remove warnings 3
1333 900
1334 12.05.2014 MK, tag emdna-V10-00-22 901 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 902 Try to remove warnings 2
1336 903
1337 12.05.2014 MK, tag emdna-V10-00-21 904 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 905 Try to remove warnings
1339 906
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 907 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx 908 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 909 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 910 G4EMLOW6.38 needed
1344 911
1345 07-04-2014 SI tag emdna-V10-00-19 912 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 913 Changed faster method interpolation in
1347 G4DNABornIonisationModel 914 G4DNABornIonisationModel
1348 915
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 916 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 917 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 918 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 919 Corrected order of inclusion of some headers and use of <>/"".
1353 920
1354 04-04-2014 MK tag emdna-V10-00-17 921 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 922 Try to solve warnings when G4VERBOSE is off
1356 923
1357 02-04-2014 MK tag emdna-V10 924 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 925 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 926
1360 02-04-2014 MK tag emdna-V10 927 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 928 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 929
1363 02-04-2014 MK tag emdna-V10 930 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 931 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 932 -> this part is withdrawn for now
1366 933
1367 02-04-2014 MK tag emdna-V10 934 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 935 - version 2 : try fixing the build error on mac
1369 936
1370 02-04-2014 MK tag emdna-V10 937 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 938 - version 1 : try to fix build errors and warnings on mac
1372 939
1373 02-04-2014 MK tag emdna-V10 940 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 941 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 942 (G4MemStat & G4MolecularConfiguration)
1376 943
1377 02-04-2014 MK tag emdna-V10 944 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 945 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 946 (problem coming from having as a friend class a template argument)
1380 947
1381 02-04-2014 MK tag emdna-V10 948 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla 949 - try to fix build error on windows platform
1383 950
1384 01-04-2014 MK tag emdna-V10 951 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 952 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 953 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 954
1388 01-04-2014 MK tag emdna-V10 955 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 956 - reset CMakeLists.txt
1390 957
1391 01-04-2014 MK tag emdna-V10 958 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 959 - update chemistry
1393 960
1394 01-04-2014 SI tag emdna-V10-00-05 961 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 962 - Modified calculation of secondary kinetic for fast code
1396 963
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 964 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 965 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 966 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 967 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 968
1402 25-03-2014 VS, SI tag emdna-V10-00-03 969 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 970 - Added several clear() to vectors for MT
1404 971
1405 17-03-2014 SI tag emdna-V10-00-02 972 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc 973 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 974 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 975 to be used with G4EMLOW6.36
1409 976
1410 12-12-2013 M.K tag emdna-V10-00-01 977 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 978 - G4DNAMolecularMaterial: Remove unused variable
1412 979
1413 12-12-2013 M.K tag emdna-V10-00-00 980 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to 981 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 982 a model is not created at initialisation time
1416 983
1417 21-11-2013 V.I. tag emdna-V09-06-22 984 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 985 - G4ITStepProcessor2 - removed obsolete unused header
1419 986
1420 01-11-2013 M.K tag emdna-V09-06-21 987 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 988 - Correct incorrect singleton check introduced in previous tag
1422 989
1423 01-11-2013 M.K tag emdna-V09-06-20 990 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 991 - Prepare for release bis
1425 992
1426 01-11-2013 M.K tag emdna-V09-06-19 993 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 994 - Prepare for release
1428 995
1429 10-10-2013 M.K. tag emdna-V09-06-18 996 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 997 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 998
1432 06-10-2013 M.K. tag emdna-V09-06-17 999 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 1000 - Same as before once again
1434 1001
1435 03-10-2013 M.K. tag emdna-V09-06-16 1002 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 1003 - Same as before
1437 1004
1438 03-10-2013 M.K. tag emdna-V09-06-15 1005 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 1006 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t 1007 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 1008 by the user - stage 1
1442 1009
1443 14-09-2013 M.Asai tag emdna-V09-06-14 1010 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 1011 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 1012 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 1013 with virtual keyword in G4VITProcess.
1447 1014
1448 12-09-2013 M.K. tag emdna-V09-06-13 1015 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 1016 Correction of an inadvertent modification introduced in previous tag
1450 1017
1451 12-09-2013 M.K. tag emdna-V09-06-12 1018 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 1019 Correct bound checks in G4ITManager.icc
1453 1020
1454 16-08-2013 S.I. tag emdna-V09-06-11 1021 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 1022 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 1023
1457 16-08-2013 S.I. tag emdna-V09-06-10 1024 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 1025 Added G4DNAIons
1459 1026
1460 25-06-2013 M.K. tag emdna-V09-06-09 1027 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 1028 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet 1029 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 1030 auto_ptr according to c++ std version
1464 1031
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 1032 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 1033 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 1034 for problem accidentally introduced in previous tag.
