| Geant4 Cross Reference |
1 # Category emdna History << 1 =========================================================
>> 2 Geant4 - an Object-Oriented Toolkit for Simulation in HEP
>> 3 =========================================================
>> 4
>> 5 Category History file
>> 6 ---------------------
>> 7 This file should be used by G4 developers and category coordinators
>> 8 to briefly summarize all major modifications introduced in the code
>> 9 and keep track of all category-tags.
>> 10 It DOES NOT substitute the CVS log-message one should put at every
>> 11 committal in the CVS repository !
>> 12
>> 13 ----------------------------------------------------------
>> 14 * Reverse chronological order (last date on top), please *
>> 15 ----------------------------------------------------------*
2 16
3 See `CONTRIBUTING.rst` for details of **requir << 17 09-02-2018, M.Asai tag emdna-V10-03-31
4 which **must** added in reverse chronological <<
5 It must **not** be used as a substitute for wr <<
6 <<
7 ---------------------------------------------- <<
8 <<
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) <<
10 - missing value in DNA PTB Ionization Structur <<
11 - missing GetMaterial() in DNA PTB Excitation <<
12 <<
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) <<
14 - Modified the molecule names of OH, HO2, O in <<
15 Each molecule configuration has a molecule d <<
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with <<
35 of std::function in G4OctreeFinder. <<
36 <<
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) <<
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with <<
51 Added missing declarations for TG4MoleculeSh <<
52 Based on [GitHub PR#69](https://github.com/G <<
53 <<
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) <<
106 - Use G4FindDataDir to access data libraries i <<
107 <<
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) <<
109 - correct fastercode section for dna opt6 <<
110 <<
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) <<
112 - correct scavenger counter for oxygen <<
113 <<
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) <<
115 - Fixed the K shell bug in G4DNARuddIonisation <<
116 <<
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) <<
118 - improved equilibrium processes, introduced G <<
119 <<
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) <<
121 - In navigation classes, removed references to <<
122 which is now deprecated. <<
123 <<
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) <<
125 - Removed references to unused G4GRSSolid and <<
126 <<
127 ## 2023-08-29 (emdna-V11-01-18) <<
128 - Fix minor/obvious Coverity issues <<
129 <<
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) <<
131 - Apply core clang-tidy fixes plus those for <<
132 - Cons/destructor modernization <<
133 - Readability and logic for conditionals/boo <<
134 <<
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) <<
136 - Apply patch from [GitHub PR 58](https://gith <<
137 - Use std::erfc to avoid precision loss <<
138 - Remove unused header <<
139 <<
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) <<
141 - minor correction for DNA material in option6 <<
142 <<
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) <<
144 - use analytical method for DNA material in op <<
145 <<
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 <<
147 - G4DNARuddIonisationExtendedModel - model re- <<
148 threads, applicable for scaled energy interv <<
149 an ion data is not available proton x-sectio <<
150 used, sampling of delta-electron is done usi <<
151 <<
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) <<
153 - Modified DNA cross section file name to new <<
154 <<
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) <<
156 - Add DNA cross section to dna_option6 <<
157 <<
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) <<
159 - Fix Compilation warnings on XCode <<
160 <<
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) <<
162 - correct the initial values of G4DNAEventSche <<
163 <<
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) <<
165 - add time structure (pulsed beam) to water ra <<
166 <<
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) <<
168 - correct KDTree bug <<
169 <<
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) <<
171 - icsd physicslist: deleted unused model, <<
172 - Apdated RegisterModel function with new stru <<
173 - added model data to G4DNAMaterialManager sin <<
174 <<
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) <<
176 - Fixed compilation warning on macOS/XCode for <<
177 in G4DNAVacuumModel::Initialise(). <<
178 <<
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) <<
180 - Introduced G4DNAMaterialManager to manage av <<
181 and keeps DNA cross section data in one thread <<
182 - minor change in G4VDNAModel <<
183 <<
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) <<
185 - reorganize multiple material model of PTB mo <<
186 G4VDNAModel plays like a data layer for multip <<
187 The concrete models are independent of G4DNAMo <<
188 <<
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) <<
190 - replaced string to material index and clean <<
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, <<
192 G4DNAPTBExcitationStructure) - PTB models <<
193 - added material pointer members for each conc <<
194 - removed unused objects (G4DataVector()) <<
195 <<
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) <<
197 - clean G4DNAModelInterface file for the model <<
198 <<
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) <<
200 - fix coverity of G4DNARuddIonisationExtendedM <<
201 (Uninitialized scalar variable) from cand1 ana <<
202 <<
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 <<
204 - G4DNARuddIonisationExtendedModel - fixed com <<
205 radioactive decay module - before this upd <<
206 only 5 ions have data needed for this mode <<
207 model scaling relation to the carbon ion i <<
208 no data; low-energy limit is used now more <<
209 but not killed, because they may have radi <<
210 lines are removed from the class <<
211 <<
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) <<
213 - Fixed more compilation warnings for implicit <<
214 <<
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) <<
216 - delete unused tests in dna (G4DNAProcessTest <<
217 <<
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) <<
219 - Fixed compilation warnings for implicit type <<
220 <<
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 <<
222 - G4DNAUeharaScreenedRutherfordElasticModel - <<
223 low and high energy limit for the model; r <<
224 <<
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) <<
226 - Fix Coverity issues for ref-09 <<
227 <<
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) <<
229 - minor correction of IRT-syn model (chemistry <<
230 after 1 ps. <<
231 <<
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- <<
233 - Add nitrogen models from PTra code <<
234 <<
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) <<
236 - Fixed minor mistake of file name in G4DNARPW <<
237 - Added protection for HighEnergyLimit/LowEner <<
238 G4DNARPWBAExcitationModel <<
239 <<
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) <<
241 - Fixed compilation warnings on Intel/icx comp <<
242 but not used in G4ITNavigator2. <<
243 <<
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) <<
245 - Fix user's report for IRT model. <<
246 If the first IRTSampling won't give any rea <<
247 <<
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) <<
249 - Fix Coverity static analysis for ref-08 <<
250 uninit_member in G4DNAMillerGreenExcitationMo <<
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI <<
252 Use auto & instead of auto : G4ITFinder, G4DN <<
253 <<
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) <<
255 - Resolve dependency inconsistencies : <<
256 dna/management/include/G4ChemicalMoleculeF <<
257 dna/management/include/G4UserMeshAction.hh <<
258 dna/management/include/G4OctreeFinder.hh i <<
259 <<
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) <<
261 - Partially resolve dependency inconsistencies <<
262 - NB: cannot be resolved fully without intro <<
263 G4emdna-man, G4emdna-molman, G4emdna-utils <<
264 <<
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) <<
266 - Define G4CT_MAX_COUNT for changing "compile <<
267 errors on NVHPC compiler. <<
268 <<
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 <<
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo <<
