| Geant4 Cross Reference |
1 # Category emdna History << 1 =========================================================
2 << 2 Geant4 - an Object-Oriented Toolkit for Simulation in HEP
3 See `CONTRIBUTING.rst` for details of **requir << 3 =========================================================
4 which **must** added in reverse chronological << 4
5 It must **not** be used as a substitute for wr << 5 Category History file
6 << 6 ---------------------
7 ---------------------------------------------- << 7 This file should be used by G4 developers and category coordinators
8 << 8 to briefly summarize all major modifications introduced in the code
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) << 9 and keep track of all category-tags.
10 - missing value in DNA PTB Ionization Structur << 10 It DOES NOT substitute the CVS log-message one should put at every
11 - missing GetMaterial() in DNA PTB Excitation << 11 committal in the CVS repository !
12 << 12
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) << 13 ----------------------------------------------------------
14 - Modified the molecule names of OH, HO2, O in << 14 * Reverse chronological order (last date on top), please *
15 Each molecule configuration has a molecule d << 15 ----------------------------------------------------------*
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with <<
35 of std::function in G4OctreeFinder. <<
36 <<
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) <<
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with <<
51 Added missing declarations for TG4MoleculeSh <<
52 Based on [GitHub PR#69](https://github.com/G <<
53 <<
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) <<
106 - Use G4FindDataDir to access data libraries i <<
107 <<
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) <<
109 - correct fastercode section for dna opt6 <<
110 <<
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) <<
112 - correct scavenger counter for oxygen <<
113 <<
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) <<
115 - Fixed the K shell bug in G4DNARuddIonisation <<
116 <<
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) <<
118 - improved equilibrium processes, introduced G <<
119 <<
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) <<
121 - In navigation classes, removed references to <<
122 which is now deprecated. <<
123 <<
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) <<
125 - Removed references to unused G4GRSSolid and <<
126 <<
127 ## 2023-08-29 (emdna-V11-01-18) <<
128 - Fix minor/obvious Coverity issues <<
129 <<
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) <<
131 - Apply core clang-tidy fixes plus those for <<
132 - Cons/destructor modernization <<
133 - Readability and logic for conditionals/boo <<
134 <<
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) <<
136 - Apply patch from [GitHub PR 58](https://gith <<
137 - Use std::erfc to avoid precision loss <<
138 - Remove unused header <<
139 <<
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) <<
141 - minor correction for DNA material in option6 <<
142 <<
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) <<
144 - use analytical method for DNA material in op <<
145 <<
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 <<
147 - G4DNARuddIonisationExtendedModel - model re- <<
148 threads, applicable for scaled energy interv <<
149 an ion data is not available proton x-sectio <<
150 used, sampling of delta-electron is done usi <<
151 <<
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) <<
153 - Modified DNA cross section file name to new <<
154 <<
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) <<
156 - Add DNA cross section to dna_option6 <<
157 <<
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) <<
159 - Fix Compilation warnings on XCode <<
160 <<
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) <<
162 - correct the initial values of G4DNAEventSche <<
163 <<
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) <<
165 - add time structure (pulsed beam) to water ra <<
166 <<
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) <<
168 - correct KDTree bug <<
169 <<
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) <<
171 - icsd physicslist: deleted unused model, <<
172 - Apdated RegisterModel function with new stru <<
173 - added model data to G4DNAMaterialManager sin <<
174 <<
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) <<
176 - Fixed compilation warning on macOS/XCode for <<
177 in G4DNAVacuumModel::Initialise(). <<
178 <<
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) <<
180 - Introduced G4DNAMaterialManager to manage av <<
181 and keeps DNA cross section data in one thread <<
182 - minor change in G4VDNAModel <<
183 <<
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) <<
185 - reorganize multiple material model of PTB mo <<
186 G4VDNAModel plays like a data layer for multip <<
187 The concrete models are independent of G4DNAMo <<
188 <<
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) <<
190 - replaced string to material index and clean <<
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, <<
192 G4DNAPTBExcitationStructure) - PTB models <<
193 - added material pointer members for each conc <<
194 - removed unused objects (G4DataVector()) <<
195 <<
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) <<
197 - clean G4DNAModelInterface file for the model <<
198 <<
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) <<
200 - fix coverity of G4DNARuddIonisationExtendedM <<
201 (Uninitialized scalar variable) from cand1 ana <<
202 <<
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 <<
204 - G4DNARuddIonisationExtendedModel - fixed com <<
205 radioactive decay module - before this upd <<
206 only 5 ions have data needed for this mode <<
207 model scaling relation to the carbon ion i <<
208 no data; low-energy limit is used now more <<
209 but not killed, because they may have radi <<
210 lines are removed from the class <<
211 <<
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) <<
213 - Fixed more compilation warnings for implicit <<
214 <<
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) <<
216 - delete unused tests in dna (G4DNAProcessTest <<
217 <<
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) <<
219 - Fixed compilation warnings for implicit type <<
220 <<
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 <<
222 - G4DNAUeharaScreenedRutherfordElasticModel - <<
223 low and high energy limit for the model; r <<
224 <<
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) <<
226 - Fix Coverity issues for ref-09 <<
227 <<
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) <<
229 - minor correction of IRT-syn model (chemistry <<
230 after 1 ps. <<
231 <<
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- <<
233 - Add nitrogen models from PTra code <<
234 <<
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) <<
236 - Fixed minor mistake of file name in G4DNARPW <<
237 - Added protection for HighEnergyLimit/LowEner <<
238 G4DNARPWBAExcitationModel <<
239 <<
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) <<
241 - Fixed compilation warnings on Intel/icx comp <<
242 but not used in G4ITNavigator2. <<
243 <<
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) <<
245 - Fix user's report for IRT model. <<
246 If the first IRTSampling won't give any rea <<
247 <<
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) <<
249 - Fix Coverity static analysis for ref-08 <<
250 uninit_member in G4DNAMillerGreenExcitationMo <<
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI <<
252 Use auto & instead of auto : G4ITFinder, G4DN <<
253 <<
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) <<
255 - Resolve dependency inconsistencies : <<
256 dna/management/include/G4ChemicalMoleculeF <<
257 dna/management/include/G4UserMeshAction.hh <<
258 dna/management/include/G4OctreeFinder.hh i <<
259 <<
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) <<
261 - Partially resolve dependency inconsistencies <<
262 - NB: cannot be resolved fully without intro <<
263 G4emdna-man, G4emdna-molman, G4emdna-utils <<
264 <<
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) <<
266 - Define G4CT_MAX_COUNT for changing "compile <<
267 errors on NVHPC compiler. <<
268 <<
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 <<
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo <<
271 cleanup according to the recent G4VEmProce <<
272 headers are moved to source; C++11 keyward <<
273 <<
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) <<
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela <<
276 G4DNACPA100IonisationModel.cc, G4DNAChampion <<
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo <<