1468 1035
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 1036 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 1037 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 1038 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 1039 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 1040 compilation on Windows.
1474 1041
1475 06-06-2013 S.I. tag emdna-V09-06- 1042 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 1043 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 1044 Requires G4EMLOW version 6.33
1478 1045
1479 25-05-2013 M.K. tag emdna-V09-06- 1046 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 1047 *Fix warning compilation in G4KDMap for specific gcc version
1481 1048
1482 24-05-2013 M.K. tag emdna-V09-06- 1049 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi 1050 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 1051 but still not in usage
1485 1052
1486 23-05-2013 M.K. tag emdna-V09-06- 1053 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 1054 * G4KDMap : try fix error on std:ceil call on windows
1488 1055
1489 23-V09-06-03-05-2013 M.K. tag emd 1056 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 1057 * G4KDMap : used deque::iterator
1491 1058
1492 1059
1493 22-05-2013 M.K. tag emdna-V09-06- 1060 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 1061 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 1062 * G4KDMap : pop out elements from map
1496 1063
1497 22-05-2013 M.K. tag emdna-V09-06-00 1064 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global 1065 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager 1066 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 1067 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 1068 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 1069 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 1070 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali 1071 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes 1072 initialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI 1073 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 1074
1508 12-11-2012 M.K tag emdna-V09-05- 1075 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 1076 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 1077 coverity warnings (rev 64993)
1511 1078
1512 06-11-2012 G.Cosmo tag emdna-V09 1079 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 1080 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 1081 for objects in maps...
1515 1082
1516 04-11-2012 M.K. tag emdna-V09-05-33 1083 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 1084 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 1085 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 1086 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 1087 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 1088 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 1089 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 1090 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 1091 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 1092 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 1093 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 1094 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 1095 add "else" before "if" statements and
1529 add variables to avoid ma 1096 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 1097 dna.files : update files (rev 64725)
1531 1098
1532 03-11-2012 S.I. tag emdna-V09-05-32 1099 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 1100 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 1101 classes
1535 1102
1536 24-10-2012 M.K tag emdna-V09 1103 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 1104 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 1105 (previously commented)
1539 1106
1540 23-10-2012 M.K tag emdna-V09 1107 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 1108 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 1109 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 1110
1544 18-10-2012 M.K tag emdna-V09 1111 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 1112 Previous tag did not include history changes
1546 1113
1547 18-10-2012 M.K tag emdna-V09 1114 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 1115 Remove warning
1549 1116
1550 17-10-2012 M.K tag emdna-V09 1117 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 1118 Correct a typo from previous tag
1552 1119
1553 17-10-2012 M.K tag emdna-V09 1120 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 1121 Correct information in headers
1555 Rename G4DNADiffustionControlledM 1122 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 1123 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 1124
1558 01-10-2012 SI, P.Pater tag emdna-V09 1125 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 1126 Force kinetic energy to zero for real killings in models.
1560 1127
1561 12-07-2012 G.Cosmo tag emdna-V09 1128 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 1129 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 1130 constants, in plan to remove implicit inclusion from globals.hh.
1564 1131
1565 11.07.2012 M.K tag emdna-V09 1132 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 1133 Correct warnings introduce in previous tag
1567 1134
1568 11.07.2012 M.K tag emdna-V09 1135 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 1136 Tag to be proposed
1570 1137
1571 25.06.2012 M.K tag emdna-V09-05-21 1138 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 1139 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 1140 Modify molecule's name
1574 1141
1575 21.06.2012 S.I tag emdna-V09-05-20 1142 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte 1143 Update of electron elastic scattering low limit
1577 1144
1578 09.06.2012 M.K tag emdna-V09-05-19 1145 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 1146 Fixed shadowing
1580 1147
1581 04.06.2012 M.K tag emdna-V09-05-18 1148 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 1149 Add G4ITTrackingInteractivity + correct coverity warnings
1583 1150
1584 24.05.2012 M.K tag emdna-V09-05-17 1151 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 1152 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 1153
1587 23.05.2012 M.K tag emdna-V09-05-16 1154 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 1155 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 1156 G4ITStepManager
1590 Prevent call of destructor of G4I 1157 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 1158 G4DNAChemistryManager
1592 1159
1593 23.05.2012 M.K tag emdna-V09-05-15 1160 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 1161 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 1162 when one of its methods is called using a material that is
1596 not defined as a molecule 1163 not defined as a molecule
1597 1164
