| Geant4 Cross Reference |
1 # Category emdna History << 1 =========================================================
2 << 2 Geant4 - an Object-Oriented Toolkit for Simulation in HEP
3 See `CONTRIBUTING.rst` for details of **requir << 3 =========================================================
4 which **must** added in reverse chronological << 4
5 It must **not** be used as a substitute for wr << 5 Category History file
6 << 6 ---------------------
7 ---------------------------------------------- << 7 This file should be used by G4 developers and category coordinators
8 << 8 to briefly summarize all major modifications introduced in the code
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) << 9 and keep track of all category-tags.
10 - missing value in DNA PTB Ionization Structur << 10 It DOES NOT substitute the CVS log-message one should put at every
11 - missing GetMaterial() in DNA PTB Excitation << 11 committal in the CVS repository !
12 << 12
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) << 13 ----------------------------------------------------------
14 - Modified the molecule names of OH, HO2, O in << 14 * Reverse chronological order (last date on top), please *
15 Each molecule configuration has a molecule d << 15 ----------------------------------------------------------*
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with <<
35 of std::function in G4OctreeFinder. <<
36 <<
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) <<
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with <<
51 Added missing declarations for TG4MoleculeSh <<
52 Based on [GitHub PR#69](https://github.com/G <<
53 <<
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) <<
106 - Use G4FindDataDir to access data libraries i <<
107 <<
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) <<
109 - correct fastercode section for dna opt6 <<
110 <<
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) <<
112 - correct scavenger counter for oxygen <<
113 <<
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) <<
115 - Fixed the K shell bug in G4DNARuddIonisation <<
116 <<
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) <<
118 - improved equilibrium processes, introduced G <<
119 <<
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) <<
121 - In navigation classes, removed references to <<
122 which is now deprecated. <<
123 <<
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) <<
125 - Removed references to unused G4GRSSolid and <<
126 <<
127 ## 2023-08-29 (emdna-V11-01-18) <<
128 - Fix minor/obvious Coverity issues <<
129 <<
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) <<
131 - Apply core clang-tidy fixes plus those for <<
132 - Cons/destructor modernization <<
133 - Readability and logic for conditionals/boo <<
134 <<
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) <<
136 - Apply patch from [GitHub PR 58](https://gith <<
137 - Use std::erfc to avoid precision loss <<
138 - Remove unused header <<
139 <<
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) <<
141 - minor correction for DNA material in option6 <<
142 <<
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) <<
144 - use analytical method for DNA material in op <<
145 <<
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 <<
147 - G4DNARuddIonisationExtendedModel - model re- <<
148 threads, applicable for scaled energy interv <<
149 an ion data is not available proton x-sectio <<
150 used, sampling of delta-electron is done usi <<
151 <<
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) <<
153 - Modified DNA cross section file name to new <<
154 <<
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) <<
156 - Add DNA cross section to dna_option6 <<
157 <<
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) <<
159 - Fix Compilation warnings on XCode <<
160 <<
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) <<
162 - correct the initial values of G4DNAEventSche <<
163 <<
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) <<
165 - add time structure (pulsed beam) to water ra <<
166 <<
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) <<
168 - correct KDTree bug <<
169 <<
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) <<
171 - icsd physicslist: deleted unused model, <<
172 - Apdated RegisterModel function with new stru <<
173 - added model data to G4DNAMaterialManager sin <<
174 <<
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) <<
176 - Fixed compilation warning on macOS/XCode for <<
177 in G4DNAVacuumModel::Initialise(). <<
178 <<
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) <<
180 - Introduced G4DNAMaterialManager to manage av <<
181 and keeps DNA cross section data in one thread <<
182 - minor change in G4VDNAModel <<
183 <<
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) <<
185 - reorganize multiple material model of PTB mo <<
186 G4VDNAModel plays like a data layer for multip <<
187 The concrete models are independent of G4DNAMo <<
188 <<
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) <<
190 - replaced string to material index and clean <<
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, <<
192 G4DNAPTBExcitationStructure) - PTB models <<
193 - added material pointer members for each conc <<
194 - removed unused objects (G4DataVector()) <<
195 <<
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) <<
197 - clean G4DNAModelInterface file for the model <<
198 <<
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) <<
200 - fix coverity of G4DNARuddIonisationExtendedM <<
201 (Uninitialized scalar variable) from cand1 ana <<
202 <<
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 <<
204 - G4DNARuddIonisationExtendedModel - fixed com <<
205 radioactive decay module - before this upd <<
206 only 5 ions have data needed for this mode <<
207 model scaling relation to the carbon ion i <<
208 no data; low-energy limit is used now more <<
209 but not killed, because they may have radi <<
210 lines are removed from the class <<
211 <<
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) <<
213 - Fixed more compilation warnings for implicit <<
214 <<
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) <<
216 - delete unused tests in dna (G4DNAProcessTest <<
217 <<
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) <<
219 - Fixed compilation warnings for implicit type <<
220 <<
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 <<
222 - G4DNAUeharaScreenedRutherfordElasticModel - <<
223 low and high energy limit for the model; r <<
224 <<
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) <<
226 - Fix Coverity issues for ref-09 <<
227 <<
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) <<
229 - minor correction of IRT-syn model (chemistry <<
230 after 1 ps. <<
231 <<
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- <<
233 - Add nitrogen models from PTra code <<
234 <<
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) <<
236 - Fixed minor mistake of file name in G4DNARPW <<
237 - Added protection for HighEnergyLimit/LowEner <<
238 G4DNARPWBAExcitationModel <<
239 <<
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) <<
241 - Fixed compilation warnings on Intel/icx comp <<
242 but not used in G4ITNavigator2. <<
243 <<
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) <<
245 - Fix user's report for IRT model. <<
246 If the first IRTSampling won't give any rea <<
247 <<
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) <<
249 - Fix Coverity static analysis for ref-08 <<
250 uninit_member in G4DNAMillerGreenExcitationMo <<
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI <<
252 Use auto & instead of auto : G4ITFinder, G4DN <<
253 <<
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) <<
255 - Resolve dependency inconsistencies : <<
256 dna/management/include/G4ChemicalMoleculeF <<
257 dna/management/include/G4UserMeshAction.hh <<
258 dna/management/include/G4OctreeFinder.hh i <<
259 <<
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) <<
261 - Partially resolve dependency inconsistencies <<
262 - NB: cannot be resolved fully without intro <<
263 G4emdna-man, G4emdna-molman, G4emdna-utils <<
264 <<
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) <<
266 - Define G4CT_MAX_COUNT for changing "compile <<
267 errors on NVHPC compiler. <<
268 <<
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 <<
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo <<
271 cleanup according to the recent G4VEmProce <<
272 headers are moved to source; C++11 keyward <<
273 <<
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) <<
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela <<
276 G4DNACPA100IonisationModel.cc, G4DNAChampion <<
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo <<
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx <<
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis <<
280 G4DNASancheExcitationModel.cc : <<
281 use G4FindDataDir("G4LEDATA") to find datase <<
282 <<
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) <<
284 - correct DNA ion definitions in G4DNARuddIoni <<
285 <<
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) <<
287 - G4Octree : fixed Coverity warning. <<
288 <<
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) <<
290 - update data structure to improve performance <<
291 <<
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) <<
293 - G4ITTransportation: fixed misuse of bitwise <<
294 <<
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) <<
296 - Added missing headers. <<
297 <<
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) <<
299 - change the scavenging filter of the IRT beyo <<
300 <<
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) <<
302 - Add localthread for fUse of G4VMoleculeCount <<
303 <<
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa <<
305 - Incorporation of model based on RPWBA to tra <<
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI <<
