| Geant4 Cross Reference |
1 # Category emdna History << 1 =========================================================
2 << 2 Geant4 - an Object-Oriented Toolkit for Simulation in HEP
3 See `CONTRIBUTING.rst` for details of **requir << 3 =========================================================
4 which **must** added in reverse chronological << 4
5 It must **not** be used as a substitute for wr << 5 Category History file
6 << 6 ---------------------
7 ---------------------------------------------- << 7 This file should be used by G4 developers and category coordinators
8 << 8 to briefly summarize all major modifications introduced in the code
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) << 9 and keep track of all category-tags.
10 - missing value in DNA PTB Ionization Structur << 10 It DOES NOT substitute the CVS log-message one should put at every
11 - missing GetMaterial() in DNA PTB Excitation << 11 committal in the CVS repository !
12 << 12
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) << 13 ----------------------------------------------------------
14 - Modified the molecule names of OH, HO2, O in << 14 * Reverse chronological order (last date on top), please *
15 Each molecule configuration has a molecule d << 15 ----------------------------------------------------------*
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with <<
35 of std::function in G4OctreeFinder. <<
36 <<
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) <<
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with <<
51 Added missing declarations for TG4MoleculeSh <<
52 Based on [GitHub PR#69](https://github.com/G <<
53 <<
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) <<
106 - Use G4FindDataDir to access data libraries i <<
107 <<
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) <<
109 - correct fastercode section for dna opt6 <<
110 <<
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) <<
112 - correct scavenger counter for oxygen <<
113 <<
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) <<
115 - Fixed the K shell bug in G4DNARuddIonisation <<
116 <<
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) <<
118 - improved equilibrium processes, introduced G <<
119 <<
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) <<
121 - In navigation classes, removed references to <<
122 which is now deprecated. <<
123 <<
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) <<
125 - Removed references to unused G4GRSSolid and <<
126 <<
127 ## 2023-08-29 (emdna-V11-01-18) <<
128 - Fix minor/obvious Coverity issues <<
129 <<
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) <<
131 - Apply core clang-tidy fixes plus those for <<
132 - Cons/destructor modernization <<
133 - Readability and logic for conditionals/boo <<
134 <<
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) <<
136 - Apply patch from [GitHub PR 58](https://gith <<
137 - Use std::erfc to avoid precision loss <<
138 - Remove unused header <<
139 <<
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) <<
141 - minor correction for DNA material in option6 <<
142 <<
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) <<
144 - use analytical method for DNA material in op <<
145 <<
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 <<
147 - G4DNARuddIonisationExtendedModel - model re- <<
148 threads, applicable for scaled energy interv <<
149 an ion data is not available proton x-sectio <<
150 used, sampling of delta-electron is done usi <<
151 <<
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) <<
153 - Modified DNA cross section file name to new <<
154 <<
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) <<
156 - Add DNA cross section to dna_option6 <<
157 <<
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) <<
159 - Fix Compilation warnings on XCode <<
160 <<
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) <<
162 - correct the initial values of G4DNAEventSche <<
163 <<
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) <<
165 - add time structure (pulsed beam) to water ra <<
166 <<
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) <<
168 - correct KDTree bug <<
169 <<
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) <<
171 - icsd physicslist: deleted unused model, <<
172 - Apdated RegisterModel function with new stru <<
173 - added model data to G4DNAMaterialManager sin <<
174 <<
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) <<
176 - Fixed compilation warning on macOS/XCode for <<
177 in G4DNAVacuumModel::Initialise(). <<
178 <<
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) <<
180 - Introduced G4DNAMaterialManager to manage av <<
181 and keeps DNA cross section data in one thread <<
182 - minor change in G4VDNAModel <<
183 <<
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) <<
185 - reorganize multiple material model of PTB mo <<
186 G4VDNAModel plays like a data layer for multip <<
187 The concrete models are independent of G4DNAMo <<
188 <<
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) <<
190 - replaced string to material index and clean <<
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, <<
192 G4DNAPTBExcitationStructure) - PTB models <<
193 - added material pointer members for each conc <<
194 - removed unused objects (G4DataVector()) <<
195 <<
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) <<
197 - clean G4DNAModelInterface file for the model <<
198 <<
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) <<
200 - fix coverity of G4DNARuddIonisationExtendedM <<
201 (Uninitialized scalar variable) from cand1 ana <<
202 <<
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 <<
204 - G4DNARuddIonisationExtendedModel - fixed com <<
205 radioactive decay module - before this upd <<
206 only 5 ions have data needed for this mode <<
207 model scaling relation to the carbon ion i <<
208 no data; low-energy limit is used now more <<
209 but not killed, because they may have radi <<
210 lines are removed from the class <<
211 <<
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) <<
213 - Fixed more compilation warnings for implicit <<
214 <<
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) <<
216 - delete unused tests in dna (G4DNAProcessTest <<
217 <<
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) <<
219 - Fixed compilation warnings for implicit type <<
220 <<
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 <<
222 - G4DNAUeharaScreenedRutherfordElasticModel - <<
223 low and high energy limit for the model; r <<
224 <<
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) <<
226 - Fix Coverity issues for ref-09 <<
227 <<
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) <<
229 - minor correction of IRT-syn model (chemistry <<
230 after 1 ps. <<
231 <<
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- <<
233 - Add nitrogen models from PTra code <<
234 <<
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) <<
236 - Fixed minor mistake of file name in G4DNARPW <<
237 - Added protection for HighEnergyLimit/LowEner <<
238 G4DNARPWBAExcitationModel <<
239 <<
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) <<
241 - Fixed compilation warnings on Intel/icx comp <<
242 but not used in G4ITNavigator2. <<
243 <<
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) <<
245 - Fix user's report for IRT model. <<
246 If the first IRTSampling won't give any rea <<
247 <<
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) <<
249 - Fix Coverity static analysis for ref-08 <<
250 uninit_member in G4DNAMillerGreenExcitationMo <<
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI <<
252 Use auto & instead of auto : G4ITFinder, G4DN <<
253 <<
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) <<
255 - Resolve dependency inconsistencies : <<
256 dna/management/include/G4ChemicalMoleculeF <<
257 dna/management/include/G4UserMeshAction.hh <<
258 dna/management/include/G4OctreeFinder.hh i <<
259 <<
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) <<
261 - Partially resolve dependency inconsistencies <<
262 - NB: cannot be resolved fully without intro <<
263 G4emdna-man, G4emdna-molman, G4emdna-utils <<
264 <<
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) <<
266 - Define G4CT_MAX_COUNT for changing "compile <<