1598 21.05.2012 M.K tag emdna-V09-05-14 1165 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 1166 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 1167 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 1168 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 1169 Modify all models to use G4DNAMolecularMaterial
1603 1170
1604 14.05.2012 M.K tag emdna-V09-05-13 1171 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 1172 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 1173 Add G4DNADamages
1607 1174
1608 10.05.2012 M.K tag emdna-V09-05-12 1175 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 1176 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 1177 from UserReactionAction::EndProcessing()
1611 1178
1612 08.05.2012 M.K tag emdna-V09-05-11 1179 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 1180 Use inverseErf from CLHEP
1614 1181
1615 03.05.2012 M.K tag emdna-V09-05-10 1182 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 1183 Add erfc function for windows compilator (VC++)
1617 1184
1618 03.05.2012 M.K tag emdna-V09-05-09 1185 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 1186 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 1187
1621 03.05.2012 M.K tag emdna-V09-05-08 1188 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 1189 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 1190 Add new methods in G4ChemistryManager :
1624 - PushMolecule 1191 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 1192 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 1193 Reset() at the end of G4ITStepManager::Process()
1627 1194
1628 30.03.2012 M.K tag emdna-V09-05-07 1195 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 1196 Same as emdna-V09-05-06
1630 1197
1631 30.03.2012 M.K tag emdna-V09-05-06 1198 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 1199 1) Add separate navigator for synchronous tracking
1633 New classes : 1200 New classes :
1634 * G4ITTransportationManager 1201 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 1202 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 1203 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 1204 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 1205 3) Solve bugs with normal and brownian ITTransportation
1639 1206
1640 14.03.2012 M.K tag emdna-V09-05-05 1207 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 1208 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 1209 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 1210 -> become size_t + related changes
1644 * when a poststep process propo 1211 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 1212 => considered as a time, and transportation::computestep
1646 is used 1213 is used
1647 1214
1648 14.03.2012 M.K tag emdna-V09-05-04 1215 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 1216 Fix compilation warning
1650 1217
1651 14.03.2012 M.K tag emdna-V09-05-03 1218 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 1219 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 1220 Fix coverity warnings
1654 1221
1655 18.01.2012 S.I. tag emdna-V09 1222 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 1223 Removal of G4Water* classes in utils
1657 1224
1658 11.01.2012 M.K tag emdna-V09 1225 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 1226 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 1227 concerning the final position of the solvated electron
1661 using Sanche thermalization 1228 using Sanche thermalization
1662 1229
1663 16.12.2011 S.I tag emdna-V09 1230 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 1231 Updated source of cross section file for elastic scattering
1665 1232
1666 25.11.2011 M.K tag emdna-V09 1233 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 1234 Correct a typo in previous tag
1668 1235
1669 25.11.2011 M.K tag emdna-V09 1236 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 1237 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 1238 rather than center of mass in DNAMolecularReaction
1672 1239
1673 21.11.2011 M.K tag emdna-V09 1240 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 1241 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 1242 avoid conflicts with ROOT.
1676 Add short class description (comm 1243 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 1244 in JavaDoc style for doxygen use.
1678 1245
1679 21.11.2011 M.K tag emdna-V09 1246 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1247 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1248 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1249 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1250 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1251 when the time steps returned by the time stepper
1685 and the processes are equal 1252 and the processes are equal
1686 Improve verbose 1253 Improve verbose
1687 1254
1688 21.11.2011 M.K tag emdna-V09 1255 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1256 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1257 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1258 Correct verbose in new models & process
1692 1259
1693 18.11.2011 M.K tag emdna-V09 1260 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl 1261 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1262 in G4DNAChemistryManager
1696 1263
1697 18.11.2011 M.K tag emdna-V09 1264 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1265 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1266 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1267 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1268
1702 15.11.2011 G.Cosmo tag emdna-V09 1269 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1270 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1271 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1272 Windows.
1706 Fixed compilation warning on icc 1273 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1274 G4MolecularDecayTable.cc
1708 1275
1709 10.11.2011 M.K. tag emdna-V09 1276 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1277 Fix a bug in G4DNATransformElectronModel
1711 1278
1712 10.11.2011 M.K. tag emdna-V09 1279 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1280 Clean classes for release
1714 Add comment into source 1281 Add comment into source
1715 Change name of some methods 1282 Change name of some methods
1716 Transform two independent singlet 1283 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1284 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1285 (ITStepMan + DNAChemMan)
1719 1286
1720 10.11.2011 M.K. tag emdna-V09 1287 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1288 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1289 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1290 the chemistryManager.
1724 1291
1725 09.11.2011 M.K. tag emdna-V09 1292 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1293 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1294 in G4TrackListNode.
