| Geant4 Cross Reference |
1 # Category emdna History << 1 =========================================================
>> 2 Geant4 - an Object-Oriented Toolkit for Simulation in HEP
>> 3 =========================================================
>> 4
>> 5 Category History file
>> 6 ---------------------
>> 7 This file should be used by G4 developers and category coordinators
>> 8 to briefly summarize all major modifications introduced in the code
>> 9 and keep track of all category-tags.
>> 10 It DOES NOT substitute the CVS log-message one should put at every
>> 11 committal in the CVS repository !
>> 12
>> 13 ----------------------------------------------------------
>> 14 * Reverse chronological order (last date on top), please *
>> 15 ----------------------------------------------------------*
2 16
3 See `CONTRIBUTING.rst` for details of **requir << 17 11-05-2017, VI tag emdna-V10-02-40
4 which **must** added in reverse chronological << 18 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
5 It must **not** be used as a substitute for wr <<
6 <<
7 ---------------------------------------------- <<
8 <<
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) <<
10 - missing value in DNA PTB Ionization Structur <<
11 - missing GetMaterial() in DNA PTB Excitation <<
12 <<
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) <<
14 - Modified the molecule names of OH, HO2, O in <<
15 Each molecule configuration has a molecule d <<
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with <<
35 of std::function in G4OctreeFinder. <<
36 <<
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) <<
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with <<
51 Added missing declarations for TG4MoleculeSh <<
52 Based on [GitHub PR#69](https://github.com/G <<
53 <<
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) <<
106 - Use G4FindDataDir to access data libraries i <<
107 <<
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) <<
109 - correct fastercode section for dna opt6 <<
110 <<
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) <<
112 - correct scavenger counter for oxygen <<
113 <<
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) <<
115 - Fixed the K shell bug in G4DNARuddIonisation <<
116 <<
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) <<
118 - improved equilibrium processes, introduced G <<
119 <<
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) <<
121 - In navigation classes, removed references to <<
122 which is now deprecated. <<
123 <<
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) <<
125 - Removed references to unused G4GRSSolid and <<
126 <<
127 ## 2023-08-29 (emdna-V11-01-18) <<
128 - Fix minor/obvious Coverity issues <<
129 <<
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) <<
131 - Apply core clang-tidy fixes plus those for <<
132 - Cons/destructor modernization <<
133 - Readability and logic for conditionals/boo <<
134 <<
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) <<
136 - Apply patch from [GitHub PR 58](https://gith <<
137 - Use std::erfc to avoid precision loss <<
138 - Remove unused header <<
139 <<
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) <<
141 - minor correction for DNA material in option6 <<
142 <<
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) <<
144 - use analytical method for DNA material in op <<
145 <<
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 <<
147 - G4DNARuddIonisationExtendedModel - model re- <<
148 threads, applicable for scaled energy interv <<
149 an ion data is not available proton x-sectio <<
150 used, sampling of delta-electron is done usi <<
151 <<
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) <<
153 - Modified DNA cross section file name to new <<
154 <<
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) <<
156 - Add DNA cross section to dna_option6 <<
157 <<
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) <<
159 - Fix Compilation warnings on XCode <<
160 <<
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) <<
162 - correct the initial values of G4DNAEventSche <<
163 <<
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) <<
165 - add time structure (pulsed beam) to water ra <<
166 <<
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) <<
168 - correct KDTree bug <<
169 <<
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) <<
171 - icsd physicslist: deleted unused model, <<
172 - Apdated RegisterModel function with new stru <<
173 - added model data to G4DNAMaterialManager sin <<
174 <<
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) <<
176 - Fixed compilation warning on macOS/XCode for <<
177 in G4DNAVacuumModel::Initialise(). <<
178 <<
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) <<
180 - Introduced G4DNAMaterialManager to manage av <<
181 and keeps DNA cross section data in one thread <<
182 - minor change in G4VDNAModel <<
183 <<
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) <<
185 - reorganize multiple material model of PTB mo <<
186 G4VDNAModel plays like a data layer for multip <<
187 The concrete models are independent of G4DNAMo <<
188 <<
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) <<
190 - replaced string to material index and clean <<
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, <<
192 G4DNAPTBExcitationStructure) - PTB models <<
193 - added material pointer members for each conc <<
194 - removed unused objects (G4DataVector()) <<
195 <<
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) <<
197 - clean G4DNAModelInterface file for the model <<
198 <<
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) <<
200 - fix coverity of G4DNARuddIonisationExtendedM <<
201 (Uninitialized scalar variable) from cand1 ana <<
202 <<
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 <<
204 - G4DNARuddIonisationExtendedModel - fixed com <<
205 radioactive decay module - before this upd <<
206 only 5 ions have data needed for this mode <<
207 model scaling relation to the carbon ion i <<
208 no data; low-energy limit is used now more <<
209 but not killed, because they may have radi <<
210 lines are removed from the class <<
211 <<
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) <<
213 - Fixed more compilation warnings for implicit <<
214 <<
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) <<
216 - delete unused tests in dna (G4DNAProcessTest <<
217 <<
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) <<
219 - Fixed compilation warnings for implicit type <<
220 <<
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 <<
222 - G4DNAUeharaScreenedRutherfordElasticModel - <<
223 low and high energy limit for the model; r <<