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx <<
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis <<
280 G4DNASancheExcitationModel.cc : <<
281 use G4FindDataDir("G4LEDATA") to find datase <<
282 <<
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) <<
284 - correct DNA ion definitions in G4DNARuddIoni <<
285 <<
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) <<
287 - G4Octree : fixed Coverity warning. <<
288 <<
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) <<
290 - update data structure to improve performance <<
291 <<
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) <<
293 - G4ITTransportation: fixed misuse of bitwise <<
294 <<
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) <<
296 - Added missing headers. <<
297 <<
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) <<
299 - change the scavenging filter of the IRT beyo <<
300 <<
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) <<
302 - Add localthread for fUse of G4VMoleculeCount <<
303 <<
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa <<
305 - Incorporation of model based on RPWBA to tra <<
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI <<
307 <<
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) <<
309 - add UserBrownianAction in G4DNABrownianTrans <<
310 G4DNAMolecularDissociation <<
311 - replace G4int by int64_t for width integer t <<
312 - add fResetScavenger in G4SchedulerMessenger <<
313 <<
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) <<
315 - save local instances for recurrent access to <<
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo <<
317 G4DNARuddIonisationModel <<
318 - use G4Pow and G4Log instead of std::pow and <<
319 - inside G4DNARuddIonisationExtendedModel comm <<
320 inside G4DNAGenericIonsManager <<
321 <<
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) <<
323 - Debug the report #2235 which might be relate <<
324 - Clean code <<
325 - Delete G4ITFinder.cc <<
326 <<
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) <<
328 - save local instances for recurrent access to <<
329 G4DNADingfelderChargeDecreaseModel and G4DNADi <<
330 - use G4Pow and G4Log instead of std::pow and <<
331 <<
332 ## 2022-03-18 SI (emdna-V11-00-10) <<
333 - add protection in G4DNACPA100IonisationModel <<
334 <<
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) <<
336 - remove macro commands to control the chemist <<
337 (creating models in G4SchedulerMessenger can m <<
338 - add flag OctreeFinder in IRT_syn's Initializ <<
339 <<
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) <<
341 - add macro commands to control the chemistry <<
342 parameters including the chemical molecules an <<
343 <<
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) <<
345 - optimize IRT-syn model, use reaction radius <<
346 - delete G4VReactionType, G4DNAReactionTypeMan <<
347 G4DNAPartiallyDiffusionControlled <<
348 - delete G4DNAIRT_geomtries <<
349 <<
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) <<
351 - `G4ITTransportation`: Make `PrepareState` mo <<
352 - `G4DNAPolyNucleotideReactionProcess`: <<
353 - Move `PrepareState` and `State` macros int <<
354 - Make `PrepareState` more function-like, ex <<
355 - Move variable `pMoleculeA` under `G4VERBOS <<
356 <<
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) <<
358 - add the condition of water material for the <<
359 warning in G4DNAMolecularDissociation::DecayIt <<
360 <<
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) <<
362 - modify the macro in G4Molecule.cc and G4ITTy <<
363 <<
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) <<
365 - Prefer pointer to `const G4Material` if poss <<
366 <<
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) <<
368 - Remove useless `const_cast` of `G4VSensitive <<
369 <<
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) <<
371 - add G4DNAPolyNucleotideReactionProcess, G4VD <<
372 files for DNA damage applications <<
373 <<
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) <<
375 - Change to new Markdown History format <<
376 <<
377 --- <<
378 <<
379 # History entries prior to 11.0 <<
380 <<
381 8-11-2021, H. Tran, emdna-V10-07-15 <<
382 - corrected Circular dependencies for mesoscop <<
383 - corrected the problem in IRT <<
384 <<
385 4-11-2021, H. Tran, emdna-V10-07-14 <<
386 - define a G4FakeParticleID::fLastValue in the <<
387 delete G4FakeParticleID.cc, <<
388 solve arithmetic problems, <<
389 Added new mesoscopic model for dna chemistry <<
390 <<
391 21-10-2021, W.G.Shin, emdna-V10-07-13 <<
392 - Added a virtual classes for DNA geometry - G <<
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul <<
394 G4ITModelProcessor, G4Sch <<
395 G4DNAMolecularReactionTab <<
396 <<
397 23-09-2021, A. Ribon, emdna-V10-07-12 <<
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit <<
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh <<
400 G4DNAChargeIncrease, G4DNAElectronSolvation, <<
401 G4DNASecondOrderReaction, G4DNAElectronHoleR <<
402 G4DNABrownianTransportation : replaced hardw <<
403 with enum values introduced in the new class <<
404 <<
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 <<
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati <<
407 G4VLEPSModel - updated interfaces to G4Physi <<
408 <<
409 16-07-2021, D. Sakata, emdna-V10-07-10 <<
410 - Fixed initialization error in G4DNAELSEPAEla <<
411 <<
412 28-06-2021, G. Cosmo, emdna-V10-07-09 <<
413 - Fixed compilation error in G4ITMultiNavigato <<
414 enabled. <<
415 <<
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 <<
417 - Added new classes G4DNADiracRMatrixExcitatio <<
418 G4DNAQuinnPlasmonExcitatio <<
419 G4DNARelativisticIonisatio <<
420 G4DNAPlasmonExcitation <<
421 - Modified G4DNAELSEPAElasticModel for gold <<
422 <<
423 9-05-2021, H.Tran, tag emdna-V10-07-07 <<
424 - Add IRT-syn model <<
425 <<
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 <<
427 - Migrate build to modular CMake API <<
428 <<
429 27-04-2021, H.Tran, tag emdna-V10-07-05 <<
430 - G4DNAElectronHoleRecombination: added Octree <<
431 - G4DNABrownianTransportation: modified AlongS <<
432 - added OctreeFinder and IRTUtils <<
433 <<
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 <<
435 - G4DNABornAngle, G4DNARuddAngle - updated pri <<
436 <<
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 <<
438 - Move DNA-related Unit Tests from lowenergy/t <<
439 <<
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 <<
441 - Fixed dependency on g4tools, now moved to ex <<
442 <<
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 <<
444 - G4DNAElectronHoleRecombination <<
445 Dissociation channel of electron-hole recomb <<
446 G4EmDNAChemistry, _option1, _option2, _optio <<
447 - G4DNAWaterDissociationDisplacer <<
448 Added the fragment displacement for new diss <<
449 <<
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 <<
451 - Fix thread contention on mutable data in G4D <<
452 help resolving observed crashes in MT runs. <<
453 Some code cleanup. <<
454 <<
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 <<
456 - G4DNAMolecularMaterial - removed commented l <<
457 - History file fixed <<
458 <<
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 <<
460 - G4DNAMolecularMaterial - attempt to fix nigh <<
461 in chem6 example - do not delete instance of <<
462 <<
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 <<
464 - Added dependency on analysis/g4tools in GNUm <<
465 required after analysis update (analysis-V10 <<
466 <<
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 <<
468 - Fixed coverity warning <<
469 <<
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 <<
471 - Fixed coverity warnings <<
472 - Fix of IRT bug <<
473 (protection for the crash induced by empty re <<
474 <<
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 <<
476 - Add missing G4analysismng module dependency <<
477 <<
478 20-05-20: W.G.Shin emdna-V10-06-05 <<
479 - Revised displacement of OH radicals of B1A1 <<
480 based on momentum conservation in G4DNAWaterDi <<
481 - Added missing History <<
482 <<
483 26-04-20: W.G.Shin emdna-V10-06-04 <<
484 - Fixed coverity test <<
485 <<
486 15-04-20: G.Cosmo emdna-V10-06-03 <<
487 - G4MoleculeDefinition: copy constructor and a <<
488 are not allowed (as for G4ParticleDefinition <<
489 <<
490 19-02-20: W.G.Shin emdna-V10-06-02 <<
491 - Fixed memory issue on G4DNAMolecularReaction <<
492 - Revised headeres of IRT classes <<
493 <<
494 12-02-20: W.G.Shin emdna-V10-06-01 <<
495 - Added protections floating point exception i <<
496 <<
497 10-01-20: W.G.Shin emdna-V10-06-00 <<
498 - Added classes for IRT <<
499 - Added features in management classes for IRT <<
500 G4ITModelProcessor ...) <<