267 errors on NVHPC compiler. <<
268 <<
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 <<
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo <<
271 cleanup according to the recent G4VEmProce <<
272 headers are moved to source; C++11 keyward <<
273 <<
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) <<
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela <<
276 G4DNACPA100IonisationModel.cc, G4DNAChampion <<
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo <<
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx <<
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis <<
280 G4DNASancheExcitationModel.cc : <<
281 use G4FindDataDir("G4LEDATA") to find datase <<
282 <<
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) <<
284 - correct DNA ion definitions in G4DNARuddIoni <<
285 <<
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) <<
287 - G4Octree : fixed Coverity warning. <<
288 <<
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) <<
290 - update data structure to improve performance <<
291 <<
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) <<
293 - G4ITTransportation: fixed misuse of bitwise <<
294 <<
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) <<
296 - Added missing headers. <<
297 <<
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) <<
299 - change the scavenging filter of the IRT beyo <<
300 <<
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) <<
302 - Add localthread for fUse of G4VMoleculeCount <<
303 <<
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa <<
305 - Incorporation of model based on RPWBA to tra <<
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI <<
307 <<
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) <<
309 - add UserBrownianAction in G4DNABrownianTrans <<
310 G4DNAMolecularDissociation <<
311 - replace G4int by int64_t for width integer t <<
312 - add fResetScavenger in G4SchedulerMessenger <<
313 <<
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) <<
315 - save local instances for recurrent access to <<
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo <<
317 G4DNARuddIonisationModel <<
318 - use G4Pow and G4Log instead of std::pow and <<
319 - inside G4DNARuddIonisationExtendedModel comm <<
320 inside G4DNAGenericIonsManager <<
321 <<
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) <<
323 - Debug the report #2235 which might be relate <<
324 - Clean code <<
325 - Delete G4ITFinder.cc <<
326 <<
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) <<
328 - save local instances for recurrent access to <<
329 G4DNADingfelderChargeDecreaseModel and G4DNADi <<
330 - use G4Pow and G4Log instead of std::pow and <<
331 <<
332 ## 2022-03-18 SI (emdna-V11-00-10) <<
333 - add protection in G4DNACPA100IonisationModel <<
334 <<
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) <<
336 - remove macro commands to control the chemist <<
337 (creating models in G4SchedulerMessenger can m <<
338 - add flag OctreeFinder in IRT_syn's Initializ <<
339 <<
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) <<
341 - add macro commands to control the chemistry <<
342 parameters including the chemical molecules an <<
343 <<
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) <<
345 - optimize IRT-syn model, use reaction radius <<
346 - delete G4VReactionType, G4DNAReactionTypeMan <<
347 G4DNAPartiallyDiffusionControlled <<
348 - delete G4DNAIRT_geomtries <<
349 <<
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) <<
351 - `G4ITTransportation`: Make `PrepareState` mo <<
352 - `G4DNAPolyNucleotideReactionProcess`: <<
353 - Move `PrepareState` and `State` macros int <<
354 - Make `PrepareState` more function-like, ex <<
355 - Move variable `pMoleculeA` under `G4VERBOS <<
356 <<
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) <<
358 - add the condition of water material for the <<
359 warning in G4DNAMolecularDissociation::DecayIt <<
360 <<
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) <<
362 - modify the macro in G4Molecule.cc and G4ITTy <<
363 <<
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) <<
365 - Prefer pointer to `const G4Material` if poss <<
366 <<
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) <<
368 - Remove useless `const_cast` of `G4VSensitive <<
369 <<
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) <<
371 - add G4DNAPolyNucleotideReactionProcess, G4VD <<
372 files for DNA damage applications <<
373 <<
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) <<
375 - Change to new Markdown History format <<
376 <<
377 --- <<
378 <<
379 # History entries prior to 11.0 <<
380 <<
381 8-11-2021, H. Tran, emdna-V10-07-15 <<
382 - corrected Circular dependencies for mesoscop <<
383 - corrected the problem in IRT <<
384 <<
385 4-11-2021, H. Tran, emdna-V10-07-14 <<
386 - define a G4FakeParticleID::fLastValue in the <<
387 delete G4FakeParticleID.cc, <<
388 solve arithmetic problems, <<
389 Added new mesoscopic model for dna chemistry <<
390 <<
391 21-10-2021, W.G.Shin, emdna-V10-07-13 <<
392 - Added a virtual classes for DNA geometry - G <<
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul <<
394 G4ITModelProcessor, G4Sch <<
395 G4DNAMolecularReactionTab <<
396 <<
397 23-09-2021, A. Ribon, emdna-V10-07-12 <<
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit <<
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh <<
400 G4DNAChargeIncrease, G4DNAElectronSolvation, <<
401 G4DNASecondOrderReaction, G4DNAElectronHoleR <<
402 G4DNABrownianTransportation : replaced hardw <<
403 with enum values introduced in the new class <<
404 <<
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 <<
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati <<
407 G4VLEPSModel - updated interfaces to G4Physi <<
408 <<
409 16-07-2021, D. Sakata, emdna-V10-07-10 <<
410 - Fixed initialization error in G4DNAELSEPAEla <<
411 <<
412 28-06-2021, G. Cosmo, emdna-V10-07-09 <<
413 - Fixed compilation error in G4ITMultiNavigato <<
414 enabled. <<
415 <<
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 <<
417 - Added new classes G4DNADiracRMatrixExcitatio <<
418 G4DNAQuinnPlasmonExcitatio <<
419 G4DNARelativisticIonisatio <<
420 G4DNAPlasmonExcitation <<
421 - Modified G4DNAELSEPAElasticModel for gold <<
422 <<
423 9-05-2021, H.Tran, tag emdna-V10-07-07 <<
424 - Add IRT-syn model <<
425 <<
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 <<
427 - Migrate build to modular CMake API <<
428 <<
429 27-04-2021, H.Tran, tag emdna-V10-07-05 <<
430 - G4DNAElectronHoleRecombination: added Octree <<
431 - G4DNABrownianTransportation: modified AlongS <<
432 - added OctreeFinder and IRTUtils <<
433 <<
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 <<
435 - G4DNABornAngle, G4DNARuddAngle - updated pri <<
436 <<
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 <<
438 - Move DNA-related Unit Tests from lowenergy/t <<
439 <<
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 <<
441 - Fixed dependency on g4tools, now moved to ex <<
442 <<
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 <<
444 - G4DNAElectronHoleRecombination <<
445 Dissociation channel of electron-hole recomb <<
446 G4EmDNAChemistry, _option1, _option2, _optio <<
447 - G4DNAWaterDissociationDisplacer <<
448 Added the fragment displacement for new diss <<
449 <<
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 <<
451 - Fix thread contention on mutable data in G4D <<
452 help resolving observed crashes in MT runs. <<
453 Some code cleanup. <<
454 <<
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 <<
456 - G4DNAMolecularMaterial - removed commented l <<
457 - History file fixed <<
458 <<
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 <<
460 - G4DNAMolecularMaterial - attempt to fix nigh <<
461 in chem6 example - do not delete instance of <<
462 <<
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 <<
464 - Added dependency on analysis/g4tools in GNUm <<
465 required after analysis update (analysis-V10 <<
466 <<
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 <<
468 - Fixed coverity warning <<
469 <<
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 <<
471 - Fixed coverity warnings <<
472 - Fix of IRT bug <<
473 (protection for the crash induced by empty re <<
474 <<
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 <<