307 <<
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) <<
309 - add UserBrownianAction in G4DNABrownianTrans <<
310 G4DNAMolecularDissociation <<
311 - replace G4int by int64_t for width integer t <<
312 - add fResetScavenger in G4SchedulerMessenger <<
313 <<
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) <<
315 - save local instances for recurrent access to <<
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo <<
317 G4DNARuddIonisationModel <<
318 - use G4Pow and G4Log instead of std::pow and <<
319 - inside G4DNARuddIonisationExtendedModel comm <<
320 inside G4DNAGenericIonsManager <<
321 <<
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) <<
323 - Debug the report #2235 which might be relate <<
324 - Clean code <<
325 - Delete G4ITFinder.cc <<
326 <<
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) <<
328 - save local instances for recurrent access to <<
329 G4DNADingfelderChargeDecreaseModel and G4DNADi <<
330 - use G4Pow and G4Log instead of std::pow and <<
331 <<
332 ## 2022-03-18 SI (emdna-V11-00-10) <<
333 - add protection in G4DNACPA100IonisationModel <<
334 <<
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) <<
336 - remove macro commands to control the chemist <<
337 (creating models in G4SchedulerMessenger can m <<
338 - add flag OctreeFinder in IRT_syn's Initializ <<
339 <<
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) <<
341 - add macro commands to control the chemistry <<
342 parameters including the chemical molecules an <<
343 <<
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) <<
345 - optimize IRT-syn model, use reaction radius <<
346 - delete G4VReactionType, G4DNAReactionTypeMan <<
347 G4DNAPartiallyDiffusionControlled <<
348 - delete G4DNAIRT_geomtries <<
349 <<
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) <<
351 - `G4ITTransportation`: Make `PrepareState` mo <<
352 - `G4DNAPolyNucleotideReactionProcess`: <<
353 - Move `PrepareState` and `State` macros int <<
354 - Make `PrepareState` more function-like, ex <<
355 - Move variable `pMoleculeA` under `G4VERBOS <<
356 <<
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) <<
358 - add the condition of water material for the <<
359 warning in G4DNAMolecularDissociation::DecayIt <<
360 <<
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) <<
362 - modify the macro in G4Molecule.cc and G4ITTy <<
363 <<
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) <<
365 - Prefer pointer to `const G4Material` if poss <<
366 <<
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) <<
368 - Remove useless `const_cast` of `G4VSensitive <<
369 <<
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) <<
371 - add G4DNAPolyNucleotideReactionProcess, G4VD <<
372 files for DNA damage applications <<
373 <<
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) <<
375 - Change to new Markdown History format <<
376 <<
377 --- <<
378 <<
379 # History entries prior to 11.0 <<
380 <<
381 8-11-2021, H. Tran, emdna-V10-07-15 <<
382 - corrected Circular dependencies for mesoscop <<
383 - corrected the problem in IRT <<
384 <<
385 4-11-2021, H. Tran, emdna-V10-07-14 <<
386 - define a G4FakeParticleID::fLastValue in the <<
387 delete G4FakeParticleID.cc, <<
388 solve arithmetic problems, <<
389 Added new mesoscopic model for dna chemistry <<
390 <<
391 21-10-2021, W.G.Shin, emdna-V10-07-13 <<
392 - Added a virtual classes for DNA geometry - G <<
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul <<
394 G4ITModelProcessor, G4Sch <<
395 G4DNAMolecularReactionTab <<
396 <<
397 23-09-2021, A. Ribon, emdna-V10-07-12 <<
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit <<
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh <<
400 G4DNAChargeIncrease, G4DNAElectronSolvation, <<
401 G4DNASecondOrderReaction, G4DNAElectronHoleR <<
402 G4DNABrownianTransportation : replaced hardw <<
403 with enum values introduced in the new class <<
404 <<
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 <<
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati <<
407 G4VLEPSModel - updated interfaces to G4Physi <<
408 <<
409 16-07-2021, D. Sakata, emdna-V10-07-10 <<
410 - Fixed initialization error in G4DNAELSEPAEla <<
411 <<
412 28-06-2021, G. Cosmo, emdna-V10-07-09 <<
413 - Fixed compilation error in G4ITMultiNavigato <<
414 enabled. <<
415 <<
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 <<
417 - Added new classes G4DNADiracRMatrixExcitatio <<
418 G4DNAQuinnPlasmonExcitatio <<
419 G4DNARelativisticIonisatio <<
420 G4DNAPlasmonExcitation <<
421 - Modified G4DNAELSEPAElasticModel for gold <<
422 <<
423 9-05-2021, H.Tran, tag emdna-V10-07-07 <<
424 - Add IRT-syn model <<
425 <<
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 <<
427 - Migrate build to modular CMake API <<
428 <<
429 27-04-2021, H.Tran, tag emdna-V10-07-05 <<
430 - G4DNAElectronHoleRecombination: added Octree <<
431 - G4DNABrownianTransportation: modified AlongS <<
432 - added OctreeFinder and IRTUtils <<
433 <<
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 <<
435 - G4DNABornAngle, G4DNARuddAngle - updated pri <<
436 <<
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 <<
438 - Move DNA-related Unit Tests from lowenergy/t <<
439 <<
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 <<
441 - Fixed dependency on g4tools, now moved to ex <<
442 <<
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 <<
444 - G4DNAElectronHoleRecombination <<
445 Dissociation channel of electron-hole recomb <<
446 G4EmDNAChemistry, _option1, _option2, _optio <<
447 - G4DNAWaterDissociationDisplacer <<
448 Added the fragment displacement for new diss <<
449 <<
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 <<
451 - Fix thread contention on mutable data in G4D <<
452 help resolving observed crashes in MT runs. <<
453 Some code cleanup. <<
454 <<
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 <<
456 - G4DNAMolecularMaterial - removed commented l <<
457 - History file fixed <<
458 <<
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 <<
460 - G4DNAMolecularMaterial - attempt to fix nigh <<
461 in chem6 example - do not delete instance of <<
462 <<
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 <<
464 - Added dependency on analysis/g4tools in GNUm <<
465 required after analysis update (analysis-V10 <<
466 <<
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 <<
468 - Fixed coverity warning <<
469 <<
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 <<
471 - Fixed coverity warnings <<
472 - Fix of IRT bug <<
473 (protection for the crash induced by empty re <<
474 <<
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 <<
476 - Add missing G4analysismng module dependency <<
477 <<
478 20-05-20: W.G.Shin emdna-V10-06-05 <<
479 - Revised displacement of OH radicals of B1A1 <<
480 based on momentum conservation in G4DNAWaterDi <<
481 - Added missing History <<
482 <<
483 26-04-20: W.G.Shin emdna-V10-06-04 <<
484 - Fixed coverity test <<
485 <<
486 15-04-20: G.Cosmo emdna-V10-06-03 <<
487 - G4MoleculeDefinition: copy constructor and a <<
488 are not allowed (as for G4ParticleDefinition <<
489 <<
490 19-02-20: W.G.Shin emdna-V10-06-02 <<
491 - Fixed memory issue on G4DNAMolecularReaction <<
492 - Revised headeres of IRT classes <<
493 <<
494 12-02-20: W.G.Shin emdna-V10-06-01 <<
495 - Added protections floating point exception i <<
496 <<
497 10-01-20: W.G.Shin emdna-V10-06-00 <<
498 - Added classes for IRT <<
499 - Added features in management classes for IRT <<
500 G4ITModelProcessor ...) <<
501 - Added features in G4DNAMolecularReactionTabl <<
502 - Added molecules of Plante et al. (2017) (Oxy <<
503 16
504 15-11-19: G.Cosmo emdna-V10-05-11 17 15-11-19: G.Cosmo emdna-V10-05-11
505 - Fixed cases of implicit type conversions fro 18 - Fixed cases of implicit type conversions from size_t to G4int.
506 19
507 8-11-19: HT, tag emdna-V10-05-10 20 8-11-19: HT, tag emdna-V10-05-10
508 - Fixed the exception divide by zero of diffus << 21 - Fixed the exception divide by zero of diffusionCoefficient in
509 G4DNABrownianTransportation::AlongStepGetPhysi 22 G4DNABrownianTransportation::AlongStepGetPhysicalInteractionLength
510 for the case of static molecules (DNA) (diffus 23 for the case of static molecules (DNA) (diffusionCoefficient = 0)
511 24
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 25 24-10-19: J.Apostolakis, tag emdna-V10-05-09
513 - Enabled G4ItNavigator{1,2} to flag if it enc 26 - Enabled G4ItNavigator{1,2} to flag if it encounters new type
514 of external physical volume (meant for adapt 27 of external physical volume (meant for adapting external navigators)
515 28
516 19-10-19: WGS, SI, tag emdna-V10-05-08 29 19-10-19: WGS, SI, tag emdna-V10-05-08
517 - Added new model G4DNAELSEPAElasticModel << 30 - Added new model G4DNAELSEPAElasticModel
518 31
519 11-10-19: WGS, SI, tag emdna-V10-05-07 32 11-10-19: WGS, SI, tag emdna-V10-05-07
520 - G4DNAOneStepThermalizationModel.* : << 33 - G4DNAOneStepThermalizationModel.* :
521 added Kreipl and Meesungnoen amorphous ice mod 34 added Kreipl and Meesungnoen amorphous ice models
522 - G4DNAWaterDissociationDisplacer* : updated 35 - G4DNAWaterDissociationDisplacer* : updated
523 36
524 03-06-2019, MK, tag emdna-V10-05-06 37 03-06-2019, MK, tag emdna-V10-05-06
525 - Fix GCC9 warnings 38 - Fix GCC9 warnings
526 39
527 26-03-2019, HT, tag emdna-V10-05-05 40 26-03-2019, HT, tag emdna-V10-05-05
528 - Added G4DNAMolecule 41 - Added G4DNAMolecule
529 42
530 10-03-2019, MK, tag emdna-V10-05-04 43 10-03-2019, MK, tag emdna-V10-05-04
531 - Fix reaction site issue 44 - Fix reaction site issue
532 - Chemistry: clarify pointer ownership, clean 45 - Chemistry: clarify pointer ownership, clean code
533 46
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 47 11-03-2019, G.Cosmo, tag emdna-V10-05-03
535 - Fixed typos in printouts in G4MolecularConfi 48 - Fixed typos in printouts in G4MolecularConfiguration, G4VITRestDiscreteProcess,