1728 Simplify and improve the use of d 1295 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1296 Add more convenient methods in userReactionAction
1730 1297
1731 08.11.2011 M.K. tag emdna-V09 1298 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1299 Fix coverity warnings
1733 1300
1734 07.11.2011 M.K. tag emdna-V09 1301 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1302 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1303 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1304 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1305 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1306 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1307 Clean classes for release
1741 1308
1742 03.11.2011 M.K. tag emdna-V09 1309 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1310 Add dna libs in sources.cmake
1744 1311
1745 03.11.2011 M.K. tag emdna-V09 1312 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1313 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1314 Add dna includes in sources.cmake
1748 1315
1749 01.11.2011 M.K. tag emdna-V09 1316 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1317 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1318 G4ITTransportation, G4TrackList on Windows
1752 1319
1753 01.11.2011 G.Cosmo 1320 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1321 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1322 updated GNUMakefiles to have it properly defined.
1756 1323
1757 31.10.2011 M.K tag emdna-V09-04-35 1324 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1325 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1326 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives 1327 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1328 Fix windows compilation errors & warnings
1762 1329
1763 28.10.2011 M.K tag emdna-V09-04-34 1330 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1331 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1332 Plus remove obsolete G4Exception
1766 1333
1767 28.10.2011 M.K tag emdna-V09-04-33 1334 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1335 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1336 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1337 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1338 to models
1772 1339
1773 27.10.2011 M.K tag emdna-V09-04-32 1340 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1341 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1342 coverity errors.
1776 1343
1777 26.10.2011 M.K tag emdna-V09-04-31 1344 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared 1345 change std::shared_ptr to CLHEP::shared_ptr
1779 1346
1780 26.10.2011 M.K. tag emdna-V09-04-30 1347 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1348 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1349 G4MolecularConfiguration::fManager added
1783 1350
1784 26.10.2011 M.K. tag emdna-V09-04-29 1351 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1352 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1353 Add electron solvatation process & models
1787 Add chemical processes 1354 Add chemical processes
1788 1355
1789 21.10.2011 M.K. tag emdna-V09-04-28 1356 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model 1357 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1358 emdna-V09-04-24
1792 1359
1793 21.10.2011 M.K. tag emdna-V09-04-27 1360 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1361 CMake fixes from emdna-V09-04-24
1795 1362
1796 21.10.2011 M.K. tag emdna-V09-04-26 1363 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous 1364 Bug fixes and new dev from the previous tag
1798 1365
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1366 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1367 Extension of ionisation by HZE proposed by Z. Francis
1801 1368
1802 20.10.2011 M.K. tag emdna-V09-04-24 1369 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1370 Bug fixes and new dev from the previous tag
1804 1371
1805 07.10.2011 M.K. tag emdna-V09-04-23 1372 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files 1373 First tag with "molecules" files
1807 1374
1808 07.10.2011 M.K. tag emdna-V09-04-22 1375 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1376 Add molecules+management directory
1810 First tag with "management" files 1377 First tag with "management" files
1811 1378
1812 09.09.2011 G.Folger tag emdna-V09 1379 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer 1380 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc 1381 G4DNAMoleculeManager.cc
1815 1382
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1383 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1384 Updated sources.make and CMakeLists.txt
1818 1385
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1386 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1387 Reorganized whole architecture.
1821 1388
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1389 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1390 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1391 if no deexcitation)
1825 1392
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1393 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1394 Changed code (em0006) numbering for G4Exception
1828 1395
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1396 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1397 Switched to new G4Exception syntax
1831 1398
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1399 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1400 Added enhanced debug information in ionisation models
1834 1401
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1402 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1403 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1404
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1405 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1406 Removed obsolete information.
1840 1407
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1408 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1409 Updated deexcitation initialization in ionization models.
1843 1410
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1411 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1412 Coverity warnings removal
1846 1413
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1414 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1415 - Increased energy limits for
1849 G4DNAChargeIncrease 1416 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1417 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1418 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1419 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1420 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade 1421 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1422 of ionisation classes for Auger e-
1856 1423
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1424 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1425 Further compilation warnings removal
1859 1426
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1427 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1428 Compilation warnings removal
1862 1429
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1430 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1431 added Atomic Deexcitation to Ionisation Models
1865 1432
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1433 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1434 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1435 G4DNADingfelderChargeIncreaseModel.cc.
1869 1436
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1437 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1438 Changed process sub-type numbering.
1872 1439
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1440 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1441 Fixed coverity warnings.
1875 1442
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1443 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1444 Updated all models for handling of variable density.
1878 1445
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1446 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1447 Addition of dependencies to configuration files.
1881 1448
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1449 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1450 Addition of all files.
1884 1451
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1452 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1453 Creation of dna sub-package in electromagnetic category.