476 - Add missing G4analysismng module dependency <<
477 <<
478 20-05-20: W.G.Shin emdna-V10-06-05 <<
479 - Revised displacement of OH radicals of B1A1 <<
480 based on momentum conservation in G4DNAWaterDi <<
481 - Added missing History <<
482 <<
483 26-04-20: W.G.Shin emdna-V10-06-04 <<
484 - Fixed coverity test <<
485 <<
486 15-04-20: G.Cosmo emdna-V10-06-03 <<
487 - G4MoleculeDefinition: copy constructor and a <<
488 are not allowed (as for G4ParticleDefinition <<
489 <<
490 19-02-20: W.G.Shin emdna-V10-06-02 <<
491 - Fixed memory issue on G4DNAMolecularReaction <<
492 - Revised headeres of IRT classes <<
493 <<
494 12-02-20: W.G.Shin emdna-V10-06-01 <<
495 - Added protections floating point exception i <<
496 <<
497 10-01-20: W.G.Shin emdna-V10-06-00 <<
498 - Added classes for IRT <<
499 - Added features in management classes for IRT <<
500 G4ITModelProcessor ...) <<
501 - Added features in G4DNAMolecularReactionTabl <<
502 - Added molecules of Plante et al. (2017) (Oxy <<
503 <<
504 15-11-19: G.Cosmo emdna-V10-05-11 <<
505 - Fixed cases of implicit type conversions fro <<
506 <<
507 8-11-19: HT, tag emdna-V10-05-10 <<
508 - Fixed the exception divide by zero of diffus <<
509 G4DNABrownianTransportation::AlongStepGetPhysi <<
510 for the case of static molecules (DNA) (diffus <<
511 <<
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 <<
513 - Enabled G4ItNavigator{1,2} to flag if it enc <<
514 of external physical volume (meant for adapt <<
515 <<
516 19-10-19: WGS, SI, tag emdna-V10-05-08 <<
517 - Added new model G4DNAELSEPAElasticModel <<
518 <<
519 11-10-19: WGS, SI, tag emdna-V10-05-07 <<
520 - G4DNAOneStepThermalizationModel.* : <<
521 added Kreipl and Meesungnoen amorphous ice mod <<
522 - G4DNAWaterDissociationDisplacer* : updated <<
523 <<
524 03-06-2019, MK, tag emdna-V10-05-06 <<
525 - Fix GCC9 warnings <<
526 <<
527 26-03-2019, HT, tag emdna-V10-05-05 <<
528 - Added G4DNAMolecule <<
529 <<
530 10-03-2019, MK, tag emdna-V10-05-04 <<
531 - Fix reaction site issue <<
532 - Chemistry: clarify pointer ownership, clean <<
533 <<
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 <<
535 - Fixed typos in printouts in G4MolecularConfi <<
536 G4VITRestProcess, G4DNAElectronHoleRecombina <<
537 <<
538 18-01-2019, HT, tag emdna-V10-05-02 <<
539 - Transformed the exception into warning in G4 <<
540 <<
541 28-12-2018, MK, tag emdna-V10-05-01 <<
542 DEV-300 : G4DNAChemistryManager clarify pointe <<
543 <<
544 05-01-2019, HT, tag emdna-V10-05-00 <<
545 - moved the checking position of track status <<
546 in G4ITStepProcessor::SetInitialStep() <<
547 <<
548 01-09-2018, SI, tag emdna-V10-04-10 <<
549 renamed tag <<
550 <<
551 01-09-2018, SI, tag emdna-v10-04-09 <<
552 - bugzilla 2084 <<
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id <<
554 <<
555 30-07-2018, SI, tag emdna-V10-04-08 <<
556 - included upper energy limit of models (2) <<
557 <<
558 29-07-2018, SI, tag emdna-V10-04-07 <<
559 - included upper energy limit of models <<
560 <<
561 01-07-2018, SI, tag emdna-V10-04-06 <<
562 - added protection in Auger emission <<
563 <<
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 <<
565 - updated Si mass in G4DNAGenericIonsManager <<
566 <<
567 22-06-2018, SI tag emdna-V10-04-04 <<
568 - fixed warnings in lepts models <<
569 <<
570 14-05-2018, SI tag emdna-V10-04-03 <<
571 - chemistry update by Mathieu <<
572 <<
573 01-05-2018, SI tag emdna-V10-04-02 <<
574 - chemistry update by Mathieu <<
575 <<
576 09-02-2018, M.Asai tag emdna-V10-04-01 <<
577 - G4DNAMolecularMaterial.cc : <<
578 GetDensityTableFor() and GetNumMolPerVolTabl <<
579 at G4State_Init rather than G4State_Idle. <<
580 - Co-works with run-V10-04-01 and global-V10-0 <<
581 <<
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 <<
583 - Fixed self-consistency in headers (missing # <<
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff <<
585 Fixed spurious definition of G4IT namespace <<
586 Thanks to Raphael Isemann for reporting thes <<
587 <<
588 01-11-2017, MK tag emdna-V10-03-30 <<
589 - remove models/test directory <<
590 <<
591 31-10-2017, JA ( tag missing ) <<
592 - G4KDNode.hh: Add missing included file - nee <<
593 16
594 16-08-2017, SI tag emdna-V10-03-28 17 16-08-2017, SI tag emdna-V10-03-28
595 - updated variable types in models 18 - updated variable types in models
596 19
597 10-08-2017, SI tag emdna-V10-03-27 20 10-08-2017, SI tag emdna-V10-03-27
598 - test 21 - test
599 22
600 10-08-2017, SI tag emdna-V10-03-26 23 10-08-2017, SI tag emdna-V10-03-26
601 - same as previous 24 - same as previous
602 25
603 09-08-2017, SI tag emdna-V10-03-25 26 09-08-2017, SI tag emdna-V10-03-25
604 - same as previous 27 - same as previous
605 28
606 09-08-2017, SI tag emdna-V10-03-24 29 09-08-2017, SI tag emdna-V10-03-24
607 - G4DNAEmfietzoglouIonisationModel: added prot 30 - G4DNAEmfietzoglouIonisationModel: added protection for out of bound access
608 31
609 03-08-2017, VI tag emdna-V10-03-23 32 03-08-2017, VI tag emdna-V10-03-23
610 - G4DNAExcitation, G4DNAIonisation - make cohe 33 - G4DNAExcitation, G4DNAIonisation - make coherent model initialisation
611 34
612 28-07-2017, SI, tag emdna-V10-03-22 35 28-07-2017, SI, tag emdna-V10-03-22
613 - added stationary mode flag to CPA100 ionisat 36 - added stationary mode flag to CPA100 ionisation.
614 37
615 04-07-2017, SI, tag emdna-V10-03-21 38 04-07-2017, SI, tag emdna-V10-03-21
616 - added tagging of atom. deexc. products in io 39 - added tagging of atom. deexc. products in ionisation models.
617 40
618 31-05-2017, SM, tag emdna-V10-03-20 41 31-05-2017, SM, tag emdna-V10-03-20
619 - Correct windows issues with path of diff. CS 42 - Correct windows issues with path of diff. CS data file.
620 43
621 31-05-2017, SI, tag emdna-V10-03-19 44 31-05-2017, SI, tag emdna-V10-03-19
622 - roll-back (Windows issues with previous tag) 45 - roll-back (Windows issues with previous tag)
623 46
624 24-05-2017, SI, tag emdna-V10-03-18 47 24-05-2017, SI, tag emdna-V10-03-18
625 - added tagging of atom. deexc. products in io 48 - added tagging of atom. deexc. products in ionisation models.
626 49
627 11-05-2017, VI tag emdna-V10-03-17 50 11-05-2017, VI tag emdna-V10-03-17
628 - fix for gcc 7.1 warnings in G4DNACrossSectio << 51 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
629 52
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 53 10-05-2017, NL, MK, SI, tag emdna-V10-03-16
631 - fix for gcc 7.1 warnings in G4DNACrossSectio << 54 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
632 55
633 03-05-2017, SM, tag emdna-V10-03-15 56 03-05-2017, SM, tag emdna-V10-03-15
634 - add the new G4DNADummyModel and allow the co << 57 - add the new G4DNADummyModel and allow the combination of G4VEmModel and G4VDNAModel in G4DNAModelInterface.
635 58
636 27-04-2017, SM, tag emdna-V10-03-14 59 27-04-2017, SM, tag emdna-V10-03-14
637 - correct small typo mistakes. 60 - correct small typo mistakes.
638 61
639 27-04-2017, SM, tag emdna-V10-03-13 62 27-04-2017, SM, tag emdna-V10-03-13
640 - update Models/G4DNAModelInterface to correct 63 - update Models/G4DNAModelInterface to correctly use G4DNAMolecularMaterial
641 64
642 10-03-2017, MK, tag emdna-V10-03-12 65 10-03-2017, MK, tag emdna-V10-03-12
643 - update utils/GNUmakefile 66 - update utils/GNUmakefile
644 67
645 13-02-2017, MK, tag emdna-V10-03-11 68 13-02-2017, MK, tag emdna-V10-03-11
646 - G4DNAMolecularMaterial: update doxygen doc 69 - G4DNAMolecularMaterial: update doxygen doc
647 70
648 13-02-2017, MK, tag emdna-V10-03-10 71 13-02-2017, MK, tag emdna-V10-03-10
649 - G4DNAMolecularMaterial: << 72 - G4DNAMolecularMaterial:
650 remove newly introduced methods, add fatal e 73 remove newly introduced methods, add fatal exception if used
651 add doxygen documentation 74 add doxygen documentation
652 75
653 10-02-2017, MK, tag emdna-V10-03-09 76 10-02-2017, MK, tag emdna-V10-03-09
654 - Introducing G4PhysChemIO 77 - Introducing G4PhysChemIO
655 - Move call to G4TrackList::Pop(track) from G4 78 - Move call to G4TrackList::Pop(track) from G4ITTrackingManager
656 to G4ITTrackHolder. And make sure track stat 79 to G4ITTrackHolder. And make sure track status is set to fStopAndKill
657 when G4ITTrackHolder::PushToKill is called. 80 when G4ITTrackHolder::PushToKill is called.