501 - Added features in G4DNAMolecularReactionTabl <<
502 - Added molecules of Plante et al. (2017) (Oxy <<
503 <<
504 15-11-19: G.Cosmo emdna-V10-05-11 <<
505 - Fixed cases of implicit type conversions fro <<
506 <<
507 8-11-19: HT, tag emdna-V10-05-10 <<
508 - Fixed the exception divide by zero of diffus <<
509 G4DNABrownianTransportation::AlongStepGetPhysi <<
510 for the case of static molecules (DNA) (diffus <<
511 <<
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 <<
513 - Enabled G4ItNavigator{1,2} to flag if it enc <<
514 of external physical volume (meant for adapt <<
515 <<
516 19-10-19: WGS, SI, tag emdna-V10-05-08 <<
517 - Added new model G4DNAELSEPAElasticModel <<
518 <<
519 11-10-19: WGS, SI, tag emdna-V10-05-07 <<
520 - G4DNAOneStepThermalizationModel.* : <<
521 added Kreipl and Meesungnoen amorphous ice mod <<
522 - G4DNAWaterDissociationDisplacer* : updated <<
523 <<
524 03-06-2019, MK, tag emdna-V10-05-06 <<
525 - Fix GCC9 warnings <<
526 <<
527 26-03-2019, HT, tag emdna-V10-05-05 <<
528 - Added G4DNAMolecule <<
529 <<
530 10-03-2019, MK, tag emdna-V10-05-04 <<
531 - Fix reaction site issue <<
532 - Chemistry: clarify pointer ownership, clean <<
533 <<
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 <<
535 - Fixed typos in printouts in G4MolecularConfi <<
536 G4VITRestProcess, G4DNAElectronHoleRecombina <<
537 <<
538 18-01-2019, HT, tag emdna-V10-05-02 <<
539 - Transformed the exception into warning in G4 <<
540 <<
541 28-12-2018, MK, tag emdna-V10-05-01 <<
542 DEV-300 : G4DNAChemistryManager clarify pointe <<
543 <<
544 05-01-2019, HT, tag emdna-V10-05-00 <<
545 - moved the checking position of track status <<
546 in G4ITStepProcessor::SetInitialStep() <<
547 16
548 01-09-2018, SI, tag emdna-V10-04-10 17 01-09-2018, SI, tag emdna-V10-04-10
549 renamed tag 18 renamed tag
550 19
551 01-09-2018, SI, tag emdna-v10-04-09 20 01-09-2018, SI, tag emdna-v10-04-09
552 - bugzilla 2084 21 - bugzilla 2084
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id 22 https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2084
554 23
555 30-07-2018, SI, tag emdna-V10-04-08 24 30-07-2018, SI, tag emdna-V10-04-08
556 - included upper energy limit of models (2) 25 - included upper energy limit of models (2)
557 26
558 29-07-2018, SI, tag emdna-V10-04-07 27 29-07-2018, SI, tag emdna-V10-04-07
559 - included upper energy limit of models 28 - included upper energy limit of models
560 29
561 01-07-2018, SI, tag emdna-V10-04-06 30 01-07-2018, SI, tag emdna-V10-04-06
562 - added protection in Auger emission 31 - added protection in Auger emission
563 32
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 33 30-06-2018, MS, ZF, SI tag emdna-V10-04-05
565 - updated Si mass in G4DNAGenericIonsManager 34 - updated Si mass in G4DNAGenericIonsManager
566 35
567 22-06-2018, SI tag emdna-V10-04-04 36 22-06-2018, SI tag emdna-V10-04-04
568 - fixed warnings in lepts models 37 - fixed warnings in lepts models
569 38
570 14-05-2018, SI tag emdna-V10-04-03 39 14-05-2018, SI tag emdna-V10-04-03
571 - chemistry update by Mathieu 40 - chemistry update by Mathieu
572 41
573 01-05-2018, SI tag emdna-V10-04-02 42 01-05-2018, SI tag emdna-V10-04-02
574 - chemistry update by Mathieu 43 - chemistry update by Mathieu
575 44
576 09-02-2018, M.Asai tag emdna-V10-04-01 45 09-02-2018, M.Asai tag emdna-V10-04-01
577 - G4DNAMolecularMaterial.cc : 46 - G4DNAMolecularMaterial.cc :
578 GetDensityTableFor() and GetNumMolPerVolTabl 47 GetDensityTableFor() and GetNumMolPerVolTableFor() methods are accepted
579 at G4State_Init rather than G4State_Idle. 48 at G4State_Init rather than G4State_Idle.
580 - Co-works with run-V10-04-01 and global-V10-0 49 - Co-works with run-V10-04-01 and global-V10-04-01.
581 50
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 51 21-12-2017, G.Cosmo tag emdna-V10-04-00
583 - Fixed self-consistency in headers (missing # 52 - Fixed self-consistency in headers (missing #include) in G4IosFlagsSaver,
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff 53 G4KDNode, G4MoleculeIterator and G4LEPTSDiffXS.
585 Fixed spurious definition of G4IT namespace 54 Fixed spurious definition of G4IT namespace in G4ITMultiNavigator header.
586 Thanks to Raphael Isemann for reporting thes 55 Thanks to Raphael Isemann for reporting these.
587 56
588 01-11-2017, MK tag emdna-V10-03-30 57 01-11-2017, MK tag emdna-V10-03-30
589 - remove models/test directory 58 - remove models/test directory
590 59
591 31-10-2017, JA ( tag missing ) 60 31-10-2017, JA ( tag missing )
592 - G4KDNode.hh: Add missing included file - nee 61 - G4KDNode.hh: Add missing included file - needed in test
593 62
594 16-08-2017, SI tag emdna-V10-03-28 63 16-08-2017, SI tag emdna-V10-03-28
595 - updated variable types in models 64 - updated variable types in models
596 65
597 10-08-2017, SI tag emdna-V10-03-27 66 10-08-2017, SI tag emdna-V10-03-27
598 - test 67 - test
599 68
600 10-08-2017, SI tag emdna-V10-03-26 69 10-08-2017, SI tag emdna-V10-03-26
601 - same as previous 70 - same as previous
602 71
603 09-08-2017, SI tag emdna-V10-03-25 72 09-08-2017, SI tag emdna-V10-03-25
604 - same as previous 73 - same as previous
605 74
606 09-08-2017, SI tag emdna-V10-03-24 75 09-08-2017, SI tag emdna-V10-03-24
607 - G4DNAEmfietzoglouIonisationModel: added prot 76 - G4DNAEmfietzoglouIonisationModel: added protection for out of bound access
608 77
609 03-08-2017, VI tag emdna-V10-03-23 78 03-08-2017, VI tag emdna-V10-03-23
610 - G4DNAExcitation, G4DNAIonisation - make cohe 79 - G4DNAExcitation, G4DNAIonisation - make coherent model initialisation
611 80
612 28-07-2017, SI, tag emdna-V10-03-22 81 28-07-2017, SI, tag emdna-V10-03-22
613 - added stationary mode flag to CPA100 ionisat 82 - added stationary mode flag to CPA100 ionisation.
614 83
615 04-07-2017, SI, tag emdna-V10-03-21 84 04-07-2017, SI, tag emdna-V10-03-21
616 - added tagging of atom. deexc. products in io 85 - added tagging of atom. deexc. products in ionisation models.
617 86
618 31-05-2017, SM, tag emdna-V10-03-20 87 31-05-2017, SM, tag emdna-V10-03-20
619 - Correct windows issues with path of diff. CS 88 - Correct windows issues with path of diff. CS data file.
620 89
621 31-05-2017, SI, tag emdna-V10-03-19 90 31-05-2017, SI, tag emdna-V10-03-19
622 - roll-back (Windows issues with previous tag) 91 - roll-back (Windows issues with previous tag)
623 92
624 24-05-2017, SI, tag emdna-V10-03-18 93 24-05-2017, SI, tag emdna-V10-03-18
625 - added tagging of atom. deexc. products in io 94 - added tagging of atom. deexc. products in ionisation models.
626 95
627 11-05-2017, VI tag emdna-V10-03-17 96 11-05-2017, VI tag emdna-V10-03-17
628 - fix for gcc 7.1 warnings in G4DNACrossSectio << 97 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
629 98
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 99 10-05-2017, NL, MK, SI, tag emdna-V10-03-16
631 - fix for gcc 7.1 warnings in G4DNACrossSectio << 100 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
632 101
633 03-05-2017, SM, tag emdna-V10-03-15 102 03-05-2017, SM, tag emdna-V10-03-15
634 - add the new G4DNADummyModel and allow the co << 103 - add the new G4DNADummyModel and allow the combination of G4VEmModel and G4VDNAModel in G4DNAModelInterface.
635 104
636 27-04-2017, SM, tag emdna-V10-03-14 105 27-04-2017, SM, tag emdna-V10-03-14
637 - correct small typo mistakes. 106 - correct small typo mistakes.
638 107
639 27-04-2017, SM, tag emdna-V10-03-13 108 27-04-2017, SM, tag emdna-V10-03-13
640 - update Models/G4DNAModelInterface to correct 109 - update Models/G4DNAModelInterface to correctly use G4DNAMolecularMaterial
641 110
642 10-03-2017, MK, tag emdna-V10-03-12 111 10-03-2017, MK, tag emdna-V10-03-12
643 - update utils/GNUmakefile 112 - update utils/GNUmakefile
644 113
645 13-02-2017, MK, tag emdna-V10-03-11 114 13-02-2017, MK, tag emdna-V10-03-11
646 - G4DNAMolecularMaterial: update doxygen doc 115 - G4DNAMolecularMaterial: update doxygen doc
647 116
648 13-02-2017, MK, tag emdna-V10-03-10 117 13-02-2017, MK, tag emdna-V10-03-10
649 - G4DNAMolecularMaterial: << 118 - G4DNAMolecularMaterial:
650 remove newly introduced methods, add fatal e 119 remove newly introduced methods, add fatal exception if used
651 add doxygen documentation 120 add doxygen documentation
652 121
653 10-02-2017, MK, tag emdna-V10-03-09 122 10-02-2017, MK, tag emdna-V10-03-09
654 - Introducing G4PhysChemIO 123 - Introducing G4PhysChemIO
655 - Move call to G4TrackList::Pop(track) from G4 124 - Move call to G4TrackList::Pop(track) from G4ITTrackingManager
656 to G4ITTrackHolder. And make sure track stat 125 to G4ITTrackHolder. And make sure track status is set to fStopAndKill
657 when G4ITTrackHolder::PushToKill is called. 126 when G4ITTrackHolder::PushToKill is called.