536 G4VITRestProcess, G4DNAElectronHoleRecombina 49 G4VITRestProcess, G4DNAElectronHoleRecombination.
537 50
538 18-01-2019, HT, tag emdna-V10-05-02 51 18-01-2019, HT, tag emdna-V10-05-02
539 - Transformed the exception into warning in G4 52 - Transformed the exception into warning in G4DNAMolecularDissociation
540 53
541 28-12-2018, MK, tag emdna-V10-05-01 54 28-12-2018, MK, tag emdna-V10-05-01
542 DEV-300 : G4DNAChemistryManager clarify pointe 55 DEV-300 : G4DNAChemistryManager clarify pointer ownership
543 56
544 05-01-2019, HT, tag emdna-V10-05-00 57 05-01-2019, HT, tag emdna-V10-05-00
545 - moved the checking position of track status << 58 - moved the checking position of track status
546 in G4ITStepProcessor::SetInitialStep() << 59 in G4ITStepProcessor::SetInitialStep()
547 60
548 01-09-2018, SI, tag emdna-V10-04-10 61 01-09-2018, SI, tag emdna-V10-04-10
549 renamed tag 62 renamed tag
550 63
551 01-09-2018, SI, tag emdna-v10-04-09 64 01-09-2018, SI, tag emdna-v10-04-09
552 - bugzilla 2084 65 - bugzilla 2084
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id 66 https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2084
554 67
555 30-07-2018, SI, tag emdna-V10-04-08 68 30-07-2018, SI, tag emdna-V10-04-08
556 - included upper energy limit of models (2) 69 - included upper energy limit of models (2)
557 70
558 29-07-2018, SI, tag emdna-V10-04-07 71 29-07-2018, SI, tag emdna-V10-04-07
559 - included upper energy limit of models 72 - included upper energy limit of models
560 73
561 01-07-2018, SI, tag emdna-V10-04-06 74 01-07-2018, SI, tag emdna-V10-04-06
562 - added protection in Auger emission 75 - added protection in Auger emission
563 76
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 77 30-06-2018, MS, ZF, SI tag emdna-V10-04-05
565 - updated Si mass in G4DNAGenericIonsManager 78 - updated Si mass in G4DNAGenericIonsManager
566 79
567 22-06-2018, SI tag emdna-V10-04-04 80 22-06-2018, SI tag emdna-V10-04-04
568 - fixed warnings in lepts models 81 - fixed warnings in lepts models
569 82
570 14-05-2018, SI tag emdna-V10-04-03 83 14-05-2018, SI tag emdna-V10-04-03
571 - chemistry update by Mathieu 84 - chemistry update by Mathieu
572 85
573 01-05-2018, SI tag emdna-V10-04-02 86 01-05-2018, SI tag emdna-V10-04-02
574 - chemistry update by Mathieu 87 - chemistry update by Mathieu
575 88
576 09-02-2018, M.Asai tag emdna-V10-04-01 89 09-02-2018, M.Asai tag emdna-V10-04-01
577 - G4DNAMolecularMaterial.cc : 90 - G4DNAMolecularMaterial.cc :
578 GetDensityTableFor() and GetNumMolPerVolTabl 91 GetDensityTableFor() and GetNumMolPerVolTableFor() methods are accepted
579 at G4State_Init rather than G4State_Idle. 92 at G4State_Init rather than G4State_Idle.
580 - Co-works with run-V10-04-01 and global-V10-0 93 - Co-works with run-V10-04-01 and global-V10-04-01.
581 94
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 95 21-12-2017, G.Cosmo tag emdna-V10-04-00
583 - Fixed self-consistency in headers (missing # 96 - Fixed self-consistency in headers (missing #include) in G4IosFlagsSaver,
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff 97 G4KDNode, G4MoleculeIterator and G4LEPTSDiffXS.
585 Fixed spurious definition of G4IT namespace 98 Fixed spurious definition of G4IT namespace in G4ITMultiNavigator header.
586 Thanks to Raphael Isemann for reporting thes 99 Thanks to Raphael Isemann for reporting these.
587 100
588 01-11-2017, MK tag emdna-V10-03-30 101 01-11-2017, MK tag emdna-V10-03-30
589 - remove models/test directory 102 - remove models/test directory
590 103
591 31-10-2017, JA ( tag missing ) 104 31-10-2017, JA ( tag missing )
592 - G4KDNode.hh: Add missing included file - nee 105 - G4KDNode.hh: Add missing included file - needed in test
593 106
594 16-08-2017, SI tag emdna-V10-03-28 107 16-08-2017, SI tag emdna-V10-03-28
595 - updated variable types in models 108 - updated variable types in models
596 109
597 10-08-2017, SI tag emdna-V10-03-27 110 10-08-2017, SI tag emdna-V10-03-27
598 - test 111 - test
599 112
600 10-08-2017, SI tag emdna-V10-03-26 113 10-08-2017, SI tag emdna-V10-03-26
601 - same as previous 114 - same as previous
602 115
603 09-08-2017, SI tag emdna-V10-03-25 116 09-08-2017, SI tag emdna-V10-03-25
604 - same as previous 117 - same as previous
605 118
606 09-08-2017, SI tag emdna-V10-03-24 119 09-08-2017, SI tag emdna-V10-03-24
607 - G4DNAEmfietzoglouIonisationModel: added prot 120 - G4DNAEmfietzoglouIonisationModel: added protection for out of bound access
608 121
609 03-08-2017, VI tag emdna-V10-03-23 122 03-08-2017, VI tag emdna-V10-03-23
610 - G4DNAExcitation, G4DNAIonisation - make cohe 123 - G4DNAExcitation, G4DNAIonisation - make coherent model initialisation
611 124
612 28-07-2017, SI, tag emdna-V10-03-22 125 28-07-2017, SI, tag emdna-V10-03-22
613 - added stationary mode flag to CPA100 ionisat 126 - added stationary mode flag to CPA100 ionisation.
614 127
615 04-07-2017, SI, tag emdna-V10-03-21 128 04-07-2017, SI, tag emdna-V10-03-21
616 - added tagging of atom. deexc. products in io 129 - added tagging of atom. deexc. products in ionisation models.
617 130
618 31-05-2017, SM, tag emdna-V10-03-20 131 31-05-2017, SM, tag emdna-V10-03-20
619 - Correct windows issues with path of diff. CS 132 - Correct windows issues with path of diff. CS data file.
620 133
621 31-05-2017, SI, tag emdna-V10-03-19 134 31-05-2017, SI, tag emdna-V10-03-19
622 - roll-back (Windows issues with previous tag) 135 - roll-back (Windows issues with previous tag)
623 136
624 24-05-2017, SI, tag emdna-V10-03-18 137 24-05-2017, SI, tag emdna-V10-03-18
625 - added tagging of atom. deexc. products in io 138 - added tagging of atom. deexc. products in ionisation models.
626 139
627 11-05-2017, VI tag emdna-V10-03-17 140 11-05-2017, VI tag emdna-V10-03-17
628 - fix for gcc 7.1 warnings in G4DNACrossSectio << 141 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
629 142
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 143 10-05-2017, NL, MK, SI, tag emdna-V10-03-16
631 - fix for gcc 7.1 warnings in G4DNACrossSectio << 144 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
632 145
633 03-05-2017, SM, tag emdna-V10-03-15 146 03-05-2017, SM, tag emdna-V10-03-15
634 - add the new G4DNADummyModel and allow the co << 147 - add the new G4DNADummyModel and allow the combination of G4VEmModel and G4VDNAModel in G4DNAModelInterface.