658 81
659 09-02-2017, MK, tag emdna-V10-03-08 82 09-02-2017, MK, tag emdna-V10-03-08
660 - G4KDNode.hh: remove unused G4ThreeVector hea 83 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation 84 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t 85 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization 86 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K 87 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665 88
666 24-01-2017, SM, tag emdna-V10-03-07 89 24-01-2017, SM, tag emdna-V10-03-07
667 - add a ifdef to remove a warning (windows onl 90 - add a ifdef to remove a warning (windows only) related to the use of several levels of map.
668 91
669 23-01-2017, SM, tag emdna-V10-03-06 92 23-01-2017, SM, tag emdna-V10-03-06
670 - add missing G4DNAModelInterface files (.hh a 93 - add missing G4DNAModelInterface files (.hh and .cc) to the source.cmake
671 94
672 23-01-2017, SM CV, tag emdna-V10-03-05 95 23-01-2017, SM CV, tag emdna-V10-03-05
673 - add new G4DNAPTB* classes and the structure 96 - add new G4DNAPTB* classes and the structure of the new material management system
674 97
675 14-01-2017, MK, tag emdna-V10-02-37 98 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingMan 99 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction 100 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Schedule << 101 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679 102
680 28-12-2016, SI, tag emdna-V10-03-04 103 28-12-2016, SI, tag emdna-V10-03-04
681 - extended upper energy limit of protons for << 104 - extended upper energy limit of protons for
682 G4DNARuddIonisationExtendedModel 105 G4DNARuddIonisationExtendedModel
683 106
684 27-12-2016, SI, tag emdna-V10-03-03 107 27-12-2016, SI, tag emdna-V10-03-03
685 - updated references of CPA100 classes 108 - updated references of CPA100 classes
686 109
687 23-12-2016, SI, tag emdna-V10-03-02 110 23-12-2016, SI, tag emdna-V10-03-02
688 - updated sources.cmake 111 - updated sources.cmake
689 112
690 23-12-2016, SI, tag emdna-V10-03-01 113 23-12-2016, SI, tag emdna-V10-03-01
691 - commit of first CPA100 classes, part 2 114 - commit of first CPA100 classes, part 2
692 115
693 21-12-2016, SI, tag emdna-V10-03-00 116 21-12-2016, SI, tag emdna-V10-03-00
694 - commit of first CPA100 classes 117 - commit of first CPA100 classes
695 118
696 27-11-2016, MK, tag emdna-V10-02-36 119 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 120 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 121 - G4DNADamages -> G4DNADamage
699 122
700 17-11-2016, MK, tag emdna-V10-02-35 123 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 124 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 125
703 16-11-2016, MK, tag emdna-V10-02-34 126 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat << 127 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 128 displacement types can be thread shared
706 - G4TrackState: Move implementation of static << 129 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 130 G4VTrackStateID::Create() to cc file - windows crash
708 131
709 15-11-2016, MK, tag emdna-V10-02-33 132 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 133 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 134
712 14-11-2016, MK, tag emdna-V10-02-32 135 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t << 136 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 137 windows platforms
715 138
716 14-11-2016, MK, tag emdna-V10-02-31 139 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: << 140 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 141 tag init constexpr factor with number rather than expression
719 142
720 14-11-2016, MK, tag emdna-V10-02-30 143 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 144 - Use CLHEP::pi instead of M_PI
722 145
723 14-11-2016, MK, tag emdna-V10-02-29 146 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 147 - Correct bracket enclosing
725 148
726 14-11-2016, MK, tag emdna-V10-02-28 149 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 150 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 151 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 152 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 153 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 154 - Adds and use G4CTCounter
732 155
733 02-11-2016, MK, tag emdna-V10-02-27 156 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom << 157 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 158 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo << 159 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety << 160 computeStep & computeSafety
738 161
739 07-08-2016, SI, tag emdna-V10-02-26 162 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 163 - added stationnary mode to sub-excitation electron processes
741 164
742 23-06-2016, MK 165 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 166 - G4Scheduler: move G4IosFlagsSaver to Process()
744 167
745 3-06-2016, MK, tag emdna-V10-02-25 168 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 169 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 170 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 171 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 172
750 3-06-2016, MK, tag emdna-V10-02-24 173 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 174 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 175 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 176 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 177 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 178 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 179 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc << 180 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 181 model used for another part than e-
759 182
760 1-06-2016, MK, tag emdna-V10-02-23 183 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 184 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 185 logic for interface with physics models
763 186
764 31-05-2016, MK, tag emdna-V10-02-22 187 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 188 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 189
767 28-05-2016, MK, tag emdna-V10-02-21 190 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 191 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 192 one of the previous tags
770 193
771 19-05-2016, MK, tag emdna-V10-02-20 194 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 195 - G4ITNavigator: remove warnings on gcc6.1
773 196
774 17-05-2016, MK, tag emdna-V10-02-19 197 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 198 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 199 correct model and process names for solvation
777 200
778 12-05-2016, MK, tag emdna-V10-02-18 201 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: << 202 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 203 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne << 204 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 205 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 206 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 207 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 208 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 209 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim << 210 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 211 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 212 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 213 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 214 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 215 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 216 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 217 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 218 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 219 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 220 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 221 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 222 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 223 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 224 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 225 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv << 226 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 227 created; otherwise, the primary electron is killed
805 228
806 30-04-2016, MK, tag emdna-V10-02-17 229 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 230 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 231
809 30-04-2016, MK, tag emdna-V10-02-16 232 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 233 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p << 234 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 235 unregistered molecule definition
813 236
814 22-04-2016, MK, tag emdna-V10-02-15 237 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 238 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 239 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 240
818 22-04-2016, MK, tag emdna-V10-02-14 241 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit << 242 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 243 remove usage of internal energy boundaries
821 244
822 19-03-2016, SI, tag emdna-V10-02-13 245 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 246 - added nrj extensibility to SR and USR models
824 247
825 11-03-2016, SI, tag emdna-V10-02-12 248 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 249 -roll back to files in emdna-V10-02-06
827 250
828 10-03-2016, SI, tag emdna-V10-02-11 251 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 252 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 253 and G4DNAScreenedRutherfordElasticModel
831 254
832 10-03-2016, SI, tag emdna-V10-02-10 255 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 256 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 257
835 07-03-2016, SI, tag emdna-V10-02-09 258 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 259 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 260 of G4DNAUeharaScreenedRutherfordElasticModel
838 261
839 06-03-2016, SI, tag emdna-V10-02-08 262 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 263 -removed useless G4Pow declaration
841 264
842 04-03-2016, SI, tag emdna-V10-02-07 265 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 266 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 267 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 268
846 02-03-2016, SI, tag emdna-V10-02-06 269 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 270 -replaced std::exp by G4Exp
848 271
849 02-03-2016, SI, tag emdna-V10-02-05 272 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 273 -replaced std::exp by G4Exp
851 274
852 02-03-2016, SI, tag emdna-V10-02-04 275 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 276 -replaced std::exp by G4Exp
854 277
855 01-03-2016, SI, tag emdna-V10-02-03 278 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 279 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 280 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 281 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 282 by S. Okada (KEK, JP)
860 283
861 17-02-2016, MK, tag emdna-V10-02-02 284 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 285 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 286
864 16-12-2015, SI, tag emdna-V10-02-01 287 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: << 288 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 289 added protection on energy for interpolation method change
867 290
868 16-12-2015, SI, tag emdna-V10-02-00 291 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add << 292 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 293 energy
871 294
872 13-11-2015, MK, tag emdna-V10-01-55 295 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 296 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 297 file
875 298
876 10-11-2015, MK, tag emdna-V10-01-54 299 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 300 * remove unused variables
878 301
879 10-11-2015, MK, tag emdna-V10-01-53 302 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 303 * Coverity fixes
881 304
882 06-11-2015, MK, tag emdna-V10-01-52 305 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 306 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 307
885 06-11-2015, MK, tag emdna-V10-01-51 308 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 309 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 310 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 311
889 06-11-2015, MK, tag emdna-V10-01-50 312 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 313 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 314 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 315 * Add G4ITStepProcessorState_Lock.hh
893 316
894 06-11-2015, MK, tag emdna-V10-01-49 317 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 318 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 319 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 320 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 321 but in the source file - causing crashes on windows
899 322
900 04-11-2015, MK, tag emdna-V10-01-48 323 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 324 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 325 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 326 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 327 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 328 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 329 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 330 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 331 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 332 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using << 333 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 334 all dissociation products have been defined (they will just not be taken