224 <<
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) <<
226 - Fix Coverity issues for ref-09 <<
227 <<
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) <<
229 - minor correction of IRT-syn model (chemistry <<
230 after 1 ps. <<
231 <<
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- <<
233 - Add nitrogen models from PTra code <<
234 <<
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) <<
236 - Fixed minor mistake of file name in G4DNARPW <<
237 - Added protection for HighEnergyLimit/LowEner <<
238 G4DNARPWBAExcitationModel <<
239 <<
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) <<
241 - Fixed compilation warnings on Intel/icx comp <<
242 but not used in G4ITNavigator2. <<
243 <<
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) <<
245 - Fix user's report for IRT model. <<
246 If the first IRTSampling won't give any rea <<
247 <<
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) <<
249 - Fix Coverity static analysis for ref-08 <<
250 uninit_member in G4DNAMillerGreenExcitationMo <<
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI <<
252 Use auto & instead of auto : G4ITFinder, G4DN <<
253 <<
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) <<
255 - Resolve dependency inconsistencies : <<
256 dna/management/include/G4ChemicalMoleculeF <<
257 dna/management/include/G4UserMeshAction.hh <<
258 dna/management/include/G4OctreeFinder.hh i <<
259 <<
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) <<
261 - Partially resolve dependency inconsistencies <<
262 - NB: cannot be resolved fully without intro <<
263 G4emdna-man, G4emdna-molman, G4emdna-utils <<
264 <<
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) <<
266 - Define G4CT_MAX_COUNT for changing "compile <<
267 errors on NVHPC compiler. <<
268 <<
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 <<
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo <<
271 cleanup according to the recent G4VEmProce <<
272 headers are moved to source; C++11 keyward <<
273 <<
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) <<
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela <<
276 G4DNACPA100IonisationModel.cc, G4DNAChampion <<
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo <<
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx <<
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis <<
280 G4DNASancheExcitationModel.cc : <<
281 use G4FindDataDir("G4LEDATA") to find datase <<
282 <<
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) <<
284 - correct DNA ion definitions in G4DNARuddIoni <<
285 <<
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) <<
287 - G4Octree : fixed Coverity warning. <<
288 <<
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) <<
290 - update data structure to improve performance <<
291 <<
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) <<
293 - G4ITTransportation: fixed misuse of bitwise <<
294 <<
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) <<
296 - Added missing headers. <<
297 <<
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) <<
299 - change the scavenging filter of the IRT beyo <<
300 <<
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) <<
302 - Add localthread for fUse of G4VMoleculeCount <<
303 <<
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa <<
305 - Incorporation of model based on RPWBA to tra <<
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI <<
307 <<
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) <<
309 - add UserBrownianAction in G4DNABrownianTrans <<
310 G4DNAMolecularDissociation <<
311 - replace G4int by int64_t for width integer t <<
312 - add fResetScavenger in G4SchedulerMessenger <<
313 <<
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) <<
315 - save local instances for recurrent access to <<
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo <<
317 G4DNARuddIonisationModel <<
318 - use G4Pow and G4Log instead of std::pow and <<
319 - inside G4DNARuddIonisationExtendedModel comm <<
320 inside G4DNAGenericIonsManager <<
321 <<
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) <<
323 - Debug the report #2235 which might be relate <<
324 - Clean code <<
325 - Delete G4ITFinder.cc <<
326 <<
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) <<
328 - save local instances for recurrent access to <<
329 G4DNADingfelderChargeDecreaseModel and G4DNADi <<
330 - use G4Pow and G4Log instead of std::pow and <<
331 <<
332 ## 2022-03-18 SI (emdna-V11-00-10) <<
333 - add protection in G4DNACPA100IonisationModel <<
334 <<
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) <<
336 - remove macro commands to control the chemist <<
337 (creating models in G4SchedulerMessenger can m <<
338 - add flag OctreeFinder in IRT_syn's Initializ <<
339 <<
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) <<
341 - add macro commands to control the chemistry <<
342 parameters including the chemical molecules an <<
343 <<
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) <<
345 - optimize IRT-syn model, use reaction radius <<
346 - delete G4VReactionType, G4DNAReactionTypeMan <<
347 G4DNAPartiallyDiffusionControlled <<
348 - delete G4DNAIRT_geomtries <<
349 <<
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) <<
351 - `G4ITTransportation`: Make `PrepareState` mo <<
352 - `G4DNAPolyNucleotideReactionProcess`: <<
353 - Move `PrepareState` and `State` macros int <<
354 - Make `PrepareState` more function-like, ex <<
355 - Move variable `pMoleculeA` under `G4VERBOS <<
356 <<
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) <<
358 - add the condition of water material for the <<
359 warning in G4DNAMolecularDissociation::DecayIt <<
360 <<
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) <<
362 - modify the macro in G4Molecule.cc and G4ITTy <<
363 <<
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) <<
365 - Prefer pointer to `const G4Material` if poss <<
366 <<
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) <<
368 - Remove useless `const_cast` of `G4VSensitive <<
369 <<
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) <<
371 - add G4DNAPolyNucleotideReactionProcess, G4VD <<
372 files for DNA damage applications <<
373 <<
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) <<
375 - Change to new Markdown History format <<
376 <<
377 --- <<
378 <<
379 # History entries prior to 11.0 <<
380 <<
381 8-11-2021, H. Tran, emdna-V10-07-15 <<
382 - corrected Circular dependencies for mesoscop <<
383 - corrected the problem in IRT <<
384 <<
385 4-11-2021, H. Tran, emdna-V10-07-14 <<
386 - define a G4FakeParticleID::fLastValue in the <<
387 delete G4FakeParticleID.cc, <<
388 solve arithmetic problems, <<