635 148
636 27-04-2017, SM, tag emdna-V10-03-14 149 27-04-2017, SM, tag emdna-V10-03-14
637 - correct small typo mistakes. 150 - correct small typo mistakes.
638 151
639 27-04-2017, SM, tag emdna-V10-03-13 152 27-04-2017, SM, tag emdna-V10-03-13
640 - update Models/G4DNAModelInterface to correct 153 - update Models/G4DNAModelInterface to correctly use G4DNAMolecularMaterial
641 154
642 10-03-2017, MK, tag emdna-V10-03-12 155 10-03-2017, MK, tag emdna-V10-03-12
643 - update utils/GNUmakefile 156 - update utils/GNUmakefile
644 157
645 13-02-2017, MK, tag emdna-V10-03-11 158 13-02-2017, MK, tag emdna-V10-03-11
646 - G4DNAMolecularMaterial: update doxygen doc 159 - G4DNAMolecularMaterial: update doxygen doc
647 160
648 13-02-2017, MK, tag emdna-V10-03-10 161 13-02-2017, MK, tag emdna-V10-03-10
649 - G4DNAMolecularMaterial: << 162 - G4DNAMolecularMaterial:
650 remove newly introduced methods, add fatal e 163 remove newly introduced methods, add fatal exception if used
651 add doxygen documentation 164 add doxygen documentation
652 165
653 10-02-2017, MK, tag emdna-V10-03-09 166 10-02-2017, MK, tag emdna-V10-03-09
654 - Introducing G4PhysChemIO 167 - Introducing G4PhysChemIO
655 - Move call to G4TrackList::Pop(track) from G4 168 - Move call to G4TrackList::Pop(track) from G4ITTrackingManager
656 to G4ITTrackHolder. And make sure track stat 169 to G4ITTrackHolder. And make sure track status is set to fStopAndKill
657 when G4ITTrackHolder::PushToKill is called. 170 when G4ITTrackHolder::PushToKill is called.
658 171
659 09-02-2017, MK, tag emdna-V10-03-08 172 09-02-2017, MK, tag emdna-V10-03-08
660 - G4KDNode.hh: remove unused G4ThreeVector hea 173 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation 174 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t 175 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization 176 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K 177 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665 178
666 24-01-2017, SM, tag emdna-V10-03-07 179 24-01-2017, SM, tag emdna-V10-03-07
667 - add a ifdef to remove a warning (windows onl 180 - add a ifdef to remove a warning (windows only) related to the use of several levels of map.
668 181
669 23-01-2017, SM, tag emdna-V10-03-06 182 23-01-2017, SM, tag emdna-V10-03-06
670 - add missing G4DNAModelInterface files (.hh a 183 - add missing G4DNAModelInterface files (.hh and .cc) to the source.cmake
671 184
672 23-01-2017, SM CV, tag emdna-V10-03-05 185 23-01-2017, SM CV, tag emdna-V10-03-05
673 - add new G4DNAPTB* classes and the structure 186 - add new G4DNAPTB* classes and the structure of the new material management system
674 187
675 14-01-2017, MK, tag emdna-V10-02-37 188 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingMan 189 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction 190 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Schedule << 191 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679 192
680 28-12-2016, SI, tag emdna-V10-03-04 193 28-12-2016, SI, tag emdna-V10-03-04
681 - extended upper energy limit of protons for << 194 - extended upper energy limit of protons for
682 G4DNARuddIonisationExtendedModel 195 G4DNARuddIonisationExtendedModel
683 196
684 27-12-2016, SI, tag emdna-V10-03-03 197 27-12-2016, SI, tag emdna-V10-03-03
685 - updated references of CPA100 classes 198 - updated references of CPA100 classes
686 199
687 23-12-2016, SI, tag emdna-V10-03-02 200 23-12-2016, SI, tag emdna-V10-03-02
688 - updated sources.cmake 201 - updated sources.cmake
689 202
690 23-12-2016, SI, tag emdna-V10-03-01 203 23-12-2016, SI, tag emdna-V10-03-01
691 - commit of first CPA100 classes, part 2 204 - commit of first CPA100 classes, part 2
692 205
693 21-12-2016, SI, tag emdna-V10-03-00 206 21-12-2016, SI, tag emdna-V10-03-00
694 - commit of first CPA100 classes 207 - commit of first CPA100 classes
695 208
696 27-11-2016, MK, tag emdna-V10-02-36 209 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 210 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 211 - G4DNADamages -> G4DNADamage
699 212
700 17-11-2016, MK, tag emdna-V10-02-35 213 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 214 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 215
703 16-11-2016, MK, tag emdna-V10-02-34 216 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat << 217 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 218 displacement types can be thread shared
706 - G4TrackState: Move implementation of static << 219 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 220 G4VTrackStateID::Create() to cc file - windows crash
708 221
709 15-11-2016, MK, tag emdna-V10-02-33 222 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 223 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 224
712 14-11-2016, MK, tag emdna-V10-02-32 225 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t << 226 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 227 windows platforms
715 228
716 14-11-2016, MK, tag emdna-V10-02-31 229 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: << 230 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 231 tag init constexpr factor with number rather than expression
719 232
720 14-11-2016, MK, tag emdna-V10-02-30 233 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 234 - Use CLHEP::pi instead of M_PI
722 235
723 14-11-2016, MK, tag emdna-V10-02-29 236 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 237 - Correct bracket enclosing
725 238
726 14-11-2016, MK, tag emdna-V10-02-28 239 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 240 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 241 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 242 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 243 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 244 - Adds and use G4CTCounter
732 245
733 02-11-2016, MK, tag emdna-V10-02-27 246 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom << 247 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 248 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo << 249 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety << 250 computeStep & computeSafety
738 251
739 07-08-2016, SI, tag emdna-V10-02-26 252 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 253 - added stationnary mode to sub-excitation electron processes
741 254
742 23-06-2016, MK 255 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 256 - G4Scheduler: move G4IosFlagsSaver to Process()
744 257
745 3-06-2016, MK, tag emdna-V10-02-25 258 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 259 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 260 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 261 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 262
750 3-06-2016, MK, tag emdna-V10-02-24 263 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 264 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 265 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 266 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 267 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 268 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 269 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc << 270 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 271 model used for another part than e-
759 272
760 1-06-2016, MK, tag emdna-V10-02-23 273 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 274 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 275 logic for interface with physics models
763 276
764 31-05-2016, MK, tag emdna-V10-02-22 277 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 278 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 279
767 28-05-2016, MK, tag emdna-V10-02-21 280 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 281 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 282 one of the previous tags
770 283
771 19-05-2016, MK, tag emdna-V10-02-20 284 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 285 - G4ITNavigator: remove warnings on gcc6.1
773 286
774 17-05-2016, MK, tag emdna-V10-02-19 287 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 288 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 289 correct model and process names for solvation
777 290
778 12-05-2016, MK, tag emdna-V10-02-18 291 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: << 292 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 293 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne << 294 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 295 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 296 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 297 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 298 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 299 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim << 300 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 301 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 302 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 303 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 304 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 305 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 306 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 307 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 308 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 309 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 310 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 311 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 312 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 313 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 314 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 315 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv << 316 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 317 created; otherwise, the primary electron is killed
805 318
806 30-04-2016, MK, tag emdna-V10-02-17 319 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 320 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 321
809 30-04-2016, MK, tag emdna-V10-02-16 322 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 323 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p << 324 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 325 unregistered molecule definition
813 326
814 22-04-2016, MK, tag emdna-V10-02-15 327 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 328 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 329 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 330
818 22-04-2016, MK, tag emdna-V10-02-14 331 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit << 332 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 333 remove usage of internal energy boundaries
821 334
822 19-03-2016, SI, tag emdna-V10-02-13 335 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 336 - added nrj extensibility to SR and USR models
824 337
825 11-03-2016, SI, tag emdna-V10-02-12 338 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 339 -roll back to files in emdna-V10-02-06
827 340
828 10-03-2016, SI, tag emdna-V10-02-11 341 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 342 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 343 and G4DNAScreenedRutherfordElasticModel
831 344
832 10-03-2016, SI, tag emdna-V10-02-10 345 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 346 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 347
835 07-03-2016, SI, tag emdna-V10-02-09 348 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 349 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 350 of G4DNAUeharaScreenedRutherfordElasticModel
838 351
839 06-03-2016, SI, tag emdna-V10-02-08 352 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 353 -removed useless G4Pow declaration
841 354
842 04-03-2016, SI, tag emdna-V10-02-07 355 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 356 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 357 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 358
846 02-03-2016, SI, tag emdna-V10-02-06 359 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 360 -replaced std::exp by G4Exp
848 361
849 02-03-2016, SI, tag emdna-V10-02-05 362 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 363 -replaced std::exp by G4Exp
851 364
852 02-03-2016, SI, tag emdna-V10-02-04 365 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 366 -replaced std::exp by G4Exp
854 367
855 01-03-2016, SI, tag emdna-V10-02-03 368 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 369 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 370 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 371 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 372 by S. Okada (KEK, JP)
860 373
861 17-02-2016, MK, tag emdna-V10-02-02 374 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 375 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 376
864 16-12-2015, SI, tag emdna-V10-02-01 377 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: << 378 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 379 added protection on energy for interpolation method change
867 380
868 16-12-2015, SI, tag emdna-V10-02-00 381 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add << 382 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 383 energy
871 384
872 13-11-2015, MK, tag emdna-V10-01-55 385 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 386 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 387 file
875 388
876 10-11-2015, MK, tag emdna-V10-01-54 389 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 390 * remove unused variables
878 391
879 10-11-2015, MK, tag emdna-V10-01-53 392 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 393 * Coverity fixes
881 394
882 06-11-2015, MK, tag emdna-V10-01-52 395 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 396 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 397
885 06-11-2015, MK, tag emdna-V10-01-51 398 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 399 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 400 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 401
889 06-11-2015, MK, tag emdna-V10-01-50 402 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 403 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 404 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 405 * Add G4ITStepProcessorState_Lock.hh