271 cleanup according to the recent G4VEmProce <<
272 headers are moved to source; C++11 keyward <<
273 <<
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) <<
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela <<
276 G4DNACPA100IonisationModel.cc, G4DNAChampion <<
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo <<
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx <<
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis <<
280 G4DNASancheExcitationModel.cc : <<
281 use G4FindDataDir("G4LEDATA") to find datase <<
282 <<
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) <<
284 - correct DNA ion definitions in G4DNARuddIoni <<
285 <<
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) <<
287 - G4Octree : fixed Coverity warning. <<
288 <<
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) <<
290 - update data structure to improve performance <<
291 <<
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) <<
293 - G4ITTransportation: fixed misuse of bitwise <<
294 <<
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) <<
296 - Added missing headers. <<
297 <<
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) <<
299 - change the scavenging filter of the IRT beyo <<
300 <<
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) <<
302 - Add localthread for fUse of G4VMoleculeCount <<
303 <<
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa <<
305 - Incorporation of model based on RPWBA to tra <<
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI <<
307 <<
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) <<
309 - add UserBrownianAction in G4DNABrownianTrans <<
310 G4DNAMolecularDissociation <<
311 - replace G4int by int64_t for width integer t <<
312 - add fResetScavenger in G4SchedulerMessenger <<
313 <<
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) <<
315 - save local instances for recurrent access to <<
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo <<
317 G4DNARuddIonisationModel <<
318 - use G4Pow and G4Log instead of std::pow and <<
319 - inside G4DNARuddIonisationExtendedModel comm <<
320 inside G4DNAGenericIonsManager <<
321 <<
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) <<
323 - Debug the report #2235 which might be relate <<
324 - Clean code <<
325 - Delete G4ITFinder.cc <<
326 <<
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) <<
328 - save local instances for recurrent access to <<
329 G4DNADingfelderChargeDecreaseModel and G4DNADi <<
330 - use G4Pow and G4Log instead of std::pow and <<
331 <<
332 ## 2022-03-18 SI (emdna-V11-00-10) <<
333 - add protection in G4DNACPA100IonisationModel <<
334 <<
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) <<
336 - remove macro commands to control the chemist <<
337 (creating models in G4SchedulerMessenger can m <<
338 - add flag OctreeFinder in IRT_syn's Initializ <<
339 <<
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) <<
341 - add macro commands to control the chemistry <<
342 parameters including the chemical molecules an <<
343 <<
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) <<
345 - optimize IRT-syn model, use reaction radius <<
346 - delete G4VReactionType, G4DNAReactionTypeMan <<
347 G4DNAPartiallyDiffusionControlled <<
348 - delete G4DNAIRT_geomtries <<
349 <<
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) <<
351 - `G4ITTransportation`: Make `PrepareState` mo <<
352 - `G4DNAPolyNucleotideReactionProcess`: <<
353 - Move `PrepareState` and `State` macros int <<
354 - Make `PrepareState` more function-like, ex <<
355 - Move variable `pMoleculeA` under `G4VERBOS <<
356 <<
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) <<
358 - add the condition of water material for the <<
359 warning in G4DNAMolecularDissociation::DecayIt <<
360 <<
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) <<
362 - modify the macro in G4Molecule.cc and G4ITTy <<
363 <<
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) <<
365 - Prefer pointer to `const G4Material` if poss <<
366 <<
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) <<
368 - Remove useless `const_cast` of `G4VSensitive <<
369 <<
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) <<
371 - add G4DNAPolyNucleotideReactionProcess, G4VD <<
372 files for DNA damage applications <<
373 <<
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) <<
375 - Change to new Markdown History format <<
376 <<
377 --- <<
378 <<
379 # History entries prior to 11.0 <<
380 <<
381 8-11-2021, H. Tran, emdna-V10-07-15 <<
382 - corrected Circular dependencies for mesoscop <<
383 - corrected the problem in IRT <<
384 <<
385 4-11-2021, H. Tran, emdna-V10-07-14 <<
386 - define a G4FakeParticleID::fLastValue in the <<
387 delete G4FakeParticleID.cc, <<
388 solve arithmetic problems, <<
389 Added new mesoscopic model for dna chemistry <<
390 <<
391 21-10-2021, W.G.Shin, emdna-V10-07-13 <<
392 - Added a virtual classes for DNA geometry - G <<
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul <<
394 G4ITModelProcessor, G4Sch <<
395 G4DNAMolecularReactionTab <<
396 <<
397 23-09-2021, A. Ribon, emdna-V10-07-12 <<
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit <<
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh <<
400 G4DNAChargeIncrease, G4DNAElectronSolvation, <<
401 G4DNASecondOrderReaction, G4DNAElectronHoleR <<
402 G4DNABrownianTransportation : replaced hardw <<
403 with enum values introduced in the new class <<
404 <<
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 <<
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati <<
407 G4VLEPSModel - updated interfaces to G4Physi <<
408 <<
409 16-07-2021, D. Sakata, emdna-V10-07-10 <<
410 - Fixed initialization error in G4DNAELSEPAEla <<
411 <<
412 28-06-2021, G. Cosmo, emdna-V10-07-09 <<
413 - Fixed compilation error in G4ITMultiNavigato <<
414 enabled. <<
415 <<
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 <<
417 - Added new classes G4DNADiracRMatrixExcitatio <<
418 G4DNAQuinnPlasmonExcitatio <<
419 G4DNARelativisticIonisatio <<
420 G4DNAPlasmonExcitation <<
421 - Modified G4DNAELSEPAElasticModel for gold <<
422 <<
423 9-05-2021, H.Tran, tag emdna-V10-07-07 <<
424 - Add IRT-syn model <<
425 <<
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 <<
427 - Migrate build to modular CMake API <<
428 <<
429 27-04-2021, H.Tran, tag emdna-V10-07-05 <<
430 - G4DNAElectronHoleRecombination: added Octree <<
431 - G4DNABrownianTransportation: modified AlongS <<
432 - added OctreeFinder and IRTUtils <<
433 <<
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 <<
435 - G4DNABornAngle, G4DNARuddAngle - updated pri <<
436 <<
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 <<
438 - Move DNA-related Unit Tests from lowenergy/t <<
439 <<
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 <<
441 - Fixed dependency on g4tools, now moved to ex <<
442 <<
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 <<
444 - G4DNAElectronHoleRecombination <<
445 Dissociation channel of electron-hole recomb <<
446 G4EmDNAChemistry, _option1, _option2, _optio <<
447 - G4DNAWaterDissociationDisplacer <<
448 Added the fragment displacement for new diss <<
449 <<
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 <<
451 - Fix thread contention on mutable data in G4D <<
452 help resolving observed crashes in MT runs. <<
453 Some code cleanup. <<
454 <<
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 <<
456 - G4DNAMolecularMaterial - removed commented l <<
457 - History file fixed <<
458 <<
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 <<
460 - G4DNAMolecularMaterial - attempt to fix nigh <<
461 in chem6 example - do not delete instance of <<
462 <<
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 <<
464 - Added dependency on analysis/g4tools in GNUm <<
465 required after analysis update (analysis-V10 <<
466 <<
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 <<
468 - Fixed coverity warning <<
469 <<
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 <<
471 - Fixed coverity warnings <<
472 - Fix of IRT bug <<
473 (protection for the crash induced by empty re <<
474 <<
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 <<
476 - Add missing G4analysismng module dependency <<
477 <<
478 20-05-20: W.G.Shin emdna-V10-06-05 <<
479 - Revised displacement of OH radicals of B1A1 <<
480 based on momentum conservation in G4DNAWaterDi <<
481 - Added missing History <<
482 <<
483 26-04-20: W.G.Shin emdna-V10-06-04 <<
484 - Fixed coverity test <<
485 <<
486 15-04-20: G.Cosmo emdna-V10-06-03 <<