389 Added new mesoscopic model for dna chemistry <<
390 <<
391 21-10-2021, W.G.Shin, emdna-V10-07-13 <<
392 - Added a virtual classes for DNA geometry - G <<
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul <<
394 G4ITModelProcessor, G4Sch <<
395 G4DNAMolecularReactionTab <<
396 <<
397 23-09-2021, A. Ribon, emdna-V10-07-12 <<
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit <<
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh <<
400 G4DNAChargeIncrease, G4DNAElectronSolvation, <<
401 G4DNASecondOrderReaction, G4DNAElectronHoleR <<
402 G4DNABrownianTransportation : replaced hardw <<
403 with enum values introduced in the new class <<
404 <<
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 <<
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati <<
407 G4VLEPSModel - updated interfaces to G4Physi <<
408 <<
409 16-07-2021, D. Sakata, emdna-V10-07-10 <<
410 - Fixed initialization error in G4DNAELSEPAEla <<
411 <<
412 28-06-2021, G. Cosmo, emdna-V10-07-09 <<
413 - Fixed compilation error in G4ITMultiNavigato <<
414 enabled. <<
415 <<
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 <<
417 - Added new classes G4DNADiracRMatrixExcitatio <<
418 G4DNAQuinnPlasmonExcitatio <<
419 G4DNARelativisticIonisatio <<
420 G4DNAPlasmonExcitation <<
421 - Modified G4DNAELSEPAElasticModel for gold <<
422 <<
423 9-05-2021, H.Tran, tag emdna-V10-07-07 <<
424 - Add IRT-syn model <<
425 <<
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 <<
427 - Migrate build to modular CMake API <<
428 <<
429 27-04-2021, H.Tran, tag emdna-V10-07-05 <<
430 - G4DNAElectronHoleRecombination: added Octree <<
431 - G4DNABrownianTransportation: modified AlongS <<
432 - added OctreeFinder and IRTUtils <<
433 <<
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 <<
435 - G4DNABornAngle, G4DNARuddAngle - updated pri <<
436 <<
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 <<
438 - Move DNA-related Unit Tests from lowenergy/t <<
439 <<
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 <<
441 - Fixed dependency on g4tools, now moved to ex <<
442 <<
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 <<
444 - G4DNAElectronHoleRecombination <<
445 Dissociation channel of electron-hole recomb <<
446 G4EmDNAChemistry, _option1, _option2, _optio <<
447 - G4DNAWaterDissociationDisplacer <<
448 Added the fragment displacement for new diss <<
449 <<
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 <<
451 - Fix thread contention on mutable data in G4D <<
452 help resolving observed crashes in MT runs. <<
453 Some code cleanup. <<
454 <<
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 <<
456 - G4DNAMolecularMaterial - removed commented l <<
457 - History file fixed <<
458 <<
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 <<
460 - G4DNAMolecularMaterial - attempt to fix nigh <<
461 in chem6 example - do not delete instance of <<
462 <<
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 <<
464 - Added dependency on analysis/g4tools in GNUm <<
465 required after analysis update (analysis-V10 <<
466 <<
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 <<
468 - Fixed coverity warning <<
469 <<
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 <<
471 - Fixed coverity warnings <<
472 - Fix of IRT bug <<
473 (protection for the crash induced by empty re <<
474 <<
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 <<
476 - Add missing G4analysismng module dependency <<
477 <<
478 20-05-20: W.G.Shin emdna-V10-06-05 <<
479 - Revised displacement of OH radicals of B1A1 <<
480 based on momentum conservation in G4DNAWaterDi <<
481 - Added missing History <<
482 <<
483 26-04-20: W.G.Shin emdna-V10-06-04 <<
484 - Fixed coverity test <<
485 <<
486 15-04-20: G.Cosmo emdna-V10-06-03 <<
487 - G4MoleculeDefinition: copy constructor and a <<
488 are not allowed (as for G4ParticleDefinition <<
489 <<
490 19-02-20: W.G.Shin emdna-V10-06-02 <<
491 - Fixed memory issue on G4DNAMolecularReaction <<
492 - Revised headeres of IRT classes <<
493 <<
494 12-02-20: W.G.Shin emdna-V10-06-01 <<
495 - Added protections floating point exception i <<
496 <<
497 10-01-20: W.G.Shin emdna-V10-06-00 <<
498 - Added classes for IRT <<
499 - Added features in management classes for IRT <<
500 G4ITModelProcessor ...) <<
501 - Added features in G4DNAMolecularReactionTabl <<
502 - Added molecules of Plante et al. (2017) (Oxy <<
503 <<
504 15-11-19: G.Cosmo emdna-V10-05-11 <<
505 - Fixed cases of implicit type conversions fro <<
506 <<
507 8-11-19: HT, tag emdna-V10-05-10 <<
508 - Fixed the exception divide by zero of diffus <<
509 G4DNABrownianTransportation::AlongStepGetPhysi <<
510 for the case of static molecules (DNA) (diffus <<
511 <<
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 <<
513 - Enabled G4ItNavigator{1,2} to flag if it enc <<
514 of external physical volume (meant for adapt <<
515 <<
516 19-10-19: WGS, SI, tag emdna-V10-05-08 <<
517 - Added new model G4DNAELSEPAElasticModel <<
518 <<
519 11-10-19: WGS, SI, tag emdna-V10-05-07 <<
520 - G4DNAOneStepThermalizationModel.* : <<
521 added Kreipl and Meesungnoen amorphous ice mod <<
522 - G4DNAWaterDissociationDisplacer* : updated <<
523 <<
524 03-06-2019, MK, tag emdna-V10-05-06 <<
525 - Fix GCC9 warnings <<
526 <<
527 26-03-2019, HT, tag emdna-V10-05-05 <<
528 - Added G4DNAMolecule <<
529 <<
530 10-03-2019, MK, tag emdna-V10-05-04 <<
531 - Fix reaction site issue <<
532 - Chemistry: clarify pointer ownership, clean <<
533 <<
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 <<
535 - Fixed typos in printouts in G4MolecularConfi <<
536 G4VITRestProcess, G4DNAElectronHoleRecombina <<
537 <<
538 18-01-2019, HT, tag emdna-V10-05-02 <<
539 - Transformed the exception into warning in G4 <<
540 <<
541 28-12-2018, MK, tag emdna-V10-05-01 <<
542 DEV-300 : G4DNAChemistryManager clarify pointe <<
543 <<
544 05-01-2019, HT, tag emdna-V10-05-00 <<
545 - moved the checking position of track status <<
546 in G4ITStepProcessor::SetInitialStep() <<
547 <<
548 01-09-2018, SI, tag emdna-V10-04-10 <<
549 renamed tag <<
550 <<
551 01-09-2018, SI, tag emdna-v10-04-09 <<
552 - bugzilla 2084 <<
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id <<
554 <<
555 30-07-2018, SI, tag emdna-V10-04-08 <<
556 - included upper energy limit of models (2) <<
557 <<
558 29-07-2018, SI, tag emdna-V10-04-07 <<
559 - included upper energy limit of models <<
560 <<
561 01-07-2018, SI, tag emdna-V10-04-06 <<
562 - added protection in Auger emission <<
563 <<
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 <<
565 - updated Si mass in G4DNAGenericIonsManager <<
566 <<
567 22-06-2018, SI tag emdna-V10-04-04 <<
568 - fixed warnings in lepts models <<