893 406
894 06-11-2015, MK, tag emdna-V10-01-49 407 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 408 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 409 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 410 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 411 but in the source file - causing crashes on windows
899 412
900 04-11-2015, MK, tag emdna-V10-01-48 413 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 414 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 415 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 416 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 417 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 418 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 419 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 420 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 421 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 422 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using << 423 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 424 all dissociation products have been defined (they will just not be taken
912 into account) 425 into account)
913 * G4DNAMolecularReactionTable: delete reaction 426 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 427
915 03-11-2015, MK, tag emdna-V10-01-47 428 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 429 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac << 430 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 431 the call
919 432
920 03-11-2015, MK, tag emdna-V10-01-46 433 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 434 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 435 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 436 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 437 (causing navigator complains)
925 << 438
926 03-11-2015, MK, tag emdna-V10-01-45 439 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 440 * G4Serialize: Add definition in header for G4String
928 441
929 02-11-2015, MK, tag emdna-V10-01-44 442 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 443 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 444 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 445 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 446 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon << 447 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 448 -> G4MolecularConfMan is taking care of this
936 << 449
937 30-10-2015, MK, tag emdna-V10-01-43 450 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter << 451 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 452 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 453 * Unit tests corrected
941 * G4VITDiscreteProcess added 454 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 455 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 456 * Intermediate update for 10.2 release
944 << 457
945 27-10-2015, MK, tag emdna-V10-01-42 458 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 459 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 << 460
948 26-10-2015, MK, tag emdna-V10-01-41 461 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 462 * Sanche model: try to solve std::vector out of bounds
950 463
951 23-10-2015, MK, tag emdna-V10-01-40 464 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 465 * remove all CLHEP::shared_ptr usage
953 << 466
954 23-10-2015, CV, SM, tag emdna-V10-01-39 467 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel << 468 * Addded base class G4VDNAPTBModel
956 469
957 28-09-2015, SI, tag emdna-V10-01-38 470 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 471 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 472
960 19-09-2015, MK, tag emdna-V10-01-37 473 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 474 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 475 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 476
964 17-09-2015, MK, tag emdna-V10-01-36 477 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 478 * G4MoleculeGun: Remove compilation warnings
966 479
967 04-09-2015 MK, tag emdna-V10-01-35 480 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 481 * Fix G4MoleculeGun compilation errors
969 482
970 03-09-2015 SI, tag emdna-V10-01-34 483 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 484 * Added stationary regime to all inelastic models
972 485
973 19-08-2015, MK 486 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 487 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 488 - compatible with both Smoluchowski & Gillespie models
976 489
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 490 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 491 * Added easier handling of cumulative proba. in SR elastic models
979 492
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 493 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 494 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 495 declaration of G4MoleculeShoot.
983 496
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 497 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 498 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 499 declaration of G4MoleculeShootMessenger.
987 500
988 12-08-2015, MK, tag emdna-V10-01-29 501 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 502 * Add G4Serialize in the build tree temporarily
990 503
991 12-08-2015, MK, tag emdna-V10-01-28 504 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 505 * G4Serialize added
993 506
994 12-08-2015, MK 507 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 508 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 509
997 24-07-2015, MK 510 24-07-2015, MK
998 - G4MolecularReactionTable 511 - G4MolecularReactionTable
999 * Add get methods 512 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 513 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 514 * Molecule gun : place randomly in a box
1002 515
1003 15-07-2015, MK 516 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA << 517 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 518 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 519 * processes & models initialisation again
1007 520
1008 15-07-2015, MK, tag emdna-V10-01-26 521 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 522 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 523 * add macro to prevent warnings in non-verbose mode
1011 524
1012 11-07-2015, MK, tag emdna-V10-01-25 525 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 526 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 527 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 528
1016 10-07-2015, MK, tag emdna-V10-01-24 529 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 530 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 531 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 532 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 533 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 534
1022 08-07-2015, MK, tag emdna-V10-01-23 535 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 536 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 537 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 538 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose << 539 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 << 540 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 541 - G4MoleculeDefinition:
1029 ::SetFormatedName added 542 ::SetFormatedName added
1030 ::NewConfiguration methods added 543 ::NewConfiguration methods added
1031 ::NewConfiguration added 544 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 545 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 546 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 547 ::Finalize added
1035 - G4MolecularConfiguration: << 548 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 549 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 550 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 551 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec << 552 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula << 553 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 554 than molecule models
1042 - G4Molecule add constructor where only G4Mol 555 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 556 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 557 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 558 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 559 - G4DNAElectronHoleRecombination added
1047 560
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 561 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c << 562 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 563 fasterCode usage on shell selection.
1051 564
1052 26-06-2015, MK 565 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to << 566 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 567 warning message description
1055 568
1056 16-06-205, MK 569 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 570 - Add G4Scheduler::GetGun()
1058 571
1059 16-06-2015, MK, tag emdna-V10-01-21 572 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 573 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 574 - G4DNAIonElasticModel: clean and fix double free
1062 575
1063 12-06-2015, MK, tag emdna-V10-01-20 576 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 577 - remove virtual keyword from G4IT::GetPosition()
1065 578
1066 04-06-2015, MK 579 04-06-2015, MK
1067 - just cosmetics 580 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 581 - remove virtual keyword from G4IT::operator[]
1069 582
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 583 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 584 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 585 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 586 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 587 - Fully qualify std::string elsewhere as needed to adjust
1075 588
1076 22-05-2015, John Allison, tag emdna-V10-01-18 589 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 590 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 591 "G4Threading::IsMasterThread()".
1079 592
1080 17-05-2015, MK, tag emdna-V10-01-17 593 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 594 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 595 - Correct sources.cmake
1083 - Born headears: includes both model versions << 596 - Born headears: includes both model versions when proxy header is included
1084 597
1085 16-05-2015, MK, tag emdna-V10-01-16 598 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 599 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 600 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 601 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 602 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 603 - Add G4DNABornExcitationModel2 (temporary)
1091 604
1092 15-05-2015, MK, tag emdna-V10-01-15 605 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 606 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 607
1095 14-05-2015, MK, tag emdna-V10-01-14 608 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 609 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 610
1098 14-05-2015, MK, tag emdna-V10-01-13 611 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 612 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 613 - G4ITReaction: try to solve compilation error
1101 614
1102 12-05-2015, MK, tag emdna-V10-01-12 615 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 616 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 617
1105 12-05-2015, MK, tag emdna-V10-01-11 618 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 619 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 620
1108 11-05-2015, MK, tag emdna-V10-01-10 621 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 622 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 623 +Add GetPartialCrossSection
1111 +Code cleaning 624 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 625 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 626 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 627 - G4DNAChemistryManager::GetValue(...) added
1115 628
1116 02-05-2015, MK 629 02-05-2015, MK
1117 - Update G4TrackState & related classes 630 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: << 631 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian << 632 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 633 +comment useless method
1121 - G4Scheduler: << 634 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS << 635 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime << 636 +remove fTmpEndTime
1124 +Add CanICarryOn 637 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 638 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 639
1127 18-03-2015, MK, tag emdna-V10-01-08 640 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 641 - Same as before, just add the missing History file
1129 642
1130 18-03-2015, MK, tag emdna-V10-01-07 643 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 644 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 645 instead of a reference
1133 646
1134 12-02-2015, MK, tag emdna-V10-01-06 647 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 648 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 649 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi << 650 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 651
1139 11-02-2015, MK, tag emdna-V10-01-05 652 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 653 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 654 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 655 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 656
1144 16-01-2015, SI, tag emdna-V10-01-04 657 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 658 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 659
1147 14-12-2014, MK, tag emdna-V10-01-03 660 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 661 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval << 662 - ScreenRutherfordElastic: correct retrieval of water density
1150 663
1151 13-12-2014, SI, tag emdna-V10-01-02 664 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 665 - Added elastic model by H. Tran.