912 into account) 335 into account)
913 * G4DNAMolecularReactionTable: delete reaction 336 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 337
915 03-11-2015, MK, tag emdna-V10-01-47 338 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 339 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac << 340 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 341 the call
919 342
920 03-11-2015, MK, tag emdna-V10-01-46 343 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 344 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 345 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 346 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 347 (causing navigator complains)
925 << 348
926 03-11-2015, MK, tag emdna-V10-01-45 349 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 350 * G4Serialize: Add definition in header for G4String
928 351
929 02-11-2015, MK, tag emdna-V10-01-44 352 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 353 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 354 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 355 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 356 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon << 357 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 358 -> G4MolecularConfMan is taking care of this
936 << 359
937 30-10-2015, MK, tag emdna-V10-01-43 360 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter << 361 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 362 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 363 * Unit tests corrected
941 * G4VITDiscreteProcess added 364 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 365 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 366 * Intermediate update for 10.2 release
944 << 367
945 27-10-2015, MK, tag emdna-V10-01-42 368 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 369 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 << 370
948 26-10-2015, MK, tag emdna-V10-01-41 371 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 372 * Sanche model: try to solve std::vector out of bounds
950 373
951 23-10-2015, MK, tag emdna-V10-01-40 374 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 375 * remove all CLHEP::shared_ptr usage
953 << 376
954 23-10-2015, CV, SM, tag emdna-V10-01-39 377 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel << 378 * Addded base class G4VDNAPTBModel
956 379
957 28-09-2015, SI, tag emdna-V10-01-38 380 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 381 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 382
960 19-09-2015, MK, tag emdna-V10-01-37 383 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 384 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 385 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 386
964 17-09-2015, MK, tag emdna-V10-01-36 387 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 388 * G4MoleculeGun: Remove compilation warnings
966 389
967 04-09-2015 MK, tag emdna-V10-01-35 390 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 391 * Fix G4MoleculeGun compilation errors
969 392
970 03-09-2015 SI, tag emdna-V10-01-34 393 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 394 * Added stationary regime to all inelastic models
972 395
973 19-08-2015, MK 396 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 397 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 398 - compatible with both Smoluchowski & Gillespie models
976 399
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 400 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 401 * Added easier handling of cumulative proba. in SR elastic models
979 402
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 403 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 404 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 405 declaration of G4MoleculeShoot.
983 406
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 407 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 408 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 409 declaration of G4MoleculeShootMessenger.
987 410
988 12-08-2015, MK, tag emdna-V10-01-29 411 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 412 * Add G4Serialize in the build tree temporarily
990 413
991 12-08-2015, MK, tag emdna-V10-01-28 414 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 415 * G4Serialize added
993 416
994 12-08-2015, MK 417 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 418 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 419
997 24-07-2015, MK 420 24-07-2015, MK
998 - G4MolecularReactionTable 421 - G4MolecularReactionTable
999 * Add get methods 422 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 423 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 424 * Molecule gun : place randomly in a box
1002 425
1003 15-07-2015, MK 426 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA << 427 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 428 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 429 * processes & models initialisation again
1007 430
1008 15-07-2015, MK, tag emdna-V10-01-26 431 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 432 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 433 * add macro to prevent warnings in non-verbose mode
1011 434
1012 11-07-2015, MK, tag emdna-V10-01-25 435 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 436 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 437 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 438
1016 10-07-2015, MK, tag emdna-V10-01-24 439 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 440 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 441 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 442 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 443 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 444
1022 08-07-2015, MK, tag emdna-V10-01-23 445 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 446 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 447 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 448 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose << 449 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 << 450 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 451 - G4MoleculeDefinition:
1029 ::SetFormatedName added 452 ::SetFormatedName added
1030 ::NewConfiguration methods added 453 ::NewConfiguration methods added
1031 ::NewConfiguration added 454 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 455 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 456 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 457 ::Finalize added
1035 - G4MolecularConfiguration: << 458 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 459 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 460 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 461 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec << 462 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula << 463 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 464 than molecule models
1042 - G4Molecule add constructor where only G4Mol 465 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 466 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 467 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 468 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 469 - G4DNAElectronHoleRecombination added
1047 470
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 471 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c << 472 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 473 fasterCode usage on shell selection.
1051 474
1052 26-06-2015, MK 475 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to << 476 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 477 warning message description
1055 478
1056 16-06-205, MK 479 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 480 - Add G4Scheduler::GetGun()
1058 481
1059 16-06-2015, MK, tag emdna-V10-01-21 482 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 483 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 484 - G4DNAIonElasticModel: clean and fix double free
1062 485
1063 12-06-2015, MK, tag emdna-V10-01-20 486 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 487 - remove virtual keyword from G4IT::GetPosition()
1065 488
1066 04-06-2015, MK 489 04-06-2015, MK
1067 - just cosmetics 490 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 491 - remove virtual keyword from G4IT::operator[]
1069 492
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 493 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 494 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 495 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 496 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 497 - Fully qualify std::string elsewhere as needed to adjust
1075 498
1076 22-05-2015, John Allison, tag emdna-V10-01-18 499 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 500 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 501 "G4Threading::IsMasterThread()".
1079 502
1080 17-05-2015, MK, tag emdna-V10-01-17 503 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 504 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 505 - Correct sources.cmake
1083 - Born headears: includes both model versions << 506 - Born headears: includes both model versions when proxy header is included
1084 507
1085 16-05-2015, MK, tag emdna-V10-01-16 508 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 509 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 510 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 511 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 512 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 513 - Add G4DNABornExcitationModel2 (temporary)
1091 514
1092 15-05-2015, MK, tag emdna-V10-01-15 515 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 516 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 517
1095 14-05-2015, MK, tag emdna-V10-01-14 518 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 519 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 520
1098 14-05-2015, MK, tag emdna-V10-01-13 521 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 522 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 523 - G4ITReaction: try to solve compilation error
1101 524
1102 12-05-2015, MK, tag emdna-V10-01-12 525 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 526 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 527
1105 12-05-2015, MK, tag emdna-V10-01-11 528 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 529 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 530
1108 11-05-2015, MK, tag emdna-V10-01-10 531 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 532 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 533 +Add GetPartialCrossSection
1111 +Code cleaning 534 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 535 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 536 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 537 - G4DNAChemistryManager::GetValue(...) added
1115 538
1116 02-05-2015, MK 539 02-05-2015, MK
1117 - Update G4TrackState & related classes 540 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: << 541 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian << 542 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 543 +comment useless method
1121 - G4Scheduler: << 544 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS << 545 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime << 546 +remove fTmpEndTime
1124 +Add CanICarryOn 547 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 548 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 549
1127 18-03-2015, MK, tag emdna-V10-01-08 550 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 551 - Same as before, just add the missing History file
1129 552
1130 18-03-2015, MK, tag emdna-V10-01-07 553 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 554 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 555 instead of a reference
1133 556
1134 12-02-2015, MK, tag emdna-V10-01-06 557 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 558 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 559 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi << 560 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 561
1139 11-02-2015, MK, tag emdna-V10-01-05 562 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 563 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 564 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 565 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 566
1144 16-01-2015, SI, tag emdna-V10-01-04 567 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 568 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 569
1147 14-12-2014, MK, tag emdna-V10-01-03 570 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 571 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval << 572 - ScreenRutherfordElastic: correct retrieval of water density
1150 573
1151 13-12-2014, SI, tag emdna-V10-01-02 574 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 575 - Added elastic model by H. Tran.
1153 576
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 577 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 578 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 579 to allow for compilation on Linux/clang-3.5.