569 <<
570 14-05-2018, SI tag emdna-V10-04-03 <<
571 - chemistry update by Mathieu <<
572 <<
573 01-05-2018, SI tag emdna-V10-04-02 <<
574 - chemistry update by Mathieu <<
575 <<
576 09-02-2018, M.Asai tag emdna-V10-04-01 <<
577 - G4DNAMolecularMaterial.cc : <<
578 GetDensityTableFor() and GetNumMolPerVolTabl <<
579 at G4State_Init rather than G4State_Idle. <<
580 - Co-works with run-V10-04-01 and global-V10-0 <<
581 <<
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 <<
583 - Fixed self-consistency in headers (missing # <<
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff <<
585 Fixed spurious definition of G4IT namespace <<
586 Thanks to Raphael Isemann for reporting thes <<
587 <<
588 01-11-2017, MK tag emdna-V10-03-30 <<
589 - remove models/test directory <<
590 <<
591 31-10-2017, JA ( tag missing ) <<
592 - G4KDNode.hh: Add missing included file - nee <<
593 <<
594 16-08-2017, SI tag emdna-V10-03-28 <<
595 - updated variable types in models <<
596 <<
597 10-08-2017, SI tag emdna-V10-03-27 <<
598 - test <<
599 <<
600 10-08-2017, SI tag emdna-V10-03-26 <<
601 - same as previous <<
602 <<
603 09-08-2017, SI tag emdna-V10-03-25 <<
604 - same as previous <<
605 <<
606 09-08-2017, SI tag emdna-V10-03-24 <<
607 - G4DNAEmfietzoglouIonisationModel: added prot <<
608 <<
609 03-08-2017, VI tag emdna-V10-03-23 <<
610 - G4DNAExcitation, G4DNAIonisation - make cohe <<
611 <<
612 28-07-2017, SI, tag emdna-V10-03-22 <<
613 - added stationary mode flag to CPA100 ionisat <<
614 <<
615 04-07-2017, SI, tag emdna-V10-03-21 <<
616 - added tagging of atom. deexc. products in io <<
617 <<
618 31-05-2017, SM, tag emdna-V10-03-20 <<
619 - Correct windows issues with path of diff. CS <<
620 <<
621 31-05-2017, SI, tag emdna-V10-03-19 <<
622 - roll-back (Windows issues with previous tag) <<
623 <<
624 24-05-2017, SI, tag emdna-V10-03-18 <<
625 - added tagging of atom. deexc. products in io <<
626 <<
627 11-05-2017, VI tag emdna-V10-03-17 <<
628 - fix for gcc 7.1 warnings in G4DNACrossSectio <<
629 <<
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 <<
631 - fix for gcc 7.1 warnings in G4DNACrossSectio <<
632 <<
633 03-05-2017, SM, tag emdna-V10-03-15 <<
634 - add the new G4DNADummyModel and allow the co <<
635 <<
636 27-04-2017, SM, tag emdna-V10-03-14 <<
637 - correct small typo mistakes. <<
638 <<
639 27-04-2017, SM, tag emdna-V10-03-13 <<
640 - update Models/G4DNAModelInterface to correct <<
641 <<
642 10-03-2017, MK, tag emdna-V10-03-12 <<
643 - update utils/GNUmakefile <<
644 <<
645 13-02-2017, MK, tag emdna-V10-03-11 <<
646 - G4DNAMolecularMaterial: update doxygen doc <<
647 <<
648 13-02-2017, MK, tag emdna-V10-03-10 <<
649 - G4DNAMolecularMaterial: <<
650 remove newly introduced methods, add fatal e <<
651 add doxygen documentation <<
652 <<
653 10-02-2017, MK, tag emdna-V10-03-09 <<
654 - Introducing G4PhysChemIO <<
655 - Move call to G4TrackList::Pop(track) from G4 <<
656 to G4ITTrackHolder. And make sure track stat <<
657 when G4ITTrackHolder::PushToKill is called. <<
658 19
659 09-02-2017, MK, tag emdna-V10-03-08 << 20 10-05-2017, NL, MK, SI
>> 21 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
>> 22
>> 23 09-02-2017, MK, tag emdna-V10-02-38
660 - G4KDNode.hh: remove unused G4ThreeVector hea 24 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation 25 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t 26 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization 27 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K 28 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665 29
666 24-01-2017, SM, tag emdna-V10-03-07 <<
667 - add a ifdef to remove a warning (windows onl <<
668 <<
669 23-01-2017, SM, tag emdna-V10-03-06 <<
670 - add missing G4DNAModelInterface files (.hh a <<
671 <<
672 23-01-2017, SM CV, tag emdna-V10-03-05 <<
673 - add new G4DNAPTB* classes and the structure <<
674 <<
675 14-01-2017, MK, tag emdna-V10-02-37 30 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingMan << 31 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction 32 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Schedule 33 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679 34
680 28-12-2016, SI, tag emdna-V10-03-04 <<
681 - extended upper energy limit of protons for <<
682 G4DNARuddIonisationExtendedModel <<
683 <<
684 27-12-2016, SI, tag emdna-V10-03-03 <<
685 - updated references of CPA100 classes <<
686 <<
687 23-12-2016, SI, tag emdna-V10-03-02 <<
688 - updated sources.cmake <<
689 <<
690 23-12-2016, SI, tag emdna-V10-03-01 <<
691 - commit of first CPA100 classes, part 2 <<
692 <<
693 21-12-2016, SI, tag emdna-V10-03-00 <<
694 - commit of first CPA100 classes <<
695 <<
696 27-11-2016, MK, tag emdna-V10-02-36 35 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 36 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 37 - G4DNADamages -> G4DNADamage
699 38
700 17-11-2016, MK, tag emdna-V10-02-35 39 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 40 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 41
703 16-11-2016, MK, tag emdna-V10-02-34 42 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat << 43 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 44 displacement types can be thread shared
706 - G4TrackState: Move implementation of static << 45 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 46 G4VTrackStateID::Create() to cc file - windows crash
708 47
709 15-11-2016, MK, tag emdna-V10-02-33 48 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 49 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 50
712 14-11-2016, MK, tag emdna-V10-02-32 51 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t << 52 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 53 windows platforms
715 54
716 14-11-2016, MK, tag emdna-V10-02-31 55 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: << 56 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 57 tag init constexpr factor with number rather than expression
719 58
720 14-11-2016, MK, tag emdna-V10-02-30 59 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 60 - Use CLHEP::pi instead of M_PI
722 61
723 14-11-2016, MK, tag emdna-V10-02-29 62 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 63 - Correct bracket enclosing
725 64
726 14-11-2016, MK, tag emdna-V10-02-28 65 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 66 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 67 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 68 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 69 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 70 - Adds and use G4CTCounter
732 71