1153 666
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 667 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 668 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 669 to allow for compilation on Linux/clang-3.5.
1157 670
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 671 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 672 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 673 include missing files:
1161 G4ITTransportationManager.icc 674 G4ITTransportationManager.icc
1162 G4KDNode.icc 675 G4KDNode.icc
1163 G4KDTree.icc 676 G4KDTree.icc
1164 G4MoleculeFinder.hh 677 G4MoleculeFinder.hh
1165 678
1166 01-12-2014, MK, tag emdna-V10-00-63 679 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 680 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 681 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 682 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 683 when the particle has reached a boundary
1171 684
1172 28-11-2014, MK, tag emdna-V10-00-62 685 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 686 - Retag
1174 687
1175 28-11-2014, MK, tag emdna-V10-00-61 688 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 689 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 690 - Fix Brownian navigation
1178 - Some fixes related to scheduler 691 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 692 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 693 - Enhance comments
1181 694
1182 24-11-2014, MK, tag emdna-V10-00-60 695 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 696 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 697
1185 24-11-2014, MK, tag emdna-V10-00-59 698 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 699 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 700 - Remove useless verbose
1188 - Try to compile on all platforms 701 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 702 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 703 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 704 Just registering constructor is enough to initialized the chemistry
1192 705
1193 24-11-2014, MK, tag emdna-V10-00-58 706 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 707 - G4FastList: remove all friend declarations
1195 708
1196 22-11-2014, MK, tag emdna-V10-00-57 709 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 710 - Another attempt to compile G4FastList on all platforms
1198 711
1199 22-11-2014, MK, tag emdna-V10-00-56 712 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 713 - Attempt to compile G4FastList on all platforms
1201 714
1202 21-11-2014, MK, tag emdna-V10-00-55 715 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 716 - Attempt to compile G4FastList with clang
1204 717
1205 21-11-2014, MK, tag emdna-V10-00-54 718 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 719 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou << 720 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 721 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 722 - Update G4ITNavigator2 to the G4Navigator of John
1210 723
1211 21-11-2014, MK, tag emdna-V10-00-53 724 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b << 725 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 726 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 727 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time << 728 is false by default --> uses the random time computation for crossing
1216 boundaries 729 boundaries
1217 730
1218 20-11-2014, SI, tag emdna-V10-00-52 731 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 732 - Improved error message for missing data in PW elastic model
1220 733
1221 08-11-2014, MK, tag emdna-V10-00-51 734 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 735 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 736 when the asked item is not found
1224 737
1225 03-11-2014 MK, tag emdna-V10-00-50 738 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 739 - correct track creation by G4MoleculeGunMessenger
1227 740
1228 03-11-2014 MK, tag emdna-V10-00-49 741 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 742 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 743 - Correct a bug in G4MoleculeGun
1231 744
1232 28-10-2014 PA, tag emdna-V10-00-48 745 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 746 - correct compilation warnings
1234 747
1235 28-10-2014 PA, tag emdna-V10-00-47 748 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 749 - correct compilation warnings
1237 750
1238 28-10-2014 PA, tag emdna-V10-00-46 751 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 752 - correction in sources.cmake
1240 753
1241 28-10-2014 PA, tag emdna-V10-00-45 754 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 755 - retag to add LEPTS
1243 756
1244 28-10-2014 PA, tag emdna-V10-00-44 757 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 758 - add LEPTS
1246 759
1247 25-10-2014 MK, tag emdna-V10-00-43 760 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 761 - remove useless G4VITScheduler
1249 762
1250 25-10-2014 MK, tag emdna-V10-00-42 763 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 764 - correct warnings
1252 765
1253 24-10-2014 MK, tag emdna-V10-00-41 766 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 767 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 768 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 769 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 770 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 771 - G4ITFinder added
1259 - G4VITTrackHolder added 772 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 773 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 774 - code cleaned + useless classes removed
1262 775
1263 24-10-2014 MK, tag emdna-V10-00-40 776 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 777 - G4ITStepManager: remove verbose at closure time
1265 778
1266 21-10-2014 MK, tag emdna-V10-00-39 779 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 780 - try to solve crash at closure time
1268 781
1269 21-10-2014 MK, tag emdna-V10-00-38 782 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 783 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 784 table when deleted
1272 - update disclaimer 785 - update disclaimer
1273 786
1274 17-10-2014 MK, tag emdna-V10-00-37 787 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 788 - clean code
1276 - G4ITStepManager: one can ask why simulation 789 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 790 - remove useless verbose
1278 791
1279 17-10-2014 MK, tag emdna-V10-00-36 792 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 793 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 794 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 795 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 796
1284 10-10-2014 MK, tag emdna-V10-00-35 797 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 798 Avoid use of std::map at the application level in TimeStepAction
1286 799
1287 07-10-2014 MK, tag emdna-V10-00-34 800 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 801 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 802 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 803 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 804
1292 07-10-2014 MK, tag emdna-V10-00-33 805 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 806 Initialize G4ITStepManager in G4DNAChemistryManager
1294 807
1295 17-09-2014 MK, tag emdna-V10-00-32 808 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 809 Add G4ITStepManager + messenger
1297 Tag before architecture change 810 Tag before architecture change
1298 811
1299 12-07-2014 SI, tag emdna-V10-00-31 812 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 813 Removed obsolete class for electron excitation
1301 814
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 815 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 816 - Get rid of obsolete 'register' keyword in code.
1304 817
1305 05-06-2014 SI, tag emdna-V10-00-29 818 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 819 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D << 820 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 821 G4GenericIon usage
1309 - requires G4EMLOW6.39 822 - requires G4EMLOW6.39
1310 823
1311 04-06-2014 MK, tag emdna-V10-00-28 824 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 825 Remove directory management/include/impl
1313 Prepare for release 826 Prepare for release
1314 827
1315 04-06-2014 MK, tag emdna-V10-00-27 828 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 829 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 830 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 831 Avoid usage of molecule iterators as pointers
1319 832
1320 03-06-2014 SI, tag emdna-V10-00-26 833 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 834 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 835
1323 28-05-2014 VI, SI tag emdna-V10-00-25 836 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 837 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 838 Ionisation models switch to use angular generator
1326 interface 839 interface
1327 840
1328 12.05.2014 MK, tag emdna-V10-00-24 841 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 842 Try to remove warnings 4
1330 843
1331 12.05.2014 MK, tag emdna-V10-00-23 844 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 845 Try to remove warnings 3
1333 846
1334 12.05.2014 MK, tag emdna-V10-00-22 847 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 848 Try to remove warnings 2
1336 849
1337 12.05.2014 MK, tag emdna-V10-00-21 850 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 851 Try to remove warnings
1339 852
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 853 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx << 854 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 855 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 856 G4EMLOW6.38 needed
1344 857
1345 07-04-2014 SI tag emdna-V10-00-19 858 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 859 Changed faster method interpolation in
1347 G4DNABornIonisationModel << 860 G4DNABornIonisationModel
1348 861
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 862 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 863 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 864 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 865 Corrected order of inclusion of some headers and use of <>/"".