658 127
659 09-02-2017, MK, tag emdna-V10-03-08 128 09-02-2017, MK, tag emdna-V10-03-08
660 - G4KDNode.hh: remove unused G4ThreeVector hea 129 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation 130 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t 131 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization 132 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K 133 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665 134
666 24-01-2017, SM, tag emdna-V10-03-07 135 24-01-2017, SM, tag emdna-V10-03-07
667 - add a ifdef to remove a warning (windows onl 136 - add a ifdef to remove a warning (windows only) related to the use of several levels of map.
668 137
669 23-01-2017, SM, tag emdna-V10-03-06 138 23-01-2017, SM, tag emdna-V10-03-06
670 - add missing G4DNAModelInterface files (.hh a 139 - add missing G4DNAModelInterface files (.hh and .cc) to the source.cmake
671 140
672 23-01-2017, SM CV, tag emdna-V10-03-05 141 23-01-2017, SM CV, tag emdna-V10-03-05
673 - add new G4DNAPTB* classes and the structure 142 - add new G4DNAPTB* classes and the structure of the new material management system
674 143
675 14-01-2017, MK, tag emdna-V10-02-37 144 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingMan 145 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction 146 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Schedule << 147 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679 148
680 28-12-2016, SI, tag emdna-V10-03-04 149 28-12-2016, SI, tag emdna-V10-03-04
681 - extended upper energy limit of protons for << 150 - extended upper energy limit of protons for
682 G4DNARuddIonisationExtendedModel 151 G4DNARuddIonisationExtendedModel
683 152
684 27-12-2016, SI, tag emdna-V10-03-03 153 27-12-2016, SI, tag emdna-V10-03-03
685 - updated references of CPA100 classes 154 - updated references of CPA100 classes
686 155
687 23-12-2016, SI, tag emdna-V10-03-02 156 23-12-2016, SI, tag emdna-V10-03-02
688 - updated sources.cmake 157 - updated sources.cmake
689 158
690 23-12-2016, SI, tag emdna-V10-03-01 159 23-12-2016, SI, tag emdna-V10-03-01
691 - commit of first CPA100 classes, part 2 160 - commit of first CPA100 classes, part 2
692 161
693 21-12-2016, SI, tag emdna-V10-03-00 162 21-12-2016, SI, tag emdna-V10-03-00
694 - commit of first CPA100 classes 163 - commit of first CPA100 classes
695 164
696 27-11-2016, MK, tag emdna-V10-02-36 165 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 166 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 167 - G4DNADamages -> G4DNADamage
699 168
700 17-11-2016, MK, tag emdna-V10-02-35 169 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 170 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 171
703 16-11-2016, MK, tag emdna-V10-02-34 172 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat << 173 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 174 displacement types can be thread shared
706 - G4TrackState: Move implementation of static << 175 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 176 G4VTrackStateID::Create() to cc file - windows crash
708 177
709 15-11-2016, MK, tag emdna-V10-02-33 178 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 179 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 180
712 14-11-2016, MK, tag emdna-V10-02-32 181 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t << 182 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 183 windows platforms
715 184
716 14-11-2016, MK, tag emdna-V10-02-31 185 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: << 186 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 187 tag init constexpr factor with number rather than expression
719 188
720 14-11-2016, MK, tag emdna-V10-02-30 189 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 190 - Use CLHEP::pi instead of M_PI
722 191
723 14-11-2016, MK, tag emdna-V10-02-29 192 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 193 - Correct bracket enclosing
725 194
726 14-11-2016, MK, tag emdna-V10-02-28 195 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 196 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 197 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 198 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 199 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 200 - Adds and use G4CTCounter
732 201
733 02-11-2016, MK, tag emdna-V10-02-27 202 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom << 203 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 204 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo << 205 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety << 206 computeStep & computeSafety
738 207
739 07-08-2016, SI, tag emdna-V10-02-26 208 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 209 - added stationnary mode to sub-excitation electron processes
741 210
742 23-06-2016, MK 211 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 212 - G4Scheduler: move G4IosFlagsSaver to Process()
744 213
745 3-06-2016, MK, tag emdna-V10-02-25 214 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 215 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 216 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 217 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 218
750 3-06-2016, MK, tag emdna-V10-02-24 219 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 220 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 221 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 222 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 223 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 224 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 225 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc << 226 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 227 model used for another part than e-
759 228
760 1-06-2016, MK, tag emdna-V10-02-23 229 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 230 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 231 logic for interface with physics models
763 232
764 31-05-2016, MK, tag emdna-V10-02-22 233 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 234 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 235
767 28-05-2016, MK, tag emdna-V10-02-21 236 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 237 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 238 one of the previous tags
770 239
771 19-05-2016, MK, tag emdna-V10-02-20 240 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 241 - G4ITNavigator: remove warnings on gcc6.1
773 242
774 17-05-2016, MK, tag emdna-V10-02-19 243 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 244 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 245 correct model and process names for solvation
777 246
778 12-05-2016, MK, tag emdna-V10-02-18 247 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: << 248 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 249 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne << 250 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 251 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 252 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 253 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 254 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 255 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim << 256 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 257 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 258 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 259 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 260 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 261 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 262 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 263 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 264 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 265 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 266 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 267 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 268 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 269 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 270 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 271 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv << 272 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 273 created; otherwise, the primary electron is killed
805 274
806 30-04-2016, MK, tag emdna-V10-02-17 275 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 276 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 277
809 30-04-2016, MK, tag emdna-V10-02-16 278 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 279 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p << 280 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 281 unregistered molecule definition
813 282
814 22-04-2016, MK, tag emdna-V10-02-15 283 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 284 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 285 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 286
818 22-04-2016, MK, tag emdna-V10-02-14 287 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit << 288 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 289 remove usage of internal energy boundaries
821 290
822 19-03-2016, SI, tag emdna-V10-02-13 291 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 292 - added nrj extensibility to SR and USR models
824 293
825 11-03-2016, SI, tag emdna-V10-02-12 294 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 295 -roll back to files in emdna-V10-02-06
827 296
828 10-03-2016, SI, tag emdna-V10-02-11 297 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 298 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 299 and G4DNAScreenedRutherfordElasticModel
831 300
832 10-03-2016, SI, tag emdna-V10-02-10 301 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 302 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 303
835 07-03-2016, SI, tag emdna-V10-02-09 304 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 305 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 306 of G4DNAUeharaScreenedRutherfordElasticModel
838 307
839 06-03-2016, SI, tag emdna-V10-02-08 308 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 309 -removed useless G4Pow declaration
841 310
842 04-03-2016, SI, tag emdna-V10-02-07 311 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 312 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 313 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 314
846 02-03-2016, SI, tag emdna-V10-02-06 315 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 316 -replaced std::exp by G4Exp
848 317
849 02-03-2016, SI, tag emdna-V10-02-05 318 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 319 -replaced std::exp by G4Exp
851 320
852 02-03-2016, SI, tag emdna-V10-02-04 321 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 322 -replaced std::exp by G4Exp
854 323
855 01-03-2016, SI, tag emdna-V10-02-03 324 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 325 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 326 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 327 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 328 by S. Okada (KEK, JP)
860 329
861 17-02-2016, MK, tag emdna-V10-02-02 330 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 331 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 332
864 16-12-2015, SI, tag emdna-V10-02-01 333 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: << 334 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 335 added protection on energy for interpolation method change
867 336
868 16-12-2015, SI, tag emdna-V10-02-00 337 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add << 338 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 339 energy
871 340
872 13-11-2015, MK, tag emdna-V10-01-55 341 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 342 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 343 file
875 344
876 10-11-2015, MK, tag emdna-V10-01-54 345 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 346 * remove unused variables
878 347
879 10-11-2015, MK, tag emdna-V10-01-53 348 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 349 * Coverity fixes
881 350
882 06-11-2015, MK, tag emdna-V10-01-52 351 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 352 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 353
885 06-11-2015, MK, tag emdna-V10-01-51 354 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 355 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 356 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 357
889 06-11-2015, MK, tag emdna-V10-01-50 358 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 359 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 360 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 361 * Add G4ITStepProcessorState_Lock.hh
893 362
894 06-11-2015, MK, tag emdna-V10-01-49 363 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 364 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 365 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 366 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 367 but in the source file - causing crashes on windows
899 368