733 02-11-2016, MK, tag emdna-V10-02-27 72 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom << 73 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 74 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo << 75 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety << 76 computeStep & computeSafety
738 77
739 07-08-2016, SI, tag emdna-V10-02-26 78 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 79 - added stationnary mode to sub-excitation electron processes
741 80
742 23-06-2016, MK 81 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 82 - G4Scheduler: move G4IosFlagsSaver to Process()
744 83
745 3-06-2016, MK, tag emdna-V10-02-25 84 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 85 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 86 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 87 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 88
750 3-06-2016, MK, tag emdna-V10-02-24 89 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 90 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 91 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 92 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 93 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 94 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 95 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc << 96 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 97 model used for another part than e-
759 98
760 1-06-2016, MK, tag emdna-V10-02-23 99 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 100 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 101 logic for interface with physics models
763 102
764 31-05-2016, MK, tag emdna-V10-02-22 103 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 104 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 105
767 28-05-2016, MK, tag emdna-V10-02-21 106 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 107 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 108 one of the previous tags
770 109
771 19-05-2016, MK, tag emdna-V10-02-20 110 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 111 - G4ITNavigator: remove warnings on gcc6.1
773 112
774 17-05-2016, MK, tag emdna-V10-02-19 113 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 114 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 115 correct model and process names for solvation
777 116
778 12-05-2016, MK, tag emdna-V10-02-18 117 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: << 118 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 119 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne << 120 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 121 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 122 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 123 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 124 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 125 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim << 126 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 127 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 128 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 129 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 130 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 131 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 132 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 133 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 134 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 135 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 136 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 137 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 138 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 139 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 140 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 141 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv << 142 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 143 created; otherwise, the primary electron is killed
805 144
806 30-04-2016, MK, tag emdna-V10-02-17 145 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 146 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 147
809 30-04-2016, MK, tag emdna-V10-02-16 148 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 149 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p << 150 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 151 unregistered molecule definition
813 152
814 22-04-2016, MK, tag emdna-V10-02-15 153 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 154 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 155 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 156
818 22-04-2016, MK, tag emdna-V10-02-14 157 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit << 158 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 159 remove usage of internal energy boundaries
821 160
822 19-03-2016, SI, tag emdna-V10-02-13 161 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 162 - added nrj extensibility to SR and USR models
824 163
825 11-03-2016, SI, tag emdna-V10-02-12 164 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 165 -roll back to files in emdna-V10-02-06
827 166
828 10-03-2016, SI, tag emdna-V10-02-11 167 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 168 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 169 and G4DNAScreenedRutherfordElasticModel
831 170
832 10-03-2016, SI, tag emdna-V10-02-10 171 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 172 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 173
835 07-03-2016, SI, tag emdna-V10-02-09 174 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 175 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 176 of G4DNAUeharaScreenedRutherfordElasticModel
838 177
839 06-03-2016, SI, tag emdna-V10-02-08 178 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 179 -removed useless G4Pow declaration
841 180
842 04-03-2016, SI, tag emdna-V10-02-07 181 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 182 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 183 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 184
846 02-03-2016, SI, tag emdna-V10-02-06 185 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 186 -replaced std::exp by G4Exp
848 187
849 02-03-2016, SI, tag emdna-V10-02-05 188 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 189 -replaced std::exp by G4Exp
851 190
852 02-03-2016, SI, tag emdna-V10-02-04 191 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 192 -replaced std::exp by G4Exp
854 193
855 01-03-2016, SI, tag emdna-V10-02-03 194 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 195 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 196 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 197 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 198 by S. Okada (KEK, JP)