1157 580
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 581 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 582 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 583 include missing files:
1161 G4ITTransportationManager.icc 584 G4ITTransportationManager.icc
1162 G4KDNode.icc 585 G4KDNode.icc
1163 G4KDTree.icc 586 G4KDTree.icc
1164 G4MoleculeFinder.hh 587 G4MoleculeFinder.hh
1165 588
1166 01-12-2014, MK, tag emdna-V10-00-63 589 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 590 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 591 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 592 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 593 when the particle has reached a boundary
1171 594
1172 28-11-2014, MK, tag emdna-V10-00-62 595 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 596 - Retag
1174 597
1175 28-11-2014, MK, tag emdna-V10-00-61 598 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 599 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 600 - Fix Brownian navigation
1178 - Some fixes related to scheduler 601 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 602 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 603 - Enhance comments
1181 604
1182 24-11-2014, MK, tag emdna-V10-00-60 605 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 606 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 607
1185 24-11-2014, MK, tag emdna-V10-00-59 608 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 609 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 610 - Remove useless verbose
1188 - Try to compile on all platforms 611 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 612 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 613 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 614 Just registering constructor is enough to initialized the chemistry
1192 615
1193 24-11-2014, MK, tag emdna-V10-00-58 616 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 617 - G4FastList: remove all friend declarations
1195 618
1196 22-11-2014, MK, tag emdna-V10-00-57 619 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 620 - Another attempt to compile G4FastList on all platforms
1198 621
1199 22-11-2014, MK, tag emdna-V10-00-56 622 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 623 - Attempt to compile G4FastList on all platforms
1201 624
1202 21-11-2014, MK, tag emdna-V10-00-55 625 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 626 - Attempt to compile G4FastList with clang
1204 627
1205 21-11-2014, MK, tag emdna-V10-00-54 628 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 629 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou << 630 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 631 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 632 - Update G4ITNavigator2 to the G4Navigator of John
1210 633
1211 21-11-2014, MK, tag emdna-V10-00-53 634 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b << 635 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 636 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 637 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time << 638 is false by default --> uses the random time computation for crossing
1216 boundaries 639 boundaries
1217 640
1218 20-11-2014, SI, tag emdna-V10-00-52 641 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 642 - Improved error message for missing data in PW elastic model
1220 643
1221 08-11-2014, MK, tag emdna-V10-00-51 644 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 645 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 646 when the asked item is not found
1224 647
1225 03-11-2014 MK, tag emdna-V10-00-50 648 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 649 - correct track creation by G4MoleculeGunMessenger
1227 650
1228 03-11-2014 MK, tag emdna-V10-00-49 651 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 652 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 653 - Correct a bug in G4MoleculeGun
1231 654
1232 28-10-2014 PA, tag emdna-V10-00-48 655 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 656 - correct compilation warnings
1234 657
1235 28-10-2014 PA, tag emdna-V10-00-47 658 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 659 - correct compilation warnings
1237 660
1238 28-10-2014 PA, tag emdna-V10-00-46 661 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 662 - correction in sources.cmake
1240 663
1241 28-10-2014 PA, tag emdna-V10-00-45 664 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 665 - retag to add LEPTS
1243 666
1244 28-10-2014 PA, tag emdna-V10-00-44 667 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 668 - add LEPTS
1246 669
1247 25-10-2014 MK, tag emdna-V10-00-43 670 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 671 - remove useless G4VITScheduler
1249 672
1250 25-10-2014 MK, tag emdna-V10-00-42 673 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 674 - correct warnings
1252 675
1253 24-10-2014 MK, tag emdna-V10-00-41 676 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 677 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 678 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 679 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 680 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 681 - G4ITFinder added
1259 - G4VITTrackHolder added 682 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 683 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 684 - code cleaned + useless classes removed
1262 685
1263 24-10-2014 MK, tag emdna-V10-00-40 686 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 687 - G4ITStepManager: remove verbose at closure time
1265 688
1266 21-10-2014 MK, tag emdna-V10-00-39 689 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 690 - try to solve crash at closure time
1268 691
1269 21-10-2014 MK, tag emdna-V10-00-38 692 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 693 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 694 table when deleted
1272 - update disclaimer 695 - update disclaimer
1273 696
1274 17-10-2014 MK, tag emdna-V10-00-37 697 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 698 - clean code
1276 - G4ITStepManager: one can ask why simulation 699 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 700 - remove useless verbose
1278 701
1279 17-10-2014 MK, tag emdna-V10-00-36 702 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 703 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 704 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 705 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 706
1284 10-10-2014 MK, tag emdna-V10-00-35 707 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 708 Avoid use of std::map at the application level in TimeStepAction
1286 709
1287 07-10-2014 MK, tag emdna-V10-00-34 710 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 711 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 712 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 713 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 714
1292 07-10-2014 MK, tag emdna-V10-00-33 715 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 716 Initialize G4ITStepManager in G4DNAChemistryManager
1294 717
1295 17-09-2014 MK, tag emdna-V10-00-32 718 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 719 Add G4ITStepManager + messenger
1297 Tag before architecture change 720 Tag before architecture change
1298 721
1299 12-07-2014 SI, tag emdna-V10-00-31 722 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 723 Removed obsolete class for electron excitation
1301 724
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 725 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 726 - Get rid of obsolete 'register' keyword in code.
1304 727
1305 05-06-2014 SI, tag emdna-V10-00-29 728 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 729 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D << 730 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 731 G4GenericIon usage
1309 - requires G4EMLOW6.39 732 - requires G4EMLOW6.39
1310 733
1311 04-06-2014 MK, tag emdna-V10-00-28 734 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 735 Remove directory management/include/impl
1313 Prepare for release 736 Prepare for release
1314 737
1315 04-06-2014 MK, tag emdna-V10-00-27 738 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 739 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 740 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 741 Avoid usage of molecule iterators as pointers
1319 742
1320 03-06-2014 SI, tag emdna-V10-00-26 743 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 744 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 745
1323 28-05-2014 VI, SI tag emdna-V10-00-25 746 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 747 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 748 Ionisation models switch to use angular generator
1326 interface 749 interface
1327 750
1328 12.05.2014 MK, tag emdna-V10-00-24 751 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 752 Try to remove warnings 4
1330 753
1331 12.05.2014 MK, tag emdna-V10-00-23 754 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 755 Try to remove warnings 3
1333 756
1334 12.05.2014 MK, tag emdna-V10-00-22 757 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 758 Try to remove warnings 2
1336 759
1337 12.05.2014 MK, tag emdna-V10-00-21 760 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 761 Try to remove warnings
1339 762
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 763 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx << 764 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 765 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 766 G4EMLOW6.38 needed
1344 767
1345 07-04-2014 SI tag emdna-V10-00-19 768 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 769 Changed faster method interpolation in
1347 G4DNABornIonisationModel << 770 G4DNABornIonisationModel
1348 771
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 772 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 773 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 774 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 775 Corrected order of inclusion of some headers and use of <>/"".