900 04-11-2015, MK, tag emdna-V10-01-48 369 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 370 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 371 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 372 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 373 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 374 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 375 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 376 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 377 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 378 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using << 379 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 380 all dissociation products have been defined (they will just not be taken
912 into account) 381 into account)
913 * G4DNAMolecularReactionTable: delete reaction 382 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 383
915 03-11-2015, MK, tag emdna-V10-01-47 384 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 385 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac << 386 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 387 the call
919 388
920 03-11-2015, MK, tag emdna-V10-01-46 389 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 390 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 391 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 392 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 393 (causing navigator complains)
925 << 394
926 03-11-2015, MK, tag emdna-V10-01-45 395 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 396 * G4Serialize: Add definition in header for G4String
928 397
929 02-11-2015, MK, tag emdna-V10-01-44 398 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 399 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 400 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 401 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 402 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon << 403 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 404 -> G4MolecularConfMan is taking care of this
936 << 405
937 30-10-2015, MK, tag emdna-V10-01-43 406 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter << 407 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 408 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 409 * Unit tests corrected
941 * G4VITDiscreteProcess added 410 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 411 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 412 * Intermediate update for 10.2 release
944 << 413
945 27-10-2015, MK, tag emdna-V10-01-42 414 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 415 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 << 416
948 26-10-2015, MK, tag emdna-V10-01-41 417 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 418 * Sanche model: try to solve std::vector out of bounds
950 419
951 23-10-2015, MK, tag emdna-V10-01-40 420 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 421 * remove all CLHEP::shared_ptr usage
953 << 422
954 23-10-2015, CV, SM, tag emdna-V10-01-39 423 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel << 424 * Addded base class G4VDNAPTBModel
956 425
957 28-09-2015, SI, tag emdna-V10-01-38 426 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 427 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 428
960 19-09-2015, MK, tag emdna-V10-01-37 429 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 430 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 431 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 432
964 17-09-2015, MK, tag emdna-V10-01-36 433 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 434 * G4MoleculeGun: Remove compilation warnings
966 435
967 04-09-2015 MK, tag emdna-V10-01-35 436 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 437 * Fix G4MoleculeGun compilation errors
969 438
970 03-09-2015 SI, tag emdna-V10-01-34 439 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 440 * Added stationary regime to all inelastic models
972 441
973 19-08-2015, MK 442 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 443 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 444 - compatible with both Smoluchowski & Gillespie models
976 445
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 446 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 447 * Added easier handling of cumulative proba. in SR elastic models
979 448
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 449 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 450 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 451 declaration of G4MoleculeShoot.
983 452
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 453 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 454 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 455 declaration of G4MoleculeShootMessenger.
987 456
988 12-08-2015, MK, tag emdna-V10-01-29 457 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 458 * Add G4Serialize in the build tree temporarily
990 459
991 12-08-2015, MK, tag emdna-V10-01-28 460 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 461 * G4Serialize added
993 462
994 12-08-2015, MK 463 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 464 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 465
997 24-07-2015, MK 466 24-07-2015, MK
998 - G4MolecularReactionTable 467 - G4MolecularReactionTable
999 * Add get methods 468 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 469 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 470 * Molecule gun : place randomly in a box
1002 471
1003 15-07-2015, MK 472 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA << 473 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 474 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 475 * processes & models initialisation again
1007 476
1008 15-07-2015, MK, tag emdna-V10-01-26 477 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 478 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 479 * add macro to prevent warnings in non-verbose mode
1011 480
1012 11-07-2015, MK, tag emdna-V10-01-25 481 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 482 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 483 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 484
1016 10-07-2015, MK, tag emdna-V10-01-24 485 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 486 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 487 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 488 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 489 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 490
1022 08-07-2015, MK, tag emdna-V10-01-23 491 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 492 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 493 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 494 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose << 495 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 << 496 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 497 - G4MoleculeDefinition:
1029 ::SetFormatedName added 498 ::SetFormatedName added
1030 ::NewConfiguration methods added 499 ::NewConfiguration methods added
1031 ::NewConfiguration added 500 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 501 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 502 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 503 ::Finalize added
1035 - G4MolecularConfiguration: << 504 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 505 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 506 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 507 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec << 508 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula << 509 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 510 than molecule models
1042 - G4Molecule add constructor where only G4Mol 511 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 512 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 513 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 514 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 515 - G4DNAElectronHoleRecombination added
1047 516
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 517 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c << 518 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 519 fasterCode usage on shell selection.
1051 520
1052 26-06-2015, MK 521 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to << 522 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 523 warning message description
1055 524
1056 16-06-205, MK 525 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 526 - Add G4Scheduler::GetGun()
1058 527
1059 16-06-2015, MK, tag emdna-V10-01-21 528 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 529 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 530 - G4DNAIonElasticModel: clean and fix double free
1062 531
1063 12-06-2015, MK, tag emdna-V10-01-20 532 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 533 - remove virtual keyword from G4IT::GetPosition()
1065 534
1066 04-06-2015, MK 535 04-06-2015, MK
1067 - just cosmetics 536 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 537 - remove virtual keyword from G4IT::operator[]
1069 538
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 539 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 540 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 541 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 542 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 543 - Fully qualify std::string elsewhere as needed to adjust
1075 544
1076 22-05-2015, John Allison, tag emdna-V10-01-18 545 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 546 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 547 "G4Threading::IsMasterThread()".
1079 548
1080 17-05-2015, MK, tag emdna-V10-01-17 549 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 550 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 551 - Correct sources.cmake
1083 - Born headears: includes both model versions << 552 - Born headears: includes both model versions when proxy header is included
1084 553
1085 16-05-2015, MK, tag emdna-V10-01-16 554 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 555 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 556 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 557 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 558 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 559 - Add G4DNABornExcitationModel2 (temporary)
1091 560
1092 15-05-2015, MK, tag emdna-V10-01-15 561 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 562 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 563
1095 14-05-2015, MK, tag emdna-V10-01-14 564 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 565 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 566
1098 14-05-2015, MK, tag emdna-V10-01-13 567 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 568 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 569 - G4ITReaction: try to solve compilation error
1101 570
1102 12-05-2015, MK, tag emdna-V10-01-12 571 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 572 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 573
1105 12-05-2015, MK, tag emdna-V10-01-11 574 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 575 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 576
1108 11-05-2015, MK, tag emdna-V10-01-10 577 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 578 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 579 +Add GetPartialCrossSection
1111 +Code cleaning 580 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 581 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 582 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 583 - G4DNAChemistryManager::GetValue(...) added
1115 584
1116 02-05-2015, MK 585 02-05-2015, MK
1117 - Update G4TrackState & related classes 586 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: << 587 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian << 588 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 589 +comment useless method
1121 - G4Scheduler: << 590 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS << 591 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime << 592 +remove fTmpEndTime
1124 +Add CanICarryOn 593 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 594 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 595
1127 18-03-2015, MK, tag emdna-V10-01-08 596 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 597 - Same as before, just add the missing History file
1129 598
1130 18-03-2015, MK, tag emdna-V10-01-07 599 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 600 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 601 instead of a reference
1133 602
1134 12-02-2015, MK, tag emdna-V10-01-06 603 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 604 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 605 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi << 606 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 607
1139 11-02-2015, MK, tag emdna-V10-01-05 608 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 609 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 610 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 611 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 612
1144 16-01-2015, SI, tag emdna-V10-01-04 613 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 614 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 615
1147 14-12-2014, MK, tag emdna-V10-01-03 616 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 617 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval << 618 - ScreenRutherfordElastic: correct retrieval of water density
1150 619
1151 13-12-2014, SI, tag emdna-V10-01-02 620 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 621 - Added elastic model by H. Tran.