1353 866
1354 04-04-2014 MK tag emdna-V10-00-17 867 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 868 Try to solve warnings when G4VERBOSE is off
1356 869
1357 02-04-2014 MK tag emdna-V10 870 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 871 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 872
1360 02-04-2014 MK tag emdna-V10 873 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 874 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 875
1363 02-04-2014 MK tag emdna-V10 876 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 877 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 878 -> this part is withdrawn for now
1366 879
1367 02-04-2014 MK tag emdna-V10 880 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 881 - version 2 : try fixing the build error on mac
1369 882
1370 02-04-2014 MK tag emdna-V10 883 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 884 - version 1 : try to fix build errors and warnings on mac
1372 885
1373 02-04-2014 MK tag emdna-V10 886 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 887 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 888 (G4MemStat & G4MolecularConfiguration)
1376 889
1377 02-04-2014 MK tag emdna-V10 890 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 891 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 892 (problem coming from having as a friend class a template argument)
1380 893
1381 02-04-2014 MK tag emdna-V10 894 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla << 895 - try to fix build error on windows platform
1383 896
1384 01-04-2014 MK tag emdna-V10 897 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 898 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 899 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 900
1388 01-04-2014 MK tag emdna-V10 901 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 902 - reset CMakeLists.txt
1390 903
1391 01-04-2014 MK tag emdna-V10 904 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 905 - update chemistry
1393 906
1394 01-04-2014 SI tag emdna-V10-00-05 907 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 908 - Modified calculation of secondary kinetic for fast code
1396 909
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 910 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 911 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 912 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 913 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 914
1402 25-03-2014 VS, SI tag emdna-V10-00-03 915 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 916 - Added several clear() to vectors for MT
1404 917
1405 17-03-2014 SI tag emdna-V10-00-02 918 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc << 919 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 920 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 921 to be used with G4EMLOW6.36
1409 922
1410 12-12-2013 M.K tag emdna-V10-00-01 923 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 924 - G4DNAMolecularMaterial: Remove unused variable
1412 925
1413 12-12-2013 M.K tag emdna-V10-00-00 926 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to << 927 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 928 a model is not created at initialisation time
1416 929
1417 21-11-2013 V.I. tag emdna-V09-06-22 930 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 931 - G4ITStepProcessor2 - removed obsolete unused header
1419 932
1420 01-11-2013 M.K tag emdna-V09-06-21 933 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 934 - Correct incorrect singleton check introduced in previous tag
1422 935
1423 01-11-2013 M.K tag emdna-V09-06-20 936 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 937 - Prepare for release bis
1425 938
1426 01-11-2013 M.K tag emdna-V09-06-19 939 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 940 - Prepare for release
1428 941
1429 10-10-2013 M.K. tag emdna-V09-06-18 942 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 943 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 944
1432 06-10-2013 M.K. tag emdna-V09-06-17 945 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 946 - Same as before once again
1434 947
1435 03-10-2013 M.K. tag emdna-V09-06-16 948 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 949 - Same as before
1437 950
1438 03-10-2013 M.K. tag emdna-V09-06-15 951 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 952 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t << 953 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 954 by the user - stage 1
1442 955
1443 14-09-2013 M.Asai tag emdna-V09-06-14 956 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 957 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 958 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 959 with virtual keyword in G4VITProcess.
1447 960
1448 12-09-2013 M.K. tag emdna-V09-06-13 961 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 962 Correction of an inadvertent modification introduced in previous tag
1450 963
1451 12-09-2013 M.K. tag emdna-V09-06-12 964 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 965 Correct bound checks in G4ITManager.icc
1453 966
1454 16-08-2013 S.I. tag emdna-V09-06-11 967 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 968 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 969
1457 16-08-2013 S.I. tag emdna-V09-06-10 970 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 971 Added G4DNAIons
1459 972
1460 25-06-2013 M.K. tag emdna-V09-06-09 973 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 974 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet << 975 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 976 auto_ptr according to c++ std version
1464 977
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 978 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 979 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 980 for problem accidentally introduced in previous tag.
1468 981
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 982 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 983 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 984 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 985 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 986 compilation on Windows.
1474 987
1475 06-06-2013 S.I. tag emdna-V09-06- 988 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 989 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 990 Requires G4EMLOW version 6.33
1478 991
1479 25-05-2013 M.K. tag emdna-V09-06- 992 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 993 *Fix warning compilation in G4KDMap for specific gcc version
1481 994
1482 24-05-2013 M.K. tag emdna-V09-06- 995 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi << 996 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 997 but still not in usage
1485 998
1486 23-05-2013 M.K. tag emdna-V09-06- 999 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 1000 * G4KDMap : try fix error on std:ceil call on windows
1488 1001
1489 23-V09-06-03-05-2013 M.K. tag emd 1002 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 1003 * G4KDMap : used deque::iterator
1491 1004
1492 1005
1493 22-05-2013 M.K. tag emdna-V09-06- 1006 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 1007 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 1008 * G4KDMap : pop out elements from map
1496 1009
1497 22-05-2013 M.K. tag emdna-V09-06-00 1010 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global << 1011 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager << 1012 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 1013 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 1014 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 1015 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 1016 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali << 1017 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes << 1018 intialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI << 1019 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 1020
1508 12-11-2012 M.K tag emdna-V09-05- 1021 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 1022 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 1023 coverity warnings (rev 64993)
1511 1024
1512 06-11-2012 G.Cosmo tag emdna-V09 1025 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 1026 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 1027 for objects in maps...
1515 1028
1516 04-11-2012 M.K. tag emdna-V09-05-33 1029 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 1030 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 1031 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 1032 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 1033 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 1034 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 1035 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 1036 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 1037 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 1038 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 1039 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 1040 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 1041 add "else" before "if" statements and
1529 add variables to avoid ma 1042 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 1043 dna.files : update files (rev 64725)
1531 1044
1532 03-11-2012 S.I. tag emdna-V09-05-32 1045 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 1046 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 1047 classes
1535 1048
1536 24-10-2012 M.K tag emdna-V09 1049 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 1050 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 1051 (previously commented)
1539 1052
1540 23-10-2012 M.K tag emdna-V09 1053 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 1054 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 1055 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 1056
1544 18-10-2012 M.K tag emdna-V09 1057 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 1058 Previous tag did not include history changes
1546 1059
1547 18-10-2012 M.K tag emdna-V09 1060 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 1061 Remove warning
1549 1062
1550 17-10-2012 M.K tag emdna-V09 1063 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 1064 Correct a typo from previous tag
1552 1065
1553 17-10-2012 M.K tag emdna-V09 1066 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 1067 Correct information in headers
1555 Rename G4DNADiffustionControlledM 1068 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 1069 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 1070
1558 01-10-2012 SI, P.Pater tag emdna-V09 1071 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 1072 Force kinetic energy to zero for real killings in models.
1560 1073
1561 12-07-2012 G.Cosmo tag emdna-V09 1074 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 1075 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 1076 constants, in plan to remove implicit inclusion from globals.hh.
1564 1077
1565 11.07.2012 M.K tag emdna-V09 1078 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 1079 Correct warnings introduce in previous tag
1567 1080
1568 11.07.2012 M.K tag emdna-V09 1081 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 1082 Tag to be proposed
1570 1083
1571 25.06.2012 M.K tag emdna-V09-05-21 1084 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 1085 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 1086 Modify molecule's name
1574 << 1087
1575 21.06.2012 S.I tag emdna-V09-05-20 1088 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte << 1089 Update of electron elastic scattering low limit
1577 1090
1578 09.06.2012 M.K tag emdna-V09-05-19 1091 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 1092 Fixed shadowing
1580 1093
1581 04.06.2012 M.K tag emdna-V09-05-18 1094 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 1095 Add G4ITTrackingInteractivity + correct coverity warnings
1583 1096
1584 24.05.2012 M.K tag emdna-V09-05-17 1097 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 1098 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 1099
1587 23.05.2012 M.K tag emdna-V09-05-16 1100 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 1101 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 1102 G4ITStepManager
1590 Prevent call of destructor of G4I 1103 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 1104 G4DNAChemistryManager
1592 1105
1593 23.05.2012 M.K tag emdna-V09-05-15 1106 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 1107 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 1108 when one of its methods is called using a material that is
1596 not defined as a molecule 1109 not defined as a molecule
1597 1110
1598 21.05.2012 M.K tag emdna-V09-05-14 1111 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 1112 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 1113 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 1114 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 1115 Modify all models to use G4DNAMolecularMaterial
1603 1116
1604 14.05.2012 M.K tag emdna-V09-05-13 1117 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 1118 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 1119 Add G4DNADamages
1607 1120
1608 10.05.2012 M.K tag emdna-V09-05-12 1121 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 1122 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 1123 from UserReactionAction::EndProcessing()
1611 1124
1612 08.05.2012 M.K tag emdna-V09-05-11 1125 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 1126 Use inverseErf from CLHEP
1614 1127
1615 03.05.2012 M.K tag emdna-V09-05-10 1128 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 1129 Add erfc function for windows compilator (VC++)
1617 1130
1618 03.05.2012 M.K tag emdna-V09-05-09 1131 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 1132 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 1133
1621 03.05.2012 M.K tag emdna-V09-05-08 1134 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 1135 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 1136 Add new methods in G4ChemistryManager :
1624 - PushMolecule 1137 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 1138 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 1139 Reset() at the end of G4ITStepManager::Process()
1627 1140
1628 30.03.2012 M.K tag emdna-V09-05-07 1141 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 1142 Same as emdna-V09-05-06
1630 1143
1631 30.03.2012 M.K tag emdna-V09-05-06 1144 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 1145 1) Add separate navigator for synchronous tracking
1633 New classes : 1146 New classes :
1634 * G4ITTransportationManager 1147 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 1148 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 1149 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 1150 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 1151 3) Solve bugs with normal and brownian ITTransportation
1639 1152
1640 14.03.2012 M.K tag emdna-V09-05-05 1153 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 1154 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 1155 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 1156 -> become size_t + related changes
1644 * when a poststep process propo 1157 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 1158 => considered as a time, and transportation::computestep
1646 is used 1159 is used
1647 1160
1648 14.03.2012 M.K tag emdna-V09-05-04 1161 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 1162 Fix compilation warning
1650 1163
1651 14.03.2012 M.K tag emdna-V09-05-03 1164 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 1165 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 1166 Fix coverity warnings
1654 1167
1655 18.01.2012 S.I. tag emdna-V09 1168 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 1169 Removal of G4Water* classes in utils
1657 1170
1658 11.01.2012 M.K tag emdna-V09 1171 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 1172 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 1173 concerning the final position of the solvated electron
1661 using Sanche thermalization 1174 using Sanche thermalization
1662 1175
1663 16.12.2011 S.I tag emdna-V09 1176 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 1177 Updated source of cross section file for elastic scattering
1665 1178
1666 25.11.2011 M.K tag emdna-V09 1179 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 1180 Correct a typo in previous tag
1668 1181
1669 25.11.2011 M.K tag emdna-V09 1182 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 1183 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 1184 rather than center of mass in DNAMolecularReaction
1672 1185
1673 21.11.2011 M.K tag emdna-V09 1186 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 1187 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 1188 avoid conflicts with ROOT.