487 - G4MoleculeDefinition: copy constructor and a <<
488 are not allowed (as for G4ParticleDefinition <<
489 <<
490 19-02-20: W.G.Shin emdna-V10-06-02 <<
491 - Fixed memory issue on G4DNAMolecularReaction <<
492 - Revised headeres of IRT classes <<
493 <<
494 12-02-20: W.G.Shin emdna-V10-06-01 <<
495 - Added protections floating point exception i <<
496 <<
497 10-01-20: W.G.Shin emdna-V10-06-00 <<
498 - Added classes for IRT <<
499 - Added features in management classes for IRT <<
500 G4ITModelProcessor ...) <<
501 - Added features in G4DNAMolecularReactionTabl <<
502 - Added molecules of Plante et al. (2017) (Oxy <<
503 <<
504 15-11-19: G.Cosmo emdna-V10-05-11 <<
505 - Fixed cases of implicit type conversions fro <<
506 <<
507 8-11-19: HT, tag emdna-V10-05-10 <<
508 - Fixed the exception divide by zero of diffus <<
509 G4DNABrownianTransportation::AlongStepGetPhysi <<
510 for the case of static molecules (DNA) (diffus <<
511 <<
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 <<
513 - Enabled G4ItNavigator{1,2} to flag if it enc <<
514 of external physical volume (meant for adapt <<
515 <<
516 19-10-19: WGS, SI, tag emdna-V10-05-08 <<
517 - Added new model G4DNAELSEPAElasticModel <<
518 <<
519 11-10-19: WGS, SI, tag emdna-V10-05-07 <<
520 - G4DNAOneStepThermalizationModel.* : <<
521 added Kreipl and Meesungnoen amorphous ice mod <<
522 - G4DNAWaterDissociationDisplacer* : updated <<
523 <<
524 03-06-2019, MK, tag emdna-V10-05-06 <<
525 - Fix GCC9 warnings <<
526 <<
527 26-03-2019, HT, tag emdna-V10-05-05 <<
528 - Added G4DNAMolecule <<
529 <<
530 10-03-2019, MK, tag emdna-V10-05-04 <<
531 - Fix reaction site issue <<
532 - Chemistry: clarify pointer ownership, clean <<
533 <<
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 <<
535 - Fixed typos in printouts in G4MolecularConfi <<
536 G4VITRestProcess, G4DNAElectronHoleRecombina <<
537 <<
538 18-01-2019, HT, tag emdna-V10-05-02 <<
539 - Transformed the exception into warning in G4 <<
540 <<
541 28-12-2018, MK, tag emdna-V10-05-01 <<
542 DEV-300 : G4DNAChemistryManager clarify pointe <<
543 <<
544 05-01-2019, HT, tag emdna-V10-05-00 <<
545 - moved the checking position of track status <<
546 in G4ITStepProcessor::SetInitialStep() <<
547 <<
548 01-09-2018, SI, tag emdna-V10-04-10 <<
549 renamed tag <<
550 <<
551 01-09-2018, SI, tag emdna-v10-04-09 <<
552 - bugzilla 2084 <<
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id <<
554 <<
555 30-07-2018, SI, tag emdna-V10-04-08 <<
556 - included upper energy limit of models (2) <<
557 <<
558 29-07-2018, SI, tag emdna-V10-04-07 <<
559 - included upper energy limit of models <<
560 <<
561 01-07-2018, SI, tag emdna-V10-04-06 <<
562 - added protection in Auger emission <<
563 <<
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 <<
565 - updated Si mass in G4DNAGenericIonsManager <<
566 <<
567 22-06-2018, SI tag emdna-V10-04-04 <<
568 - fixed warnings in lepts models <<
569 <<
570 14-05-2018, SI tag emdna-V10-04-03 <<
571 - chemistry update by Mathieu <<
572 <<
573 01-05-2018, SI tag emdna-V10-04-02 <<
574 - chemistry update by Mathieu <<
575 <<
576 09-02-2018, M.Asai tag emdna-V10-04-01 <<
577 - G4DNAMolecularMaterial.cc : 18 - G4DNAMolecularMaterial.cc :
578 GetDensityTableFor() and GetNumMolPerVolTabl 19 GetDensityTableFor() and GetNumMolPerVolTableFor() methods are accepted
579 at G4State_Init rather than G4State_Idle. 20 at G4State_Init rather than G4State_Idle.
580 - Co-works with run-V10-04-01 and global-V10-0 21 - Co-works with run-V10-04-01 and global-V10-04-01.
581 22
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 << 23 21-12-2017, G.Cosmo
583 - Fixed self-consistency in headers (missing # 24 - Fixed self-consistency in headers (missing #include) in G4IosFlagsSaver,
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff 25 G4KDNode, G4MoleculeIterator and G4LEPTSDiffXS.
585 Fixed spurious definition of G4IT namespace 26 Fixed spurious definition of G4IT namespace in G4ITMultiNavigator header.
586 Thanks to Raphael Isemann for reporting thes 27 Thanks to Raphael Isemann for reporting these.
587 28
588 01-11-2017, MK tag emdna-V10-03-30 29 01-11-2017, MK tag emdna-V10-03-30
589 - remove models/test directory 30 - remove models/test directory
590 31
591 31-10-2017, JA ( tag missing ) 32 31-10-2017, JA ( tag missing )
592 - G4KDNode.hh: Add missing included file - nee 33 - G4KDNode.hh: Add missing included file - needed in test
593 34
594 16-08-2017, SI tag emdna-V10-03-28 35 16-08-2017, SI tag emdna-V10-03-28
595 - updated variable types in models 36 - updated variable types in models
596 37
597 10-08-2017, SI tag emdna-V10-03-27 38 10-08-2017, SI tag emdna-V10-03-27
598 - test 39 - test
599 40
600 10-08-2017, SI tag emdna-V10-03-26 41 10-08-2017, SI tag emdna-V10-03-26
601 - same as previous 42 - same as previous
602 43
603 09-08-2017, SI tag emdna-V10-03-25 44 09-08-2017, SI tag emdna-V10-03-25
604 - same as previous 45 - same as previous
605 46
606 09-08-2017, SI tag emdna-V10-03-24 47 09-08-2017, SI tag emdna-V10-03-24
607 - G4DNAEmfietzoglouIonisationModel: added prot 48 - G4DNAEmfietzoglouIonisationModel: added protection for out of bound access
608 49
609 03-08-2017, VI tag emdna-V10-03-23 50 03-08-2017, VI tag emdna-V10-03-23
610 - G4DNAExcitation, G4DNAIonisation - make cohe 51 - G4DNAExcitation, G4DNAIonisation - make coherent model initialisation
611 52
612 28-07-2017, SI, tag emdna-V10-03-22 53 28-07-2017, SI, tag emdna-V10-03-22
613 - added stationary mode flag to CPA100 ionisat 54 - added stationary mode flag to CPA100 ionisation.
614 55
615 04-07-2017, SI, tag emdna-V10-03-21 56 04-07-2017, SI, tag emdna-V10-03-21
616 - added tagging of atom. deexc. products in io 57 - added tagging of atom. deexc. products in ionisation models.
617 58
618 31-05-2017, SM, tag emdna-V10-03-20 59 31-05-2017, SM, tag emdna-V10-03-20
619 - Correct windows issues with path of diff. CS 60 - Correct windows issues with path of diff. CS data file.
620 61
621 31-05-2017, SI, tag emdna-V10-03-19 62 31-05-2017, SI, tag emdna-V10-03-19
622 - roll-back (Windows issues with previous tag) 63 - roll-back (Windows issues with previous tag)
623 64
624 24-05-2017, SI, tag emdna-V10-03-18 65 24-05-2017, SI, tag emdna-V10-03-18
625 - added tagging of atom. deexc. products in io 66 - added tagging of atom. deexc. products in ionisation models.
626 67
627 11-05-2017, VI tag emdna-V10-03-17 68 11-05-2017, VI tag emdna-V10-03-17
628 - fix for gcc 7.1 warnings in G4DNACrossSectio << 69 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
629 70
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 71 10-05-2017, NL, MK, SI, tag emdna-V10-03-16
631 - fix for gcc 7.1 warnings in G4DNACrossSectio << 72 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
632 73
633 03-05-2017, SM, tag emdna-V10-03-15 74 03-05-2017, SM, tag emdna-V10-03-15
634 - add the new G4DNADummyModel and allow the co << 75 - add the new G4DNADummyModel and allow the combination of G4VEmModel and G4VDNAModel in G4DNAModelInterface.
635 76
636 27-04-2017, SM, tag emdna-V10-03-14 77 27-04-2017, SM, tag emdna-V10-03-14
637 - correct small typo mistakes. 78 - correct small typo mistakes.
638 79
639 27-04-2017, SM, tag emdna-V10-03-13 80 27-04-2017, SM, tag emdna-V10-03-13
640 - update Models/G4DNAModelInterface to correct 81 - update Models/G4DNAModelInterface to correctly use G4DNAMolecularMaterial
641 82
642 10-03-2017, MK, tag emdna-V10-03-12 83 10-03-2017, MK, tag emdna-V10-03-12
643 - update utils/GNUmakefile 84 - update utils/GNUmakefile
644 85
645 13-02-2017, MK, tag emdna-V10-03-11 86 13-02-2017, MK, tag emdna-V10-03-11
646 - G4DNAMolecularMaterial: update doxygen doc 87 - G4DNAMolecularMaterial: update doxygen doc
647 88
648 13-02-2017, MK, tag emdna-V10-03-10 89 13-02-2017, MK, tag emdna-V10-03-10
649 - G4DNAMolecularMaterial: << 90 - G4DNAMolecularMaterial:
650 remove newly introduced methods, add fatal e 91 remove newly introduced methods, add fatal exception if used
651 add doxygen documentation 92 add doxygen documentation
652 93
653 10-02-2017, MK, tag emdna-V10-03-09 94 10-02-2017, MK, tag emdna-V10-03-09
654 - Introducing G4PhysChemIO 95 - Introducing G4PhysChemIO
655 - Move call to G4TrackList::Pop(track) from G4 96 - Move call to G4TrackList::Pop(track) from G4ITTrackingManager
656 to G4ITTrackHolder. And make sure track stat 97 to G4ITTrackHolder. And make sure track status is set to fStopAndKill
657 when G4ITTrackHolder::PushToKill is called. 98 when G4ITTrackHolder::PushToKill is called.