860 199
861 17-02-2016, MK, tag emdna-V10-02-02 200 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 201 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 202
864 16-12-2015, SI, tag emdna-V10-02-01 203 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: << 204 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 205 added protection on energy for interpolation method change
867 206
868 16-12-2015, SI, tag emdna-V10-02-00 207 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add << 208 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 209 energy
871 210
872 13-11-2015, MK, tag emdna-V10-01-55 211 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 212 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 213 file
875 214
876 10-11-2015, MK, tag emdna-V10-01-54 215 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 216 * remove unused variables
878 217
879 10-11-2015, MK, tag emdna-V10-01-53 218 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 219 * Coverity fixes
881 220
882 06-11-2015, MK, tag emdna-V10-01-52 221 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 222 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 223
885 06-11-2015, MK, tag emdna-V10-01-51 224 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 225 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 226 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 227
889 06-11-2015, MK, tag emdna-V10-01-50 228 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 229 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 230 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 231 * Add G4ITStepProcessorState_Lock.hh
893 232
894 06-11-2015, MK, tag emdna-V10-01-49 233 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 234 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 235 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 236 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 237 but in the source file - causing crashes on windows
899 238
900 04-11-2015, MK, tag emdna-V10-01-48 239 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 240 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 241 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 242 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 243 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 244 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 245 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 246 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 247 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 248 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using << 249 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 250 all dissociation products have been defined (they will just not be taken
912 into account) 251 into account)
913 * G4DNAMolecularReactionTable: delete reaction 252 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 253
915 03-11-2015, MK, tag emdna-V10-01-47 254 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 255 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac << 256 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 257 the call
919 258
920 03-11-2015, MK, tag emdna-V10-01-46 259 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 260 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 261 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 262 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 263 (causing navigator complains)
925 << 264
926 03-11-2015, MK, tag emdna-V10-01-45 265 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 266 * G4Serialize: Add definition in header for G4String
928 267
929 02-11-2015, MK, tag emdna-V10-01-44 268 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 269 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 270 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 271 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 272 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon << 273 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 274 -> G4MolecularConfMan is taking care of this
936 << 275
937 30-10-2015, MK, tag emdna-V10-01-43 276 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter << 277 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 278 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 279 * Unit tests corrected
941 * G4VITDiscreteProcess added 280 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 281 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 282 * Intermediate update for 10.2 release
944 << 283
945 27-10-2015, MK, tag emdna-V10-01-42 284 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 285 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 << 286
948 26-10-2015, MK, tag emdna-V10-01-41 287 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 288 * Sanche model: try to solve std::vector out of bounds
950 289
951 23-10-2015, MK, tag emdna-V10-01-40 290 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 291 * remove all CLHEP::shared_ptr usage
953 << 292
954 23-10-2015, CV, SM, tag emdna-V10-01-39 293 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel << 294 * Addded base class G4VDNAPTBModel
956 295
957 28-09-2015, SI, tag emdna-V10-01-38 296 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 297 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 298
960 19-09-2015, MK, tag emdna-V10-01-37 299 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 300 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 301 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 302
964 17-09-2015, MK, tag emdna-V10-01-36 303 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 304 * G4MoleculeGun: Remove compilation warnings
966 305
967 04-09-2015 MK, tag emdna-V10-01-35 306 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 307 * Fix G4MoleculeGun compilation errors
969 308
970 03-09-2015 SI, tag emdna-V10-01-34 309 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 310 * Added stationary regime to all inelastic models
972 311
973 19-08-2015, MK 312 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 313 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 314 - compatible with both Smoluchowski & Gillespie models
976 315
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 316 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 317 * Added easier handling of cumulative proba. in SR elastic models
979 318
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 319 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 320 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 321 declaration of G4MoleculeShoot.