1353 776
1354 04-04-2014 MK tag emdna-V10-00-17 777 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 778 Try to solve warnings when G4VERBOSE is off
1356 779
1357 02-04-2014 MK tag emdna-V10 780 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 781 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 782
1360 02-04-2014 MK tag emdna-V10 783 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 784 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 785
1363 02-04-2014 MK tag emdna-V10 786 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 787 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 788 -> this part is withdrawn for now
1366 789
1367 02-04-2014 MK tag emdna-V10 790 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 791 - version 2 : try fixing the build error on mac
1369 792
1370 02-04-2014 MK tag emdna-V10 793 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 794 - version 1 : try to fix build errors and warnings on mac
1372 795
1373 02-04-2014 MK tag emdna-V10 796 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 797 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 798 (G4MemStat & G4MolecularConfiguration)
1376 799
1377 02-04-2014 MK tag emdna-V10 800 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 801 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 802 (problem coming from having as a friend class a template argument)
1380 803
1381 02-04-2014 MK tag emdna-V10 804 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla << 805 - try to fix build error on windows platform
1383 806
1384 01-04-2014 MK tag emdna-V10 807 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 808 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 809 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 810
1388 01-04-2014 MK tag emdna-V10 811 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 812 - reset CMakeLists.txt
1390 813
1391 01-04-2014 MK tag emdna-V10 814 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 815 - update chemistry
1393 816
1394 01-04-2014 SI tag emdna-V10-00-05 817 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 818 - Modified calculation of secondary kinetic for fast code
1396 819
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 820 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 821 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 822 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 823 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 824
1402 25-03-2014 VS, SI tag emdna-V10-00-03 825 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 826 - Added several clear() to vectors for MT
1404 827
1405 17-03-2014 SI tag emdna-V10-00-02 828 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc << 829 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 830 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 831 to be used with G4EMLOW6.36
1409 832
1410 12-12-2013 M.K tag emdna-V10-00-01 833 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 834 - G4DNAMolecularMaterial: Remove unused variable
1412 835
1413 12-12-2013 M.K tag emdna-V10-00-00 836 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to << 837 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 838 a model is not created at initialisation time
1416 839
1417 21-11-2013 V.I. tag emdna-V09-06-22 840 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 841 - G4ITStepProcessor2 - removed obsolete unused header
1419 842
1420 01-11-2013 M.K tag emdna-V09-06-21 843 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 844 - Correct incorrect singleton check introduced in previous tag
1422 845
1423 01-11-2013 M.K tag emdna-V09-06-20 846 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 847 - Prepare for release bis
1425 848
1426 01-11-2013 M.K tag emdna-V09-06-19 849 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 850 - Prepare for release
1428 851
1429 10-10-2013 M.K. tag emdna-V09-06-18 852 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 853 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 854
1432 06-10-2013 M.K. tag emdna-V09-06-17 855 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 856 - Same as before once again
1434 857
1435 03-10-2013 M.K. tag emdna-V09-06-16 858 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 859 - Same as before
1437 860
1438 03-10-2013 M.K. tag emdna-V09-06-15 861 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 862 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t << 863 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 864 by the user - stage 1
1442 865
1443 14-09-2013 M.Asai tag emdna-V09-06-14 866 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 867 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 868 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 869 with virtual keyword in G4VITProcess.
1447 870
1448 12-09-2013 M.K. tag emdna-V09-06-13 871 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 872 Correction of an inadvertent modification introduced in previous tag
1450 873
1451 12-09-2013 M.K. tag emdna-V09-06-12 874 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 875 Correct bound checks in G4ITManager.icc
1453 876
1454 16-08-2013 S.I. tag emdna-V09-06-11 877 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 878 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 879
1457 16-08-2013 S.I. tag emdna-V09-06-10 880 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 881 Added G4DNAIons
1459 882
1460 25-06-2013 M.K. tag emdna-V09-06-09 883 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 884 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet << 885 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 886 auto_ptr according to c++ std version
1464 887
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 888 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 889 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 890 for problem accidentally introduced in previous tag.
1468 891
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 892 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 893 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 894 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 895 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 896 compilation on Windows.
1474 897
1475 06-06-2013 S.I. tag emdna-V09-06- 898 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 899 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 900 Requires G4EMLOW version 6.33
1478 901
1479 25-05-2013 M.K. tag emdna-V09-06- 902 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 903 *Fix warning compilation in G4KDMap for specific gcc version
1481 904
1482 24-05-2013 M.K. tag emdna-V09-06- 905 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi << 906 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 907 but still not in usage
1485 908
1486 23-05-2013 M.K. tag emdna-V09-06- 909 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 910 * G4KDMap : try fix error on std:ceil call on windows
1488 911
1489 23-V09-06-03-05-2013 M.K. tag emd 912 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 913 * G4KDMap : used deque::iterator
1491 914
1492 915
1493 22-05-2013 M.K. tag emdna-V09-06- 916 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 917 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 918 * G4KDMap : pop out elements from map
1496 919
1497 22-05-2013 M.K. tag emdna-V09-06-00 920 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global << 921 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager << 922 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 923 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 924 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 925 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 926 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali << 927 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes << 928 intialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI << 929 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 930
1508 12-11-2012 M.K tag emdna-V09-05- 931 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 932 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 933 coverity warnings (rev 64993)
1511 934
1512 06-11-2012 G.Cosmo tag emdna-V09 935 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 936 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 937 for objects in maps...
1515 938
1516 04-11-2012 M.K. tag emdna-V09-05-33 939 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 940 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 941 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 942 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 943 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 944 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 945 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 946 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 947 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 948 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 949 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 950 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 951 add "else" before "if" statements and
1529 add variables to avoid ma 952 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 953 dna.files : update files (rev 64725)
1531 954
1532 03-11-2012 S.I. tag emdna-V09-05-32 955 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 956 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 957 classes
1535 958
1536 24-10-2012 M.K tag emdna-V09 959 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 960 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 961 (previously commented)
1539 962
1540 23-10-2012 M.K tag emdna-V09 963 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 964 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 965 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 966
1544 18-10-2012 M.K tag emdna-V09 967 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 968 Previous tag did not include history changes
1546 969
1547 18-10-2012 M.K tag emdna-V09 970 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 971 Remove warning
1549 972
1550 17-10-2012 M.K tag emdna-V09 973 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 974 Correct a typo from previous tag
1552 975
1553 17-10-2012 M.K tag emdna-V09 976 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 977 Correct information in headers
1555 Rename G4DNADiffustionControlledM 978 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 979 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 980
1558 01-10-2012 SI, P.Pater tag emdna-V09 981 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 982 Force kinetic energy to zero for real killings in models.
1560 983
1561 12-07-2012 G.Cosmo tag emdna-V09 984 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 985 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 986 constants, in plan to remove implicit inclusion from globals.hh.
1564 987
1565 11.07.2012 M.K tag emdna-V09 988 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 989 Correct warnings introduce in previous tag
1567 990
1568 11.07.2012 M.K tag emdna-V09 991 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 992 Tag to be proposed
1570 993
1571 25.06.2012 M.K tag emdna-V09-05-21 994 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 995 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 996 Modify molecule's name
1574 << 997
1575 21.06.2012 S.I tag emdna-V09-05-20 998 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte << 999 Update of electron elastic scattering low limit
1577 1000
1578 09.06.2012 M.K tag emdna-V09-05-19 1001 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 1002 Fixed shadowing
1580 1003
1581 04.06.2012 M.K tag emdna-V09-05-18 1004 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 1005 Add G4ITTrackingInteractivity + correct coverity warnings
1583 1006
1584 24.05.2012 M.K tag emdna-V09-05-17 1007 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 1008 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 1009
1587 23.05.2012 M.K tag emdna-V09-05-16 1010 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 1011 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 1012 G4ITStepManager
1590 Prevent call of destructor of G4I 1013 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 1014 G4DNAChemistryManager
1592 1015
1593 23.05.2012 M.K tag emdna-V09-05-15 1016 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 1017 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 1018 when one of its methods is called using a material that is
1596 not defined as a molecule 1019 not defined as a molecule
1597 1020
1598 21.05.2012 M.K tag emdna-V09-05-14 1021 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 1022 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 1023 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 1024 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 1025 Modify all models to use G4DNAMolecularMaterial
1603 1026
1604 14.05.2012 M.K tag emdna-V09-05-13 1027 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 1028 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 1029 Add G4DNADamages
1607 1030
1608 10.05.2012 M.K tag emdna-V09-05-12 1031 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 1032 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 1033 from UserReactionAction::EndProcessing()
1611 1034
1612 08.05.2012 M.K tag emdna-V09-05-11 1035 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 1036 Use inverseErf from CLHEP
1614 1037
1615 03.05.2012 M.K tag emdna-V09-05-10 1038 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 1039 Add erfc function for windows compilator (VC++)
1617 1040
1618 03.05.2012 M.K tag emdna-V09-05-09 1041 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 1042 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 1043
1621 03.05.2012 M.K tag emdna-V09-05-08 1044 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 1045 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 1046 Add new methods in G4ChemistryManager :
1624 - PushMolecule 1047 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 1048 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 1049 Reset() at the end of G4ITStepManager::Process()
1627 1050
1628 30.03.2012 M.K tag emdna-V09-05-07 1051 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 1052 Same as emdna-V09-05-06
1630 1053
1631 30.03.2012 M.K tag emdna-V09-05-06 1054 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 1055 1) Add separate navigator for synchronous tracking
1633 New classes : 1056 New classes :
1634 * G4ITTransportationManager 1057 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 1058 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 1059 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 1060 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 1061 3) Solve bugs with normal and brownian ITTransportation
1639 1062
1640 14.03.2012 M.K tag emdna-V09-05-05 1063 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 1064 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 1065 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 1066 -> become size_t + related changes
1644 * when a poststep process propo 1067 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 1068 => considered as a time, and transportation::computestep
1646 is used 1069 is used
1647 1070
1648 14.03.2012 M.K tag emdna-V09-05-04 1071 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 1072 Fix compilation warning
1650 1073
1651 14.03.2012 M.K tag emdna-V09-05-03 1074 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 1075 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 1076 Fix coverity warnings
1654 1077
1655 18.01.2012 S.I. tag emdna-V09 1078 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 1079 Removal of G4Water* classes in utils
1657 1080
1658 11.01.2012 M.K tag emdna-V09 1081 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 1082 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 1083 concerning the final position of the solvated electron
1661 using Sanche thermalization 1084 using Sanche thermalization
1662 1085
1663 16.12.2011 S.I tag emdna-V09 1086 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 1087 Updated source of cross section file for elastic scattering
1665 1088
1666 25.11.2011 M.K tag emdna-V09 1089 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 1090 Correct a typo in previous tag
1668 1091
1669 25.11.2011 M.K tag emdna-V09 1092 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 1093 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 1094 rather than center of mass in DNAMolecularReaction
1672 1095
1673 21.11.2011 M.K tag emdna-V09 1096 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 1097 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 1098 avoid conflicts with ROOT.