658 99
659 09-02-2017, MK, tag emdna-V10-03-08 100 09-02-2017, MK, tag emdna-V10-03-08
660 - G4KDNode.hh: remove unused G4ThreeVector hea 101 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation 102 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t 103 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization 104 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K 105 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665 106
666 24-01-2017, SM, tag emdna-V10-03-07 107 24-01-2017, SM, tag emdna-V10-03-07
667 - add a ifdef to remove a warning (windows onl 108 - add a ifdef to remove a warning (windows only) related to the use of several levels of map.
668 109
669 23-01-2017, SM, tag emdna-V10-03-06 110 23-01-2017, SM, tag emdna-V10-03-06
670 - add missing G4DNAModelInterface files (.hh a 111 - add missing G4DNAModelInterface files (.hh and .cc) to the source.cmake
671 112
672 23-01-2017, SM CV, tag emdna-V10-03-05 113 23-01-2017, SM CV, tag emdna-V10-03-05
673 - add new G4DNAPTB* classes and the structure 114 - add new G4DNAPTB* classes and the structure of the new material management system
674 115
675 14-01-2017, MK, tag emdna-V10-02-37 116 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingMan 117 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction 118 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Schedule << 119 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679 120
680 28-12-2016, SI, tag emdna-V10-03-04 121 28-12-2016, SI, tag emdna-V10-03-04
681 - extended upper energy limit of protons for << 122 - extended upper energy limit of protons for
682 G4DNARuddIonisationExtendedModel 123 G4DNARuddIonisationExtendedModel
683 124
684 27-12-2016, SI, tag emdna-V10-03-03 125 27-12-2016, SI, tag emdna-V10-03-03
685 - updated references of CPA100 classes 126 - updated references of CPA100 classes
686 127
687 23-12-2016, SI, tag emdna-V10-03-02 128 23-12-2016, SI, tag emdna-V10-03-02
688 - updated sources.cmake 129 - updated sources.cmake
689 130
690 23-12-2016, SI, tag emdna-V10-03-01 131 23-12-2016, SI, tag emdna-V10-03-01
691 - commit of first CPA100 classes, part 2 132 - commit of first CPA100 classes, part 2
692 133
693 21-12-2016, SI, tag emdna-V10-03-00 134 21-12-2016, SI, tag emdna-V10-03-00
694 - commit of first CPA100 classes 135 - commit of first CPA100 classes
695 136
696 27-11-2016, MK, tag emdna-V10-02-36 137 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 138 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 139 - G4DNADamages -> G4DNADamage
699 140
700 17-11-2016, MK, tag emdna-V10-02-35 141 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 142 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 143
703 16-11-2016, MK, tag emdna-V10-02-34 144 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat << 145 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 146 displacement types can be thread shared
706 - G4TrackState: Move implementation of static << 147 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 148 G4VTrackStateID::Create() to cc file - windows crash
708 149
709 15-11-2016, MK, tag emdna-V10-02-33 150 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 151 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 152
712 14-11-2016, MK, tag emdna-V10-02-32 153 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t << 154 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 155 windows platforms
715 156
716 14-11-2016, MK, tag emdna-V10-02-31 157 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: << 158 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 159 tag init constexpr factor with number rather than expression
719 160
720 14-11-2016, MK, tag emdna-V10-02-30 161 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 162 - Use CLHEP::pi instead of M_PI
722 163
723 14-11-2016, MK, tag emdna-V10-02-29 164 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 165 - Correct bracket enclosing
725 166
726 14-11-2016, MK, tag emdna-V10-02-28 167 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 168 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 169 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 170 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 171 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 172 - Adds and use G4CTCounter
732 173
733 02-11-2016, MK, tag emdna-V10-02-27 174 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom << 175 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 176 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo << 177 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety << 178 computeStep & computeSafety
738 179
739 07-08-2016, SI, tag emdna-V10-02-26 180 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 181 - added stationnary mode to sub-excitation electron processes
741 182
742 23-06-2016, MK 183 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 184 - G4Scheduler: move G4IosFlagsSaver to Process()
744 185
745 3-06-2016, MK, tag emdna-V10-02-25 186 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 187 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 188 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 189 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 190
750 3-06-2016, MK, tag emdna-V10-02-24 191 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 192 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 193 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 194 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 195 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 196 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 197 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc << 198 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 199 model used for another part than e-
759 200
760 1-06-2016, MK, tag emdna-V10-02-23 201 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 202 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 203 logic for interface with physics models
763 204
764 31-05-2016, MK, tag emdna-V10-02-22 205 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 206 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 207
767 28-05-2016, MK, tag emdna-V10-02-21 208 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 209 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 210 one of the previous tags
770 211
771 19-05-2016, MK, tag emdna-V10-02-20 212 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 213 - G4ITNavigator: remove warnings on gcc6.1
773 214
774 17-05-2016, MK, tag emdna-V10-02-19 215 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 216 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 217 correct model and process names for solvation
777 218
778 12-05-2016, MK, tag emdna-V10-02-18 219 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: << 220 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 221 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne << 222 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 223 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 224 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 225 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 226 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 227 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim << 228 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 229 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 230 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 231 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 232 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 233 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 234 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 235 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 236 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 237 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 238 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 239 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 240 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 241 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 242 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 243 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv << 244 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 245 created; otherwise, the primary electron is killed
805 246
806 30-04-2016, MK, tag emdna-V10-02-17 247 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 248 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 249
809 30-04-2016, MK, tag emdna-V10-02-16 250 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 251 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p << 252 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 253 unregistered molecule definition
813 254
814 22-04-2016, MK, tag emdna-V10-02-15 255 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 256 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 257 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 258
818 22-04-2016, MK, tag emdna-V10-02-14 259 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit << 260 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 261 remove usage of internal energy boundaries
821 262
822 19-03-2016, SI, tag emdna-V10-02-13 263 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 264 - added nrj extensibility to SR and USR models
824 265
825 11-03-2016, SI, tag emdna-V10-02-12 266 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 267 -roll back to files in emdna-V10-02-06
827 268
828 10-03-2016, SI, tag emdna-V10-02-11 269 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 270 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 271 and G4DNAScreenedRutherfordElasticModel
831 272
832 10-03-2016, SI, tag emdna-V10-02-10 273 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 274 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 275
835 07-03-2016, SI, tag emdna-V10-02-09 276 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 277 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 278 of G4DNAUeharaScreenedRutherfordElasticModel
838 279
839 06-03-2016, SI, tag emdna-V10-02-08 280 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 281 -removed useless G4Pow declaration
841 282
842 04-03-2016, SI, tag emdna-V10-02-07 283 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 284 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 285 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 286
846 02-03-2016, SI, tag emdna-V10-02-06 287 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 288 -replaced std::exp by G4Exp
848 289
849 02-03-2016, SI, tag emdna-V10-02-05 290 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 291 -replaced std::exp by G4Exp
851 292
852 02-03-2016, SI, tag emdna-V10-02-04 293 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 294 -replaced std::exp by G4Exp
854 295
855 01-03-2016, SI, tag emdna-V10-02-03 296 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 297 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 298 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 299 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 300 by S. Okada (KEK, JP)
860 301
861 17-02-2016, MK, tag emdna-V10-02-02 302 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 303 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 304
864 16-12-2015, SI, tag emdna-V10-02-01 305 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: << 306 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 307 added protection on energy for interpolation method change
867 308
868 16-12-2015, SI, tag emdna-V10-02-00 309 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add << 310 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 311 energy
871 312
872 13-11-2015, MK, tag emdna-V10-01-55 313 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 314 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 315 file
875 316
876 10-11-2015, MK, tag emdna-V10-01-54 317 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 318 * remove unused variables
878 319
879 10-11-2015, MK, tag emdna-V10-01-53 320 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 321 * Coverity fixes
881 322
882 06-11-2015, MK, tag emdna-V10-01-52 323 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 324 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 325
885 06-11-2015, MK, tag emdna-V10-01-51 326 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 327 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 328 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 329
889 06-11-2015, MK, tag emdna-V10-01-50 330 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 331 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 332 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 333 * Add G4ITStepProcessorState_Lock.hh
893 334
894 06-11-2015, MK, tag emdna-V10-01-49 335 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 336 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 337 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 338 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 339 but in the source file - causing crashes on windows
899 340