983 322
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 323 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 324 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 325 declaration of G4MoleculeShootMessenger.
987 326
988 12-08-2015, MK, tag emdna-V10-01-29 327 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 328 * Add G4Serialize in the build tree temporarily
990 329
991 12-08-2015, MK, tag emdna-V10-01-28 330 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 331 * G4Serialize added
993 332
994 12-08-2015, MK 333 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 334 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 335
997 24-07-2015, MK 336 24-07-2015, MK
998 - G4MolecularReactionTable 337 - G4MolecularReactionTable
999 * Add get methods 338 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 339 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 340 * Molecule gun : place randomly in a box
1002 341
1003 15-07-2015, MK 342 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA << 343 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 344 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 345 * processes & models initialisation again
1007 346
1008 15-07-2015, MK, tag emdna-V10-01-26 347 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 348 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 349 * add macro to prevent warnings in non-verbose mode
1011 350
1012 11-07-2015, MK, tag emdna-V10-01-25 351 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 352 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 353 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 354
1016 10-07-2015, MK, tag emdna-V10-01-24 355 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 356 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 357 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 358 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 359 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 360
1022 08-07-2015, MK, tag emdna-V10-01-23 361 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 362 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 363 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 364 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose << 365 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 << 366 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 367 - G4MoleculeDefinition:
1029 ::SetFormatedName added 368 ::SetFormatedName added
1030 ::NewConfiguration methods added 369 ::NewConfiguration methods added
1031 ::NewConfiguration added 370 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 371 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 372 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 373 ::Finalize added
1035 - G4MolecularConfiguration: << 374 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 375 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 376 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 377 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec << 378 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula << 379 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 380 than molecule models
1042 - G4Molecule add constructor where only G4Mol 381 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 382 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 383 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 384 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 385 - G4DNAElectronHoleRecombination added
1047 386
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 387 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c << 388 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 389 fasterCode usage on shell selection.
1051 390
1052 26-06-2015, MK 391 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to << 392 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 393 warning message description
1055 394
1056 16-06-205, MK 395 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 396 - Add G4Scheduler::GetGun()
1058 397
1059 16-06-2015, MK, tag emdna-V10-01-21 398 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 399 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 400 - G4DNAIonElasticModel: clean and fix double free
1062 401
1063 12-06-2015, MK, tag emdna-V10-01-20 402 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 403 - remove virtual keyword from G4IT::GetPosition()
1065 404
1066 04-06-2015, MK 405 04-06-2015, MK
1067 - just cosmetics 406 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 407 - remove virtual keyword from G4IT::operator[]
1069 408
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 409 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 410 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 411 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 412 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 413 - Fully qualify std::string elsewhere as needed to adjust
1075 414
1076 22-05-2015, John Allison, tag emdna-V10-01-18 415 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 416 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 417 "G4Threading::IsMasterThread()".