1153 622
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 623 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 624 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 625 to allow for compilation on Linux/clang-3.5.
1157 626
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 627 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 628 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 629 include missing files:
1161 G4ITTransportationManager.icc 630 G4ITTransportationManager.icc
1162 G4KDNode.icc 631 G4KDNode.icc
1163 G4KDTree.icc 632 G4KDTree.icc
1164 G4MoleculeFinder.hh 633 G4MoleculeFinder.hh
1165 634
1166 01-12-2014, MK, tag emdna-V10-00-63 635 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 636 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 637 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 638 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 639 when the particle has reached a boundary
1171 640
1172 28-11-2014, MK, tag emdna-V10-00-62 641 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 642 - Retag
1174 643
1175 28-11-2014, MK, tag emdna-V10-00-61 644 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 645 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 646 - Fix Brownian navigation
1178 - Some fixes related to scheduler 647 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 648 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 649 - Enhance comments
1181 650
1182 24-11-2014, MK, tag emdna-V10-00-60 651 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 652 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 653
1185 24-11-2014, MK, tag emdna-V10-00-59 654 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 655 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 656 - Remove useless verbose
1188 - Try to compile on all platforms 657 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 658 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 659 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 660 Just registering constructor is enough to initialized the chemistry
1192 661
1193 24-11-2014, MK, tag emdna-V10-00-58 662 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 663 - G4FastList: remove all friend declarations
1195 664
1196 22-11-2014, MK, tag emdna-V10-00-57 665 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 666 - Another attempt to compile G4FastList on all platforms
1198 667
1199 22-11-2014, MK, tag emdna-V10-00-56 668 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 669 - Attempt to compile G4FastList on all platforms
1201 670
1202 21-11-2014, MK, tag emdna-V10-00-55 671 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 672 - Attempt to compile G4FastList with clang
1204 673
1205 21-11-2014, MK, tag emdna-V10-00-54 674 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 675 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou << 676 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 677 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 678 - Update G4ITNavigator2 to the G4Navigator of John
1210 679
1211 21-11-2014, MK, tag emdna-V10-00-53 680 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b << 681 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 682 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 683 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time << 684 is false by default --> uses the random time computation for crossing
1216 boundaries 685 boundaries
1217 686
1218 20-11-2014, SI, tag emdna-V10-00-52 687 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 688 - Improved error message for missing data in PW elastic model
1220 689
1221 08-11-2014, MK, tag emdna-V10-00-51 690 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 691 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 692 when the asked item is not found
1224 693
1225 03-11-2014 MK, tag emdna-V10-00-50 694 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 695 - correct track creation by G4MoleculeGunMessenger
1227 696
1228 03-11-2014 MK, tag emdna-V10-00-49 697 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 698 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 699 - Correct a bug in G4MoleculeGun
1231 700
1232 28-10-2014 PA, tag emdna-V10-00-48 701 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 702 - correct compilation warnings
1234 703
1235 28-10-2014 PA, tag emdna-V10-00-47 704 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 705 - correct compilation warnings
1237 706
1238 28-10-2014 PA, tag emdna-V10-00-46 707 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 708 - correction in sources.cmake
1240 709
1241 28-10-2014 PA, tag emdna-V10-00-45 710 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 711 - retag to add LEPTS
1243 712
1244 28-10-2014 PA, tag emdna-V10-00-44 713 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 714 - add LEPTS
1246 715
1247 25-10-2014 MK, tag emdna-V10-00-43 716 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 717 - remove useless G4VITScheduler
1249 718
1250 25-10-2014 MK, tag emdna-V10-00-42 719 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 720 - correct warnings
1252 721
1253 24-10-2014 MK, tag emdna-V10-00-41 722 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 723 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 724 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 725 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 726 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 727 - G4ITFinder added
1259 - G4VITTrackHolder added 728 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 729 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 730 - code cleaned + useless classes removed
1262 731
1263 24-10-2014 MK, tag emdna-V10-00-40 732 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 733 - G4ITStepManager: remove verbose at closure time
1265 734
1266 21-10-2014 MK, tag emdna-V10-00-39 735 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 736 - try to solve crash at closure time
1268 737
1269 21-10-2014 MK, tag emdna-V10-00-38 738 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 739 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 740 table when deleted
1272 - update disclaimer 741 - update disclaimer
1273 742
1274 17-10-2014 MK, tag emdna-V10-00-37 743 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 744 - clean code
1276 - G4ITStepManager: one can ask why simulation 745 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 746 - remove useless verbose
1278 747
1279 17-10-2014 MK, tag emdna-V10-00-36 748 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 749 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 750 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 751 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 752
1284 10-10-2014 MK, tag emdna-V10-00-35 753 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 754 Avoid use of std::map at the application level in TimeStepAction
1286 755
1287 07-10-2014 MK, tag emdna-V10-00-34 756 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 757 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 758 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 759 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 760
1292 07-10-2014 MK, tag emdna-V10-00-33 761 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 762 Initialize G4ITStepManager in G4DNAChemistryManager
1294 763
1295 17-09-2014 MK, tag emdna-V10-00-32 764 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 765 Add G4ITStepManager + messenger
1297 Tag before architecture change 766 Tag before architecture change
1298 767
1299 12-07-2014 SI, tag emdna-V10-00-31 768 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 769 Removed obsolete class for electron excitation
1301 770
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 771 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 772 - Get rid of obsolete 'register' keyword in code.
1304 773
1305 05-06-2014 SI, tag emdna-V10-00-29 774 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 775 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D << 776 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 777 G4GenericIon usage
1309 - requires G4EMLOW6.39 778 - requires G4EMLOW6.39
1310 779
1311 04-06-2014 MK, tag emdna-V10-00-28 780 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 781 Remove directory management/include/impl
1313 Prepare for release 782 Prepare for release
1314 783
1315 04-06-2014 MK, tag emdna-V10-00-27 784 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 785 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 786 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 787 Avoid usage of molecule iterators as pointers
1319 788
1320 03-06-2014 SI, tag emdna-V10-00-26 789 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 790 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 791
1323 28-05-2014 VI, SI tag emdna-V10-00-25 792 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 793 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 794 Ionisation models switch to use angular generator
1326 interface 795 interface
1327 796
1328 12.05.2014 MK, tag emdna-V10-00-24 797 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 798 Try to remove warnings 4
1330 799
1331 12.05.2014 MK, tag emdna-V10-00-23 800 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 801 Try to remove warnings 3
1333 802
1334 12.05.2014 MK, tag emdna-V10-00-22 803 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 804 Try to remove warnings 2
1336 805
1337 12.05.2014 MK, tag emdna-V10-00-21 806 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 807 Try to remove warnings
1339 808
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 809 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx << 810 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 811 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 812 G4EMLOW6.38 needed
1344 813
1345 07-04-2014 SI tag emdna-V10-00-19 814 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 815 Changed faster method interpolation in
1347 G4DNABornIonisationModel << 816 G4DNABornIonisationModel
1348 817
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 818 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 819 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 820 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 821 Corrected order of inclusion of some headers and use of <>/"".