900 04-11-2015, MK, tag emdna-V10-01-48 341 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 342 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 343 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 344 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 345 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 346 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 347 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 348 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 349 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 350 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using << 351 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 352 all dissociation products have been defined (they will just not be taken
912 into account) 353 into account)
913 * G4DNAMolecularReactionTable: delete reaction 354 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 355
915 03-11-2015, MK, tag emdna-V10-01-47 356 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 357 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac << 358 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 359 the call
919 360
920 03-11-2015, MK, tag emdna-V10-01-46 361 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 362 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 363 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 364 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 365 (causing navigator complains)
925 << 366
926 03-11-2015, MK, tag emdna-V10-01-45 367 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 368 * G4Serialize: Add definition in header for G4String
928 369
929 02-11-2015, MK, tag emdna-V10-01-44 370 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 371 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 372 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 373 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 374 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon << 375 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 376 -> G4MolecularConfMan is taking care of this
936 << 377
937 30-10-2015, MK, tag emdna-V10-01-43 378 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter << 379 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 380 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 381 * Unit tests corrected
941 * G4VITDiscreteProcess added 382 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 383 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 384 * Intermediate update for 10.2 release
944 << 385
945 27-10-2015, MK, tag emdna-V10-01-42 386 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 387 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 << 388
948 26-10-2015, MK, tag emdna-V10-01-41 389 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 390 * Sanche model: try to solve std::vector out of bounds
950 391
951 23-10-2015, MK, tag emdna-V10-01-40 392 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 393 * remove all CLHEP::shared_ptr usage
953 << 394
954 23-10-2015, CV, SM, tag emdna-V10-01-39 395 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel << 396 * Addded base class G4VDNAPTBModel
956 397
957 28-09-2015, SI, tag emdna-V10-01-38 398 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 399 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 400
960 19-09-2015, MK, tag emdna-V10-01-37 401 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 402 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 403 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 404
964 17-09-2015, MK, tag emdna-V10-01-36 405 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 406 * G4MoleculeGun: Remove compilation warnings
966 407
967 04-09-2015 MK, tag emdna-V10-01-35 408 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 409 * Fix G4MoleculeGun compilation errors
969 410
970 03-09-2015 SI, tag emdna-V10-01-34 411 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 412 * Added stationary regime to all inelastic models
972 413
973 19-08-2015, MK 414 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 415 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 416 - compatible with both Smoluchowski & Gillespie models
976 417
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 418 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 419 * Added easier handling of cumulative proba. in SR elastic models
979 420
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 421 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 422 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 423 declaration of G4MoleculeShoot.
983 424
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 425 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 426 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 427 declaration of G4MoleculeShootMessenger.
987 428
988 12-08-2015, MK, tag emdna-V10-01-29 429 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 430 * Add G4Serialize in the build tree temporarily
990 431
991 12-08-2015, MK, tag emdna-V10-01-28 432 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 433 * G4Serialize added
993 434
994 12-08-2015, MK 435 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 436 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 437
997 24-07-2015, MK 438 24-07-2015, MK
998 - G4MolecularReactionTable 439 - G4MolecularReactionTable
999 * Add get methods 440 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 441 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 442 * Molecule gun : place randomly in a box
1002 443
1003 15-07-2015, MK 444 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA << 445 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 446 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 447 * processes & models initialisation again
1007 448
1008 15-07-2015, MK, tag emdna-V10-01-26 449 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 450 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 451 * add macro to prevent warnings in non-verbose mode
1011 452
1012 11-07-2015, MK, tag emdna-V10-01-25 453 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 454 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 455 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 456
1016 10-07-2015, MK, tag emdna-V10-01-24 457 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 458 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 459 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 460 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 461 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 462
1022 08-07-2015, MK, tag emdna-V10-01-23 463 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 464 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 465 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 466 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose << 467 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 << 468 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 469 - G4MoleculeDefinition:
1029 ::SetFormatedName added 470 ::SetFormatedName added
1030 ::NewConfiguration methods added 471 ::NewConfiguration methods added
1031 ::NewConfiguration added 472 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 473 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 474 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 475 ::Finalize added
1035 - G4MolecularConfiguration: << 476 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 477 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 478 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 479 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec << 480 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula << 481 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 482 than molecule models
1042 - G4Molecule add constructor where only G4Mol 483 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 484 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 485 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 486 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 487 - G4DNAElectronHoleRecombination added
1047 488
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 489 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c << 490 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 491 fasterCode usage on shell selection.
1051 492
1052 26-06-2015, MK 493 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to << 494 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 495 warning message description
1055 496
1056 16-06-205, MK 497 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 498 - Add G4Scheduler::GetGun()
1058 499
1059 16-06-2015, MK, tag emdna-V10-01-21 500 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 501 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 502 - G4DNAIonElasticModel: clean and fix double free
1062 503
1063 12-06-2015, MK, tag emdna-V10-01-20 504 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 505 - remove virtual keyword from G4IT::GetPosition()
1065 506
1066 04-06-2015, MK 507 04-06-2015, MK
1067 - just cosmetics 508 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 509 - remove virtual keyword from G4IT::operator[]
1069 510
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 511 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 512 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 513 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 514 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 515 - Fully qualify std::string elsewhere as needed to adjust
1075 516
1076 22-05-2015, John Allison, tag emdna-V10-01-18 517 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 518 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 519 "G4Threading::IsMasterThread()".
1079 520
1080 17-05-2015, MK, tag emdna-V10-01-17 521 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 522 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 523 - Correct sources.cmake
1083 - Born headears: includes both model versions << 524 - Born headears: includes both model versions when proxy header is included
1084 525
1085 16-05-2015, MK, tag emdna-V10-01-16 526 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 527 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 528 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 529 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 530 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 531 - Add G4DNABornExcitationModel2 (temporary)
1091 532
1092 15-05-2015, MK, tag emdna-V10-01-15 533 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 534 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 535
1095 14-05-2015, MK, tag emdna-V10-01-14 536 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 537 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 538
1098 14-05-2015, MK, tag emdna-V10-01-13 539 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 540 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 541 - G4ITReaction: try to solve compilation error
1101 542
1102 12-05-2015, MK, tag emdna-V10-01-12 543 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 544 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 545
1105 12-05-2015, MK, tag emdna-V10-01-11 546 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 547 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 548
1108 11-05-2015, MK, tag emdna-V10-01-10 549 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 550 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 551 +Add GetPartialCrossSection
1111 +Code cleaning 552 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 553 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 554 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 555 - G4DNAChemistryManager::GetValue(...) added
1115 556
1116 02-05-2015, MK 557 02-05-2015, MK
1117 - Update G4TrackState & related classes 558 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: << 559 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian << 560 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 561 +comment useless method
1121 - G4Scheduler: << 562 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS << 563 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime << 564 +remove fTmpEndTime
1124 +Add CanICarryOn 565 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 566 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 567
1127 18-03-2015, MK, tag emdna-V10-01-08 568 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 569 - Same as before, just add the missing History file
1129 570
1130 18-03-2015, MK, tag emdna-V10-01-07 571 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 572 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 573 instead of a reference
1133 574
1134 12-02-2015, MK, tag emdna-V10-01-06 575 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 576 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 577 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi << 578 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 579
1139 11-02-2015, MK, tag emdna-V10-01-05 580 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 581 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 582 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 583 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 584
1144 16-01-2015, SI, tag emdna-V10-01-04 585 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 586 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 587
1147 14-12-2014, MK, tag emdna-V10-01-03 588 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 589 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval << 590 - ScreenRutherfordElastic: correct retrieval of water density
1150 591
1151 13-12-2014, SI, tag emdna-V10-01-02 592 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 593 - Added elastic model by H. Tran.