1676 Add short class description (comm 1189 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 1190 in JavaDoc style for doxygen use.
1678 1191
1679 21.11.2011 M.K tag emdna-V09 1192 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1193 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1194 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1195 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1196 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1197 when the time steps returned by the time stepper
1685 and the processes are equal 1198 and the processes are equal
1686 Improve verbose 1199 Improve verbose
1687 1200
1688 21.11.2011 M.K tag emdna-V09 1201 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1202 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1203 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1204 Correct verbose in new models & process
1692 1205
1693 18.11.2011 M.K tag emdna-V09 1206 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl << 1207 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1208 in G4DNAChemistryManager
1696 1209
1697 18.11.2011 M.K tag emdna-V09 1210 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1211 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1212 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1213 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1214
1702 15.11.2011 G.Cosmo tag emdna-V09 1215 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1216 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1217 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1218 Windows.
1706 Fixed compilation warning on icc 1219 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1220 G4MolecularDecayTable.cc
1708 1221
1709 10.11.2011 M.K. tag emdna-V09 1222 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1223 Fix a bug in G4DNATransformElectronModel
1711 1224
1712 10.11.2011 M.K. tag emdna-V09 1225 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1226 Clean classes for release
1714 Add comment into source 1227 Add comment into source
1715 Change name of some methods 1228 Change name of some methods
1716 Transform two independent singlet 1229 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1230 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1231 (ITStepMan + DNAChemMan)
1719 1232
1720 10.11.2011 M.K. tag emdna-V09 1233 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1234 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1235 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1236 the chemistryManager.
1724 1237
1725 09.11.2011 M.K. tag emdna-V09 1238 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1239 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1240 in G4TrackListNode.
1728 Simplify and improve the use of d 1241 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1242 Add more convenient methods in userReactionAction
1730 1243
1731 08.11.2011 M.K. tag emdna-V09 1244 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1245 Fix coverity warnings
1733 1246
1734 07.11.2011 M.K. tag emdna-V09 1247 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1248 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1249 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1250 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1251 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1252 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1253 Clean classes for release
1741 1254
1742 03.11.2011 M.K. tag emdna-V09 1255 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1256 Add dna libs in sources.cmake
1744 1257
1745 03.11.2011 M.K. tag emdna-V09 1258 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1259 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1260 Add dna includes in sources.cmake
1748 << 1261
1749 01.11.2011 M.K. tag emdna-V09 1262 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1263 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1264 G4ITTransportation, G4TrackList on Windows
1752 1265
1753 01.11.2011 G.Cosmo 1266 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1267 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1268 updated GNUMakefiles to have it properly defined.
1756 1269
1757 31.10.2011 M.K tag emdna-V09-04-35 1270 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1271 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1272 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives << 1273 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1274 Fix windows compilation errors & warnings
1762 1275
1763 28.10.2011 M.K tag emdna-V09-04-34 1276 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1277 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1278 Plus remove obsolete G4Exception
1766 1279
1767 28.10.2011 M.K tag emdna-V09-04-33 1280 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1281 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1282 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1283 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1284 to models
1772 1285
1773 27.10.2011 M.K tag emdna-V09-04-32 1286 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1287 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1288 coverity errors.
1776 1289
1777 26.10.2011 M.K tag emdna-V09-04-31 1290 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared << 1291 change std::shared_ptr to CLHEP::shared_ptr
1779 1292
1780 26.10.2011 M.K. tag emdna-V09-04-30 1293 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1294 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1295 G4MolecularConfiguration::fManager added
1783 1296
1784 26.10.2011 M.K. tag emdna-V09-04-29 1297 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1298 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1299 Add electron solvatation process & models
1787 Add chemical processes 1300 Add chemical processes
1788 1301
1789 21.10.2011 M.K. tag emdna-V09-04-28 1302 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model << 1303 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1304 emdna-V09-04-24
1792 << 1305
1793 21.10.2011 M.K. tag emdna-V09-04-27 1306 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1307 CMake fixes from emdna-V09-04-24
1795 << 1308
1796 21.10.2011 M.K. tag emdna-V09-04-26 1309 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous << 1310 Bug fixes and new dev from the previous tag
1798 1311
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1312 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1313 Extension of ionisation by HZE proposed by Z. Francis
1801 1314
1802 20.10.2011 M.K. tag emdna-V09-04-24 1315 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1316 Bug fixes and new dev from the previous tag
1804 << 1317
1805 07.10.2011 M.K. tag emdna-V09-04-23 1318 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files << 1319 First tag with "molecules" files
1807 << 1320
1808 07.10.2011 M.K. tag emdna-V09-04-22 1321 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1322 Add molecules+management directory
1810 First tag with "management" files 1323 First tag with "management" files
1811 1324
1812 09.09.2011 G.Folger tag emdna-V09 1325 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer << 1326 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc << 1327 G4DNAMoleculeManager.cc
1815 1328
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1329 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1330 Updated sources.make and CMakeLists.txt
1818 1331
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1332 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1333 Reorganized whole architecture.
1821 1334
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1335 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1336 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1337 if no deexcitation)
1825 1338
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1339 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1340 Changed code (em0006) numbering for G4Exception
1828 1341
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1342 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1343 Switched to new G4Exception syntax
1831 1344
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1345 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1346 Added enhanced debug information in ionisation models
1834 1347
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1348 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1349 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1350
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1351 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1352 Removed obsolete information.
1840 1353
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1354 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1355 Updated deexcitation initialization in ionization models.
1843 1356
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1357 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1358 Coverity warnings removal
1846 1359
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1360 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1361 - Increased energy limits for
1849 G4DNAChargeIncrease 1362 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1363 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1364 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1365 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1366 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade << 1367 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1368 of ionisation classes for Auger e-
1856 1369
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1370 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1371 Further compilation warnings removal
1859 1372
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1373 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1374 Compilation warnings removal
1862 1375
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1376 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1377 added Atomic Deexcitation to Ionisation Models
1865 1378
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1379 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1380 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1381 G4DNADingfelderChargeIncreaseModel.cc.
1869 1382
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1383 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1384 Changed process sub-type numbering.
1872 1385
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1386 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1387 Fixed coverity warnings.
1875 1388
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1389 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1390 Updated all models for handling of variable density.
1878 1391
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1392 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1393 Addition of dependencies to configuration files.
1881 1394
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1395 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1396 Addition of all files.
1884 1397
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1398 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1399 Creation of dna sub-package in electromagnetic category.