1353 822
1354 04-04-2014 MK tag emdna-V10-00-17 823 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 824 Try to solve warnings when G4VERBOSE is off
1356 825
1357 02-04-2014 MK tag emdna-V10 826 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 827 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 828
1360 02-04-2014 MK tag emdna-V10 829 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 830 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 831
1363 02-04-2014 MK tag emdna-V10 832 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 833 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 834 -> this part is withdrawn for now
1366 835
1367 02-04-2014 MK tag emdna-V10 836 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 837 - version 2 : try fixing the build error on mac
1369 838
1370 02-04-2014 MK tag emdna-V10 839 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 840 - version 1 : try to fix build errors and warnings on mac
1372 841
1373 02-04-2014 MK tag emdna-V10 842 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 843 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 844 (G4MemStat & G4MolecularConfiguration)
1376 845
1377 02-04-2014 MK tag emdna-V10 846 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 847 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 848 (problem coming from having as a friend class a template argument)
1380 849
1381 02-04-2014 MK tag emdna-V10 850 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla << 851 - try to fix build error on windows platform
1383 852
1384 01-04-2014 MK tag emdna-V10 853 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 854 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 855 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 856
1388 01-04-2014 MK tag emdna-V10 857 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 858 - reset CMakeLists.txt
1390 859
1391 01-04-2014 MK tag emdna-V10 860 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 861 - update chemistry
1393 862
1394 01-04-2014 SI tag emdna-V10-00-05 863 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 864 - Modified calculation of secondary kinetic for fast code
1396 865
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 866 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 867 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 868 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 869 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 870
1402 25-03-2014 VS, SI tag emdna-V10-00-03 871 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 872 - Added several clear() to vectors for MT
1404 873
1405 17-03-2014 SI tag emdna-V10-00-02 874 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc << 875 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 876 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 877 to be used with G4EMLOW6.36
1409 878
1410 12-12-2013 M.K tag emdna-V10-00-01 879 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 880 - G4DNAMolecularMaterial: Remove unused variable
1412 881
1413 12-12-2013 M.K tag emdna-V10-00-00 882 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to << 883 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 884 a model is not created at initialisation time
1416 885
1417 21-11-2013 V.I. tag emdna-V09-06-22 886 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 887 - G4ITStepProcessor2 - removed obsolete unused header
1419 888
1420 01-11-2013 M.K tag emdna-V09-06-21 889 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 890 - Correct incorrect singleton check introduced in previous tag
1422 891
1423 01-11-2013 M.K tag emdna-V09-06-20 892 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 893 - Prepare for release bis
1425 894
1426 01-11-2013 M.K tag emdna-V09-06-19 895 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 896 - Prepare for release
1428 897
1429 10-10-2013 M.K. tag emdna-V09-06-18 898 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 899 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 900
1432 06-10-2013 M.K. tag emdna-V09-06-17 901 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 902 - Same as before once again
1434 903
1435 03-10-2013 M.K. tag emdna-V09-06-16 904 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 905 - Same as before
1437 906
1438 03-10-2013 M.K. tag emdna-V09-06-15 907 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 908 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t << 909 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 910 by the user - stage 1
1442 911
1443 14-09-2013 M.Asai tag emdna-V09-06-14 912 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 913 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 914 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 915 with virtual keyword in G4VITProcess.
1447 916
1448 12-09-2013 M.K. tag emdna-V09-06-13 917 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 918 Correction of an inadvertent modification introduced in previous tag
1450 919
1451 12-09-2013 M.K. tag emdna-V09-06-12 920 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 921 Correct bound checks in G4ITManager.icc
1453 922
1454 16-08-2013 S.I. tag emdna-V09-06-11 923 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 924 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 925
1457 16-08-2013 S.I. tag emdna-V09-06-10 926 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 927 Added G4DNAIons
1459 928
1460 25-06-2013 M.K. tag emdna-V09-06-09 929 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 930 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet << 931 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 932 auto_ptr according to c++ std version
1464 933
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 934 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 935 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 936 for problem accidentally introduced in previous tag.
1468 937
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 938 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 939 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 940 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 941 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 942 compilation on Windows.
1474 943
1475 06-06-2013 S.I. tag emdna-V09-06- 944 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 945 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 946 Requires G4EMLOW version 6.33
1478 947
1479 25-05-2013 M.K. tag emdna-V09-06- 948 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 949 *Fix warning compilation in G4KDMap for specific gcc version
1481 950
1482 24-05-2013 M.K. tag emdna-V09-06- 951 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi << 952 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 953 but still not in usage
1485 954
1486 23-05-2013 M.K. tag emdna-V09-06- 955 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 956 * G4KDMap : try fix error on std:ceil call on windows
1488 957
1489 23-V09-06-03-05-2013 M.K. tag emd 958 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 959 * G4KDMap : used deque::iterator
1491 960
1492 961
1493 22-05-2013 M.K. tag emdna-V09-06- 962 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 963 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 964 * G4KDMap : pop out elements from map
1496 965
1497 22-05-2013 M.K. tag emdna-V09-06-00 966 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global << 967 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager << 968 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 969 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 970 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 971 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 972 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali << 973 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes << 974 intialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI << 975 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 976
1508 12-11-2012 M.K tag emdna-V09-05- 977 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 978 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 979 coverity warnings (rev 64993)
1511 980
1512 06-11-2012 G.Cosmo tag emdna-V09 981 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 982 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 983 for objects in maps...
1515 984
1516 04-11-2012 M.K. tag emdna-V09-05-33 985 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 986 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 987 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 988 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 989 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 990 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 991 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 992 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 993 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 994 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 995 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 996 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 997 add "else" before "if" statements and
1529 add variables to avoid ma 998 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 999 dna.files : update files (rev 64725)
1531 1000
1532 03-11-2012 S.I. tag emdna-V09-05-32 1001 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 1002 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 1003 classes
1535 1004
1536 24-10-2012 M.K tag emdna-V09 1005 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 1006 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 1007 (previously commented)
1539 1008
1540 23-10-2012 M.K tag emdna-V09 1009 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 1010 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 1011 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 1012
1544 18-10-2012 M.K tag emdna-V09 1013 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 1014 Previous tag did not include history changes
1546 1015
1547 18-10-2012 M.K tag emdna-V09 1016 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 1017 Remove warning
1549 1018
1550 17-10-2012 M.K tag emdna-V09 1019 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 1020 Correct a typo from previous tag
1552 1021
1553 17-10-2012 M.K tag emdna-V09 1022 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 1023 Correct information in headers
1555 Rename G4DNADiffustionControlledM 1024 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 1025 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 1026
1558 01-10-2012 SI, P.Pater tag emdna-V09 1027 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 1028 Force kinetic energy to zero for real killings in models.
1560 1029
1561 12-07-2012 G.Cosmo tag emdna-V09 1030 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 1031 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 1032 constants, in plan to remove implicit inclusion from globals.hh.
1564 1033
1565 11.07.2012 M.K tag emdna-V09 1034 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 1035 Correct warnings introduce in previous tag
1567 1036
1568 11.07.2012 M.K tag emdna-V09 1037 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 1038 Tag to be proposed
1570 1039
1571 25.06.2012 M.K tag emdna-V09-05-21 1040 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 1041 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 1042 Modify molecule's name
1574 << 1043
1575 21.06.2012 S.I tag emdna-V09-05-20 1044 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte << 1045 Update of electron elastic scattering low limit
1577 1046
1578 09.06.2012 M.K tag emdna-V09-05-19 1047 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 1048 Fixed shadowing
1580 1049
1581 04.06.2012 M.K tag emdna-V09-05-18 1050 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 1051 Add G4ITTrackingInteractivity + correct coverity warnings
1583 1052
1584 24.05.2012 M.K tag emdna-V09-05-17 1053 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 1054 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 1055
1587 23.05.2012 M.K tag emdna-V09-05-16 1056 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 1057 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 1058 G4ITStepManager
1590 Prevent call of destructor of G4I 1059 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 1060 G4DNAChemistryManager
1592 1061
1593 23.05.2012 M.K tag emdna-V09-05-15 1062 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 1063 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 1064 when one of its methods is called using a material that is
1596 not defined as a molecule 1065 not defined as a molecule
1597 1066
1598 21.05.2012 M.K tag emdna-V09-05-14 1067 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 1068 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 1069 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 1070 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 1071 Modify all models to use G4DNAMolecularMaterial
1603 1072
1604 14.05.2012 M.K tag emdna-V09-05-13 1073 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 1074 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 1075 Add G4DNADamages
1607 1076
1608 10.05.2012 M.K tag emdna-V09-05-12 1077 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 1078 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 1079 from UserReactionAction::EndProcessing()
1611 1080
1612 08.05.2012 M.K tag emdna-V09-05-11 1081 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 1082 Use inverseErf from CLHEP
1614 1083
1615 03.05.2012 M.K tag emdna-V09-05-10 1084 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 1085 Add erfc function for windows compilator (VC++)
1617 1086
1618 03.05.2012 M.K tag emdna-V09-05-09 1087 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 1088 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 1089
1621 03.05.2012 M.K tag emdna-V09-05-08 1090 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 1091 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 1092 Add new methods in G4ChemistryManager :
1624 - PushMolecule 1093 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 1094 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 1095 Reset() at the end of G4ITStepManager::Process()
1627 1096
1628 30.03.2012 M.K tag emdna-V09-05-07 1097 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 1098 Same as emdna-V09-05-06
1630 1099
1631 30.03.2012 M.K tag emdna-V09-05-06 1100 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 1101 1) Add separate navigator for synchronous tracking
1633 New classes : 1102 New classes :
1634 * G4ITTransportationManager 1103 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 1104 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 1105 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 1106 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 1107 3) Solve bugs with normal and brownian ITTransportation
1639 1108
1640 14.03.2012 M.K tag emdna-V09-05-05 1109 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 1110 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 1111 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 1112 -> become size_t + related changes
1644 * when a poststep process propo 1113 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 1114 => considered as a time, and transportation::computestep
1646 is used 1115 is used
1647 1116
1648 14.03.2012 M.K tag emdna-V09-05-04 1117 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 1118 Fix compilation warning
1650 1119
1651 14.03.2012 M.K tag emdna-V09-05-03 1120 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 1121 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 1122 Fix coverity warnings
1654 1123
1655 18.01.2012 S.I. tag emdna-V09 1124 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 1125 Removal of G4Water* classes in utils
1657 1126
1658 11.01.2012 M.K tag emdna-V09 1127 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 1128 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 1129 concerning the final position of the solvated electron
1661 using Sanche thermalization 1130 using Sanche thermalization
1662 1131
1663 16.12.2011 S.I tag emdna-V09 1132 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 1133 Updated source of cross section file for elastic scattering
1665 1134
1666 25.11.2011 M.K tag emdna-V09 1135 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 1136 Correct a typo in previous tag
1668 1137
1669 25.11.2011 M.K tag emdna-V09 1138 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 1139 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 1140 rather than center of mass in DNAMolecularReaction
1672 1141
1673 21.11.2011 M.K tag emdna-V09 1142 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 1143 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 1144 avoid conflicts with ROOT.