1153 594
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 595 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 596 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 597 to allow for compilation on Linux/clang-3.5.
1157 598
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 599 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 600 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 601 include missing files:
1161 G4ITTransportationManager.icc 602 G4ITTransportationManager.icc
1162 G4KDNode.icc 603 G4KDNode.icc
1163 G4KDTree.icc 604 G4KDTree.icc
1164 G4MoleculeFinder.hh 605 G4MoleculeFinder.hh
1165 606
1166 01-12-2014, MK, tag emdna-V10-00-63 607 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 608 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 609 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 610 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 611 when the particle has reached a boundary
1171 612
1172 28-11-2014, MK, tag emdna-V10-00-62 613 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 614 - Retag
1174 615
1175 28-11-2014, MK, tag emdna-V10-00-61 616 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 617 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 618 - Fix Brownian navigation
1178 - Some fixes related to scheduler 619 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 620 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 621 - Enhance comments
1181 622
1182 24-11-2014, MK, tag emdna-V10-00-60 623 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 624 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 625
1185 24-11-2014, MK, tag emdna-V10-00-59 626 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 627 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 628 - Remove useless verbose
1188 - Try to compile on all platforms 629 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 630 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 631 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 632 Just registering constructor is enough to initialized the chemistry
1192 633
1193 24-11-2014, MK, tag emdna-V10-00-58 634 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 635 - G4FastList: remove all friend declarations
1195 636
1196 22-11-2014, MK, tag emdna-V10-00-57 637 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 638 - Another attempt to compile G4FastList on all platforms
1198 639
1199 22-11-2014, MK, tag emdna-V10-00-56 640 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 641 - Attempt to compile G4FastList on all platforms
1201 642
1202 21-11-2014, MK, tag emdna-V10-00-55 643 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 644 - Attempt to compile G4FastList with clang
1204 645
1205 21-11-2014, MK, tag emdna-V10-00-54 646 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 647 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou << 648 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 649 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 650 - Update G4ITNavigator2 to the G4Navigator of John
1210 651
1211 21-11-2014, MK, tag emdna-V10-00-53 652 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b << 653 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 654 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 655 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time << 656 is false by default --> uses the random time computation for crossing
1216 boundaries 657 boundaries
1217 658
1218 20-11-2014, SI, tag emdna-V10-00-52 659 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 660 - Improved error message for missing data in PW elastic model
1220 661
1221 08-11-2014, MK, tag emdna-V10-00-51 662 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 663 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 664 when the asked item is not found
1224 665
1225 03-11-2014 MK, tag emdna-V10-00-50 666 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 667 - correct track creation by G4MoleculeGunMessenger
1227 668
1228 03-11-2014 MK, tag emdna-V10-00-49 669 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 670 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 671 - Correct a bug in G4MoleculeGun
1231 672
1232 28-10-2014 PA, tag emdna-V10-00-48 673 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 674 - correct compilation warnings
1234 675
1235 28-10-2014 PA, tag emdna-V10-00-47 676 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 677 - correct compilation warnings
1237 678
1238 28-10-2014 PA, tag emdna-V10-00-46 679 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 680 - correction in sources.cmake
1240 681
1241 28-10-2014 PA, tag emdna-V10-00-45 682 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 683 - retag to add LEPTS
1243 684
1244 28-10-2014 PA, tag emdna-V10-00-44 685 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 686 - add LEPTS
1246 687
1247 25-10-2014 MK, tag emdna-V10-00-43 688 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 689 - remove useless G4VITScheduler
1249 690
1250 25-10-2014 MK, tag emdna-V10-00-42 691 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 692 - correct warnings
1252 693
1253 24-10-2014 MK, tag emdna-V10-00-41 694 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 695 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 696 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 697 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 698 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 699 - G4ITFinder added
1259 - G4VITTrackHolder added 700 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 701 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 702 - code cleaned + useless classes removed
1262 703
1263 24-10-2014 MK, tag emdna-V10-00-40 704 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 705 - G4ITStepManager: remove verbose at closure time
1265 706
1266 21-10-2014 MK, tag emdna-V10-00-39 707 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 708 - try to solve crash at closure time
1268 709
1269 21-10-2014 MK, tag emdna-V10-00-38 710 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 711 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 712 table when deleted
1272 - update disclaimer 713 - update disclaimer
1273 714
1274 17-10-2014 MK, tag emdna-V10-00-37 715 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 716 - clean code
1276 - G4ITStepManager: one can ask why simulation 717 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 718 - remove useless verbose
1278 719
1279 17-10-2014 MK, tag emdna-V10-00-36 720 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 721 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 722 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 723 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 724
1284 10-10-2014 MK, tag emdna-V10-00-35 725 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 726 Avoid use of std::map at the application level in TimeStepAction
1286 727
1287 07-10-2014 MK, tag emdna-V10-00-34 728 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 729 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 730 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 731 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 732
1292 07-10-2014 MK, tag emdna-V10-00-33 733 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 734 Initialize G4ITStepManager in G4DNAChemistryManager
1294 735
1295 17-09-2014 MK, tag emdna-V10-00-32 736 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 737 Add G4ITStepManager + messenger
1297 Tag before architecture change 738 Tag before architecture change
1298 739
1299 12-07-2014 SI, tag emdna-V10-00-31 740 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 741 Removed obsolete class for electron excitation
1301 742
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 743 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 744 - Get rid of obsolete 'register' keyword in code.
1304 745
1305 05-06-2014 SI, tag emdna-V10-00-29 746 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 747 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D << 748 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 749 G4GenericIon usage
1309 - requires G4EMLOW6.39 750 - requires G4EMLOW6.39
1310 751
1311 04-06-2014 MK, tag emdna-V10-00-28 752 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 753 Remove directory management/include/impl
1313 Prepare for release 754 Prepare for release
1314 755
1315 04-06-2014 MK, tag emdna-V10-00-27 756 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 757 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 758 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 759 Avoid usage of molecule iterators as pointers
1319 760
1320 03-06-2014 SI, tag emdna-V10-00-26 761 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 762 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 763
1323 28-05-2014 VI, SI tag emdna-V10-00-25 764 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 765 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 766 Ionisation models switch to use angular generator
1326 interface 767 interface
1327 768
1328 12.05.2014 MK, tag emdna-V10-00-24 769 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 770 Try to remove warnings 4
1330 771
1331 12.05.2014 MK, tag emdna-V10-00-23 772 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 773 Try to remove warnings 3
1333 774
1334 12.05.2014 MK, tag emdna-V10-00-22 775 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 776 Try to remove warnings 2
1336 777
1337 12.05.2014 MK, tag emdna-V10-00-21 778 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 779 Try to remove warnings
1339 780
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 781 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx << 782 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 783 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 784 G4EMLOW6.38 needed
1344 785
1345 07-04-2014 SI tag emdna-V10-00-19 786 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 787 Changed faster method interpolation in
1347 G4DNABornIonisationModel << 788 G4DNABornIonisationModel
1348 789
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 790 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 791 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 792 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 793 Corrected order of inclusion of some headers and use of <>/"".