1676 Add short class description (comm 1099 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 1100 in JavaDoc style for doxygen use.
1678 1101
1679 21.11.2011 M.K tag emdna-V09 1102 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1103 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1104 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1105 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1106 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1107 when the time steps returned by the time stepper
1685 and the processes are equal 1108 and the processes are equal
1686 Improve verbose 1109 Improve verbose
1687 1110
1688 21.11.2011 M.K tag emdna-V09 1111 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1112 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1113 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1114 Correct verbose in new models & process
1692 1115
1693 18.11.2011 M.K tag emdna-V09 1116 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl << 1117 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1118 in G4DNAChemistryManager
1696 1119
1697 18.11.2011 M.K tag emdna-V09 1120 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1121 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1122 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1123 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1124
1702 15.11.2011 G.Cosmo tag emdna-V09 1125 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1126 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1127 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1128 Windows.
1706 Fixed compilation warning on icc 1129 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1130 G4MolecularDecayTable.cc
1708 1131
1709 10.11.2011 M.K. tag emdna-V09 1132 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1133 Fix a bug in G4DNATransformElectronModel
1711 1134
1712 10.11.2011 M.K. tag emdna-V09 1135 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1136 Clean classes for release
1714 Add comment into source 1137 Add comment into source
1715 Change name of some methods 1138 Change name of some methods
1716 Transform two independent singlet 1139 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1140 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1141 (ITStepMan + DNAChemMan)
1719 1142
1720 10.11.2011 M.K. tag emdna-V09 1143 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1144 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1145 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1146 the chemistryManager.
1724 1147
1725 09.11.2011 M.K. tag emdna-V09 1148 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1149 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1150 in G4TrackListNode.
1728 Simplify and improve the use of d 1151 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1152 Add more convenient methods in userReactionAction
1730 1153
1731 08.11.2011 M.K. tag emdna-V09 1154 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1155 Fix coverity warnings
1733 1156
1734 07.11.2011 M.K. tag emdna-V09 1157 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1158 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1159 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1160 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1161 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1162 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1163 Clean classes for release
1741 1164
1742 03.11.2011 M.K. tag emdna-V09 1165 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1166 Add dna libs in sources.cmake
1744 1167
1745 03.11.2011 M.K. tag emdna-V09 1168 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1169 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1170 Add dna includes in sources.cmake
1748 << 1171
1749 01.11.2011 M.K. tag emdna-V09 1172 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1173 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1174 G4ITTransportation, G4TrackList on Windows
1752 1175
1753 01.11.2011 G.Cosmo 1176 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1177 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1178 updated GNUMakefiles to have it properly defined.
1756 1179
1757 31.10.2011 M.K tag emdna-V09-04-35 1180 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1181 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1182 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives << 1183 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1184 Fix windows compilation errors & warnings
1762 1185
1763 28.10.2011 M.K tag emdna-V09-04-34 1186 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1187 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1188 Plus remove obsolete G4Exception
1766 1189
1767 28.10.2011 M.K tag emdna-V09-04-33 1190 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1191 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1192 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1193 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1194 to models
1772 1195
1773 27.10.2011 M.K tag emdna-V09-04-32 1196 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1197 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1198 coverity errors.
1776 1199
1777 26.10.2011 M.K tag emdna-V09-04-31 1200 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared << 1201 change std::shared_ptr to CLHEP::shared_ptr
1779 1202
1780 26.10.2011 M.K. tag emdna-V09-04-30 1203 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1204 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1205 G4MolecularConfiguration::fManager added
1783 1206
1784 26.10.2011 M.K. tag emdna-V09-04-29 1207 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1208 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1209 Add electron solvatation process & models
1787 Add chemical processes 1210 Add chemical processes
1788 1211
1789 21.10.2011 M.K. tag emdna-V09-04-28 1212 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model << 1213 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1214 emdna-V09-04-24
1792 << 1215
1793 21.10.2011 M.K. tag emdna-V09-04-27 1216 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1217 CMake fixes from emdna-V09-04-24
1795 << 1218
1796 21.10.2011 M.K. tag emdna-V09-04-26 1219 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous << 1220 Bug fixes and new dev from the previous tag
1798 1221
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1222 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1223 Extension of ionisation by HZE proposed by Z. Francis
1801 1224
1802 20.10.2011 M.K. tag emdna-V09-04-24 1225 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1226 Bug fixes and new dev from the previous tag
1804 << 1227
1805 07.10.2011 M.K. tag emdna-V09-04-23 1228 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files << 1229 First tag with "molecules" files
1807 << 1230
1808 07.10.2011 M.K. tag emdna-V09-04-22 1231 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1232 Add molecules+management directory
1810 First tag with "management" files 1233 First tag with "management" files
1811 1234
1812 09.09.2011 G.Folger tag emdna-V09 1235 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer << 1236 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc << 1237 G4DNAMoleculeManager.cc
1815 1238
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1239 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1240 Updated sources.make and CMakeLists.txt
1818 1241
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1242 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1243 Reorganized whole architecture.
1821 1244
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1245 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1246 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1247 if no deexcitation)
1825 1248
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1249 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1250 Changed code (em0006) numbering for G4Exception
1828 1251
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1252 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1253 Switched to new G4Exception syntax
1831 1254
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1255 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1256 Added enhanced debug information in ionisation models
1834 1257
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1258 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1259 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1260
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1261 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1262 Removed obsolete information.
1840 1263
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1264 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1265 Updated deexcitation initialization in ionization models.
1843 1266
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1267 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1268 Coverity warnings removal
1846 1269
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1270 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1271 - Increased energy limits for
1849 G4DNAChargeIncrease 1272 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1273 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1274 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1275 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1276 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade << 1277 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1278 of ionisation classes for Auger e-
1856 1279
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1280 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1281 Further compilation warnings removal
1859 1282
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1283 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1284 Compilation warnings removal
1862 1285
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1286 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1287 added Atomic Deexcitation to Ionisation Models
1865 1288
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1289 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1290 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1291 G4DNADingfelderChargeIncreaseModel.cc.
1869 1292
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1293 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1294 Changed process sub-type numbering.
1872 1295
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1296 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1297 Fixed coverity warnings.
1875 1298
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1299 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1300 Updated all models for handling of variable density.
1878 1301
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1302 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1303 Addition of dependencies to configuration files.
1881 1304
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1305 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1306 Addition of all files.
1884 1307
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1308 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1309 Creation of dna sub-package in electromagnetic category.