1676 Add short class description (comm 1145 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 1146 in JavaDoc style for doxygen use.
1678 1147
1679 21.11.2011 M.K tag emdna-V09 1148 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1149 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1150 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1151 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1152 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1153 when the time steps returned by the time stepper
1685 and the processes are equal 1154 and the processes are equal
1686 Improve verbose 1155 Improve verbose
1687 1156
1688 21.11.2011 M.K tag emdna-V09 1157 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1158 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1159 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1160 Correct verbose in new models & process
1692 1161
1693 18.11.2011 M.K tag emdna-V09 1162 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl << 1163 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1164 in G4DNAChemistryManager
1696 1165
1697 18.11.2011 M.K tag emdna-V09 1166 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1167 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1168 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1169 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1170
1702 15.11.2011 G.Cosmo tag emdna-V09 1171 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1172 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1173 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1174 Windows.
1706 Fixed compilation warning on icc 1175 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1176 G4MolecularDecayTable.cc
1708 1177
1709 10.11.2011 M.K. tag emdna-V09 1178 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1179 Fix a bug in G4DNATransformElectronModel
1711 1180
1712 10.11.2011 M.K. tag emdna-V09 1181 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1182 Clean classes for release
1714 Add comment into source 1183 Add comment into source
1715 Change name of some methods 1184 Change name of some methods
1716 Transform two independent singlet 1185 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1186 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1187 (ITStepMan + DNAChemMan)
1719 1188
1720 10.11.2011 M.K. tag emdna-V09 1189 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1190 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1191 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1192 the chemistryManager.
1724 1193
1725 09.11.2011 M.K. tag emdna-V09 1194 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1195 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1196 in G4TrackListNode.
1728 Simplify and improve the use of d 1197 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1198 Add more convenient methods in userReactionAction
1730 1199
1731 08.11.2011 M.K. tag emdna-V09 1200 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1201 Fix coverity warnings
1733 1202
1734 07.11.2011 M.K. tag emdna-V09 1203 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1204 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1205 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1206 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1207 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1208 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1209 Clean classes for release
1741 1210
1742 03.11.2011 M.K. tag emdna-V09 1211 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1212 Add dna libs in sources.cmake
1744 1213
1745 03.11.2011 M.K. tag emdna-V09 1214 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1215 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1216 Add dna includes in sources.cmake
1748 << 1217
1749 01.11.2011 M.K. tag emdna-V09 1218 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1219 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1220 G4ITTransportation, G4TrackList on Windows
1752 1221
1753 01.11.2011 G.Cosmo 1222 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1223 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1224 updated GNUMakefiles to have it properly defined.
1756 1225
1757 31.10.2011 M.K tag emdna-V09-04-35 1226 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1227 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1228 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives << 1229 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1230 Fix windows compilation errors & warnings
1762 1231
1763 28.10.2011 M.K tag emdna-V09-04-34 1232 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1233 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1234 Plus remove obsolete G4Exception
1766 1235
1767 28.10.2011 M.K tag emdna-V09-04-33 1236 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1237 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1238 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1239 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1240 to models
1772 1241
1773 27.10.2011 M.K tag emdna-V09-04-32 1242 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1243 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1244 coverity errors.
1776 1245
1777 26.10.2011 M.K tag emdna-V09-04-31 1246 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared << 1247 change std::shared_ptr to CLHEP::shared_ptr
1779 1248
1780 26.10.2011 M.K. tag emdna-V09-04-30 1249 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1250 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1251 G4MolecularConfiguration::fManager added
1783 1252
1784 26.10.2011 M.K. tag emdna-V09-04-29 1253 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1254 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1255 Add electron solvatation process & models
1787 Add chemical processes 1256 Add chemical processes
1788 1257
1789 21.10.2011 M.K. tag emdna-V09-04-28 1258 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model << 1259 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1260 emdna-V09-04-24
1792 << 1261
1793 21.10.2011 M.K. tag emdna-V09-04-27 1262 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1263 CMake fixes from emdna-V09-04-24
1795 << 1264
1796 21.10.2011 M.K. tag emdna-V09-04-26 1265 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous << 1266 Bug fixes and new dev from the previous tag
1798 1267
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1268 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1269 Extension of ionisation by HZE proposed by Z. Francis
1801 1270
1802 20.10.2011 M.K. tag emdna-V09-04-24 1271 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1272 Bug fixes and new dev from the previous tag
1804 << 1273
1805 07.10.2011 M.K. tag emdna-V09-04-23 1274 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files << 1275 First tag with "molecules" files
1807 << 1276
1808 07.10.2011 M.K. tag emdna-V09-04-22 1277 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1278 Add molecules+management directory
1810 First tag with "management" files 1279 First tag with "management" files
1811 1280
1812 09.09.2011 G.Folger tag emdna-V09 1281 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer << 1282 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc << 1283 G4DNAMoleculeManager.cc
1815 1284
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1285 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1286 Updated sources.make and CMakeLists.txt
1818 1287
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1288 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1289 Reorganized whole architecture.
1821 1290
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1291 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1292 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1293 if no deexcitation)
1825 1294
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1295 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1296 Changed code (em0006) numbering for G4Exception
1828 1297
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1298 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1299 Switched to new G4Exception syntax
1831 1300
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1301 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1302 Added enhanced debug information in ionisation models
1834 1303
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1304 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1305 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1306
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1307 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1308 Removed obsolete information.
1840 1309
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1310 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1311 Updated deexcitation initialization in ionization models.
1843 1312
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1313 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1314 Coverity warnings removal
1846 1315
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1316 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1317 - Increased energy limits for
1849 G4DNAChargeIncrease 1318 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1319 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1320 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1321 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1322 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade << 1323 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1324 of ionisation classes for Auger e-
1856 1325
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1326 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1327 Further compilation warnings removal
1859 1328
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1329 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1330 Compilation warnings removal
1862 1331
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1332 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1333 added Atomic Deexcitation to Ionisation Models
1865 1334
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1335 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1336 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1337 G4DNADingfelderChargeIncreaseModel.cc.
1869 1338
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1339 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1340 Changed process sub-type numbering.
1872 1341
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1342 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1343 Fixed coverity warnings.
1875 1344
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1345 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1346 Updated all models for handling of variable density.
1878 1347
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1348 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1349 Addition of dependencies to configuration files.
1881 1350
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1351 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1352 Addition of all files.
1884 1353
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1354 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1355 Creation of dna sub-package in electromagnetic category.