1353 794
1354 04-04-2014 MK tag emdna-V10-00-17 795 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 796 Try to solve warnings when G4VERBOSE is off
1356 797
1357 02-04-2014 MK tag emdna-V10 798 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 799 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 800
1360 02-04-2014 MK tag emdna-V10 801 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 802 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 803
1363 02-04-2014 MK tag emdna-V10 804 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 805 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 806 -> this part is withdrawn for now
1366 807
1367 02-04-2014 MK tag emdna-V10 808 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 809 - version 2 : try fixing the build error on mac
1369 810
1370 02-04-2014 MK tag emdna-V10 811 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 812 - version 1 : try to fix build errors and warnings on mac
1372 813
1373 02-04-2014 MK tag emdna-V10 814 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 815 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 816 (G4MemStat & G4MolecularConfiguration)
1376 817
1377 02-04-2014 MK tag emdna-V10 818 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 819 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 820 (problem coming from having as a friend class a template argument)
1380 821
1381 02-04-2014 MK tag emdna-V10 822 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla << 823 - try to fix build error on windows platform
1383 824
1384 01-04-2014 MK tag emdna-V10 825 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 826 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 827 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 828
1388 01-04-2014 MK tag emdna-V10 829 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 830 - reset CMakeLists.txt
1390 831
1391 01-04-2014 MK tag emdna-V10 832 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 833 - update chemistry
1393 834
1394 01-04-2014 SI tag emdna-V10-00-05 835 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 836 - Modified calculation of secondary kinetic for fast code
1396 837
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 838 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 839 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 840 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 841 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 842
1402 25-03-2014 VS, SI tag emdna-V10-00-03 843 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 844 - Added several clear() to vectors for MT
1404 845
1405 17-03-2014 SI tag emdna-V10-00-02 846 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc << 847 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 848 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 849 to be used with G4EMLOW6.36
1409 850
1410 12-12-2013 M.K tag emdna-V10-00-01 851 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 852 - G4DNAMolecularMaterial: Remove unused variable
1412 853
1413 12-12-2013 M.K tag emdna-V10-00-00 854 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to << 855 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 856 a model is not created at initialisation time
1416 857
1417 21-11-2013 V.I. tag emdna-V09-06-22 858 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 859 - G4ITStepProcessor2 - removed obsolete unused header
1419 860
1420 01-11-2013 M.K tag emdna-V09-06-21 861 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 862 - Correct incorrect singleton check introduced in previous tag
1422 863
1423 01-11-2013 M.K tag emdna-V09-06-20 864 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 865 - Prepare for release bis
1425 866
1426 01-11-2013 M.K tag emdna-V09-06-19 867 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 868 - Prepare for release
1428 869
1429 10-10-2013 M.K. tag emdna-V09-06-18 870 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 871 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 872
1432 06-10-2013 M.K. tag emdna-V09-06-17 873 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 874 - Same as before once again
1434 875
1435 03-10-2013 M.K. tag emdna-V09-06-16 876 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 877 - Same as before
1437 878
1438 03-10-2013 M.K. tag emdna-V09-06-15 879 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 880 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t << 881 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 882 by the user - stage 1
1442 883
1443 14-09-2013 M.Asai tag emdna-V09-06-14 884 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 885 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 886 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 887 with virtual keyword in G4VITProcess.
1447 888
1448 12-09-2013 M.K. tag emdna-V09-06-13 889 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 890 Correction of an inadvertent modification introduced in previous tag
1450 891
1451 12-09-2013 M.K. tag emdna-V09-06-12 892 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 893 Correct bound checks in G4ITManager.icc
1453 894
1454 16-08-2013 S.I. tag emdna-V09-06-11 895 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 896 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 897
1457 16-08-2013 S.I. tag emdna-V09-06-10 898 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 899 Added G4DNAIons
1459 900
1460 25-06-2013 M.K. tag emdna-V09-06-09 901 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 902 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet << 903 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 904 auto_ptr according to c++ std version
1464 905
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 906 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 907 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 908 for problem accidentally introduced in previous tag.
1468 909
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 910 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 911 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 912 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 913 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 914 compilation on Windows.
1474 915
1475 06-06-2013 S.I. tag emdna-V09-06- 916 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 917 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 918 Requires G4EMLOW version 6.33
1478 919
1479 25-05-2013 M.K. tag emdna-V09-06- 920 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 921 *Fix warning compilation in G4KDMap for specific gcc version
1481 922
1482 24-05-2013 M.K. tag emdna-V09-06- 923 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi << 924 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 925 but still not in usage
1485 926
1486 23-05-2013 M.K. tag emdna-V09-06- 927 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 928 * G4KDMap : try fix error on std:ceil call on windows
1488 929
1489 23-V09-06-03-05-2013 M.K. tag emd 930 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 931 * G4KDMap : used deque::iterator
1491 932
1492 933
1493 22-05-2013 M.K. tag emdna-V09-06- 934 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 935 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 936 * G4KDMap : pop out elements from map
1496 937
1497 22-05-2013 M.K. tag emdna-V09-06-00 938 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global << 939 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager << 940 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 941 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 942 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 943 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 944 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali << 945 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes << 946 intialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI << 947 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 948
1508 12-11-2012 M.K tag emdna-V09-05- 949 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 950 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 951 coverity warnings (rev 64993)
1511 952
1512 06-11-2012 G.Cosmo tag emdna-V09 953 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 954 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 955 for objects in maps...
1515 956
1516 04-11-2012 M.K. tag emdna-V09-05-33 957 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 958 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 959 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 960 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 961 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 962 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 963 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 964 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 965 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 966 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 967 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 968 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 969 add "else" before "if" statements and
1529 add variables to avoid ma 970 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 971 dna.files : update files (rev 64725)
1531 972
1532 03-11-2012 S.I. tag emdna-V09-05-32 973 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 974 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 975 classes
1535 976
1536 24-10-2012 M.K tag emdna-V09 977 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 978 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 979 (previously commented)
1539 980
1540 23-10-2012 M.K tag emdna-V09 981 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 982 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 983 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 984
1544 18-10-2012 M.K tag emdna-V09 985 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 986 Previous tag did not include history changes
1546 987
1547 18-10-2012 M.K tag emdna-V09 988 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 989 Remove warning
1549 990
1550 17-10-2012 M.K tag emdna-V09 991 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 992 Correct a typo from previous tag
1552 993
1553 17-10-2012 M.K tag emdna-V09 994 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 995 Correct information in headers
1555 Rename G4DNADiffustionControlledM 996 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 997 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 998
1558 01-10-2012 SI, P.Pater tag emdna-V09 999 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 1000 Force kinetic energy to zero for real killings in models.
1560 1001
1561 12-07-2012 G.Cosmo tag emdna-V09 1002 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 1003 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 1004 constants, in plan to remove implicit inclusion from globals.hh.
1564 1005
1565 11.07.2012 M.K tag emdna-V09 1006 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 1007 Correct warnings introduce in previous tag
1567 1008
1568 11.07.2012 M.K tag emdna-V09 1009 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 1010 Tag to be proposed
1570 1011
1571 25.06.2012 M.K tag emdna-V09-05-21 1012 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 1013 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 1014 Modify molecule's name
1574 << 1015
1575 21.06.2012 S.I tag emdna-V09-05-20 1016 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte << 1017 Update of electron elastic scattering low limit
1577 1018
1578 09.06.2012 M.K tag emdna-V09-05-19 1019 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 1020 Fixed shadowing
1580 1021
1581 04.06.2012 M.K tag emdna-V09-05-18 1022 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 1023 Add G4ITTrackingInteractivity + correct coverity warnings
1583 1024
1584 24.05.2012 M.K tag emdna-V09-05-17 1025 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 1026 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 1027
1587 23.05.2012 M.K tag emdna-V09-05-16 1028 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 1029 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 1030 G4ITStepManager
1590 Prevent call of destructor of G4I 1031 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 1032 G4DNAChemistryManager
1592 1033
1593 23.05.2012 M.K tag emdna-V09-05-15 1034 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 1035 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 1036 when one of its methods is called using a material that is
1596 not defined as a molecule 1037 not defined as a molecule
1597 1038
1598 21.05.2012 M.K tag emdna-V09-05-14 1039 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 1040 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 1041 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 1042 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 1043 Modify all models to use G4DNAMolecularMaterial
1603 1044
1604 14.05.2012 M.K tag emdna-V09-05-13 1045 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 1046 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 1047 Add G4DNADamages
1607 1048
1608 10.05.2012 M.K tag emdna-V09-05-12 1049 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 1050 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 1051 from UserReactionAction::EndProcessing()
1611 1052
1612 08.05.2012 M.K tag emdna-V09-05-11 1053 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 1054 Use inverseErf from CLHEP
1614 1055
1615 03.05.2012 M.K tag emdna-V09-05-10 1056 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 1057 Add erfc function for windows compilator (VC++)
1617 1058
1618 03.05.2012 M.K tag emdna-V09-05-09 1059 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 1060 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 1061
1621 03.05.2012 M.K tag emdna-V09-05-08 1062 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 1063 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 1064 Add new methods in G4ChemistryManager :
1624 - PushMolecule 1065 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 1066 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 1067 Reset() at the end of G4ITStepManager::Process()
1627 1068
1628 30.03.2012 M.K tag emdna-V09-05-07 1069 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 1070 Same as emdna-V09-05-06
1630 1071
1631 30.03.2012 M.K tag emdna-V09-05-06 1072 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 1073 1) Add separate navigator for synchronous tracking
1633 New classes : 1074 New classes :
1634 * G4ITTransportationManager 1075 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 1076 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 1077 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 1078 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 1079 3) Solve bugs with normal and brownian ITTransportation
1639 1080
1640 14.03.2012 M.K tag emdna-V09-05-05 1081 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 1082 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 1083 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 1084 -> become size_t + related changes
1644 * when a poststep process propo 1085 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 1086 => considered as a time, and transportation::computestep
1646 is used 1087 is used
1647 1088
1648 14.03.2012 M.K tag emdna-V09-05-04 1089 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 1090 Fix compilation warning
1650 1091
1651 14.03.2012 M.K tag emdna-V09-05-03 1092 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 1093 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 1094 Fix coverity warnings
1654 1095
1655 18.01.2012 S.I. tag emdna-V09 1096 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 1097 Removal of G4Water* classes in utils
1657 1098
1658 11.01.2012 M.K tag emdna-V09 1099 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 1100 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 1101 concerning the final position of the solvated electron
1661 using Sanche thermalization 1102 using Sanche thermalization
1662 1103
1663 16.12.2011 S.I tag emdna-V09 1104 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 1105 Updated source of cross section file for elastic scattering
1665 1106
1666 25.11.2011 M.K tag emdna-V09 1107 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 1108 Correct a typo in previous tag
1668 1109
1669 25.11.2011 M.K tag emdna-V09 1110 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 1111 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 1112 rather than center of mass in DNAMolecularReaction
1672 1113
1673 21.11.2011 M.K tag emdna-V09 1114 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 1115 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 1116 avoid conflicts with ROOT.
1676 Add short class description (comm 1117 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 1118 in JavaDoc style for doxygen use.
1678 1119
1679 21.11.2011 M.K tag emdna-V09 1120 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1121 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1122 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1123 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1124 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1125 when the time steps returned by the time stepper
1685 and the processes are equal 1126 and the processes are equal
1686 Improve verbose 1127 Improve verbose
1687 1128
1688 21.11.2011 M.K tag emdna-V09 1129 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1130 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1131 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1132 Correct verbose in new models & process
1692 1133
1693 18.11.2011 M.K tag emdna-V09 1134 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl << 1135 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1136 in G4DNAChemistryManager
1696 1137
1697 18.11.2011 M.K tag emdna-V09 1138 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1139 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1140 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1141 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1142
1702 15.11.2011 G.Cosmo tag emdna-V09 1143 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1144 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1145 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1146 Windows.
1706 Fixed compilation warning on icc 1147 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1148 G4MolecularDecayTable.cc
1708 1149
1709 10.11.2011 M.K. tag emdna-V09 1150 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1151 Fix a bug in G4DNATransformElectronModel
1711 1152
1712 10.11.2011 M.K. tag emdna-V09 1153 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1154 Clean classes for release
1714 Add comment into source 1155 Add comment into source
1715 Change name of some methods 1156 Change name of some methods
1716 Transform two independent singlet 1157 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1158 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1159 (ITStepMan + DNAChemMan)
1719 1160
1720 10.11.2011 M.K. tag emdna-V09 1161 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1162 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1163 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1164 the chemistryManager.
1724 1165
1725 09.11.2011 M.K. tag emdna-V09 1166 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1167 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1168 in G4TrackListNode.
1728 Simplify and improve the use of d 1169 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1170 Add more convenient methods in userReactionAction
1730 1171
1731 08.11.2011 M.K. tag emdna-V09 1172 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1173 Fix coverity warnings
1733 1174
1734 07.11.2011 M.K. tag emdna-V09 1175 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1176 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1177 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1178 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1179 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1180 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1181 Clean classes for release
1741 1182
1742 03.11.2011 M.K. tag emdna-V09 1183 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1184 Add dna libs in sources.cmake
1744 1185
1745 03.11.2011 M.K. tag emdna-V09 1186 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1187 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1188 Add dna includes in sources.cmake
1748 << 1189
1749 01.11.2011 M.K. tag emdna-V09 1190 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1191 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1192 G4ITTransportation, G4TrackList on Windows
1752 1193
1753 01.11.2011 G.Cosmo 1194 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1195 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1196 updated GNUMakefiles to have it properly defined.
1756 1197
1757 31.10.2011 M.K tag emdna-V09-04-35 1198 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1199 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1200 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives << 1201 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1202 Fix windows compilation errors & warnings
1762 1203
1763 28.10.2011 M.K tag emdna-V09-04-34 1204 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1205 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1206 Plus remove obsolete G4Exception
1766 1207
1767 28.10.2011 M.K tag emdna-V09-04-33 1208 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1209 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1210 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1211 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1212 to models
1772 1213
1773 27.10.2011 M.K tag emdna-V09-04-32 1214 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1215 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1216 coverity errors.
1776 1217
1777 26.10.2011 M.K tag emdna-V09-04-31 1218 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared << 1219 change std::shared_ptr to CLHEP::shared_ptr
1779 1220
1780 26.10.2011 M.K. tag emdna-V09-04-30 1221 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1222 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1223 G4MolecularConfiguration::fManager added
1783 1224
1784 26.10.2011 M.K. tag emdna-V09-04-29 1225 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1226 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1227 Add electron solvatation process & models
1787 Add chemical processes 1228 Add chemical processes
1788 1229
1789 21.10.2011 M.K. tag emdna-V09-04-28 1230 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model << 1231 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1232 emdna-V09-04-24
1792 << 1233
1793 21.10.2011 M.K. tag emdna-V09-04-27 1234 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1235 CMake fixes from emdna-V09-04-24
1795 << 1236
1796 21.10.2011 M.K. tag emdna-V09-04-26 1237 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous << 1238 Bug fixes and new dev from the previous tag
1798 1239
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1240 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1241 Extension of ionisation by HZE proposed by Z. Francis
1801 1242
1802 20.10.2011 M.K. tag emdna-V09-04-24 1243 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1244 Bug fixes and new dev from the previous tag
1804 << 1245
1805 07.10.2011 M.K. tag emdna-V09-04-23 1246 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files << 1247 First tag with "molecules" files
1807 << 1248
1808 07.10.2011 M.K. tag emdna-V09-04-22 1249 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1250 Add molecules+management directory
1810 First tag with "management" files 1251 First tag with "management" files
1811 1252
1812 09.09.2011 G.Folger tag emdna-V09 1253 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer << 1254 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc << 1255 G4DNAMoleculeManager.cc
1815 1256
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1257 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1258 Updated sources.make and CMakeLists.txt
1818 1259
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1260 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1261 Reorganized whole architecture.
1821 1262
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1263 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1264 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1265 if no deexcitation)
1825 1266
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1267 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1268 Changed code (em0006) numbering for G4Exception
1828 1269
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1270 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1271 Switched to new G4Exception syntax
1831 1272
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1273 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1274 Added enhanced debug information in ionisation models
1834 1275
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1276 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1277 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1278
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1279 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1280 Removed obsolete information.
1840 1281
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1282 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1283 Updated deexcitation initialization in ionization models.
1843 1284
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1285 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1286 Coverity warnings removal
1846 1287
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1288 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1289 - Increased energy limits for
1849 G4DNAChargeIncrease 1290 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1291 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1292 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1293 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1294 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade << 1295 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1296 of ionisation classes for Auger e-
1856 1297
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1298 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1299 Further compilation warnings removal
1859 1300
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1301 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1302 Compilation warnings removal
1862 1303
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1304 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1305 added Atomic Deexcitation to Ionisation Models
1865 1306
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1307 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1308 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1309 G4DNADingfelderChargeIncreaseModel.cc.
1869 1310
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1311 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1312 Changed process sub-type numbering.
1872 1313
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1314 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1315 Fixed coverity warnings.
1875 1316
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1317 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1318 Updated all models for handling of variable density.
1878 1319
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1320 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1321 Addition of dependencies to configuration files.
1881 1322
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1323 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1324 Addition of all files.
1884 1325
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1326 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1327 Creation of dna sub-package in electromagnetic category.