1079 418
1080 17-05-2015, MK, tag emdna-V10-01-17 419 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 420 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 421 - Correct sources.cmake
1083 - Born headears: includes both model versions << 422 - Born headears: includes both model versions when proxy header is included
1084 423
1085 16-05-2015, MK, tag emdna-V10-01-16 424 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 425 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 426 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 427 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 428 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 429 - Add G4DNABornExcitationModel2 (temporary)
1091 430
1092 15-05-2015, MK, tag emdna-V10-01-15 431 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 432 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 433
1095 14-05-2015, MK, tag emdna-V10-01-14 434 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 435 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 436
1098 14-05-2015, MK, tag emdna-V10-01-13 437 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 438 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 439 - G4ITReaction: try to solve compilation error
1101 440
1102 12-05-2015, MK, tag emdna-V10-01-12 441 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 442 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 443
1105 12-05-2015, MK, tag emdna-V10-01-11 444 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 445 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 446
1108 11-05-2015, MK, tag emdna-V10-01-10 447 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 448 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 449 +Add GetPartialCrossSection
1111 +Code cleaning 450 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 451 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 452 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 453 - G4DNAChemistryManager::GetValue(...) added
1115 454
1116 02-05-2015, MK 455 02-05-2015, MK
1117 - Update G4TrackState & related classes 456 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: << 457 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian << 458 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 459 +comment useless method
1121 - G4Scheduler: << 460 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS << 461 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime << 462 +remove fTmpEndTime
1124 +Add CanICarryOn 463 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 464 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 465
1127 18-03-2015, MK, tag emdna-V10-01-08 466 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 467 - Same as before, just add the missing History file
1129 468
1130 18-03-2015, MK, tag emdna-V10-01-07 469 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 470 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 471 instead of a reference
1133 472
1134 12-02-2015, MK, tag emdna-V10-01-06 473 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 474 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 475 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi << 476 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 477
1139 11-02-2015, MK, tag emdna-V10-01-05 478 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 479 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 480 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 481 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 482
1144 16-01-2015, SI, tag emdna-V10-01-04 483 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 484 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 485
1147 14-12-2014, MK, tag emdna-V10-01-03 486 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 487 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval << 488 - ScreenRutherfordElastic: correct retrieval of water density
1150 489
1151 13-12-2014, SI, tag emdna-V10-01-02 490 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 491 - Added elastic model by H. Tran.
1153 492
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 493 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 494 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 495 to allow for compilation on Linux/clang-3.5.
1157 496
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 497 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 498 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 499 include missing files:
1161 G4ITTransportationManager.icc 500 G4ITTransportationManager.icc
1162 G4KDNode.icc 501 G4KDNode.icc
1163 G4KDTree.icc 502 G4KDTree.icc
1164 G4MoleculeFinder.hh 503 G4MoleculeFinder.hh
1165 504
1166 01-12-2014, MK, tag emdna-V10-00-63 505 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 506 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 507 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 508 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 509 when the particle has reached a boundary
1171 510
1172 28-11-2014, MK, tag emdna-V10-00-62 511 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 512 - Retag
1174 513
1175 28-11-2014, MK, tag emdna-V10-00-61 514 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 515 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 516 - Fix Brownian navigation
1178 - Some fixes related to scheduler 517 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 518 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 519 - Enhance comments
1181 520
1182 24-11-2014, MK, tag emdna-V10-00-60 521 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 522 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 523
1185 24-11-2014, MK, tag emdna-V10-00-59 524 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 525 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 526 - Remove useless verbose
1188 - Try to compile on all platforms 527 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 528 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 529 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 530 Just registering constructor is enough to initialized the chemistry
1192 531
1193 24-11-2014, MK, tag emdna-V10-00-58 532 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 533 - G4FastList: remove all friend declarations
1195 534
1196 22-11-2014, MK, tag emdna-V10-00-57 535 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 536 - Another attempt to compile G4FastList on all platforms
1198 537
1199 22-11-2014, MK, tag emdna-V10-00-56 538 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 539 - Attempt to compile G4FastList on all platforms
1201 540
1202 21-11-2014, MK, tag emdna-V10-00-55 541 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 542 - Attempt to compile G4FastList with clang
1204 543
1205 21-11-2014, MK, tag emdna-V10-00-54 544 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 545 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou << 546 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 547 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 548 - Update G4ITNavigator2 to the G4Navigator of John
1210 549
1211 21-11-2014, MK, tag emdna-V10-00-53 550 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b << 551 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 552 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 553 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time << 554 is false by default --> uses the random time computation for crossing
1216 boundaries 555 boundaries
1217 556
1218 20-11-2014, SI, tag emdna-V10-00-52 557 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 558 - Improved error message for missing data in PW elastic model
1220 559
1221 08-11-2014, MK, tag emdna-V10-00-51 560 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 561 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 562 when the asked item is not found
1224 563
1225 03-11-2014 MK, tag emdna-V10-00-50 564 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 565 - correct track creation by G4MoleculeGunMessenger
1227 566
1228 03-11-2014 MK, tag emdna-V10-00-49 567 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 568 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 569 - Correct a bug in G4MoleculeGun
1231 570
1232 28-10-2014 PA, tag emdna-V10-00-48 571 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 572 - correct compilation warnings
1234 573
1235 28-10-2014 PA, tag emdna-V10-00-47 574 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 575 - correct compilation warnings
1237 576
1238 28-10-2014 PA, tag emdna-V10-00-46 577 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 578 - correction in sources.cmake
1240 579
1241 28-10-2014 PA, tag emdna-V10-00-45 580 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 581 - retag to add LEPTS
1243 582
1244 28-10-2014 PA, tag emdna-V10-00-44 583 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 584 - add LEPTS
1246 585
1247 25-10-2014 MK, tag emdna-V10-00-43 586 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 587 - remove useless G4VITScheduler
1249 588
1250 25-10-2014 MK, tag emdna-V10-00-42 589 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 590 - correct warnings
1252 591
1253 24-10-2014 MK, tag emdna-V10-00-41 592 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 593 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 594 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 595 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 596 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 597 - G4ITFinder added
1259 - G4VITTrackHolder added 598 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 599 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 600 - code cleaned + useless classes removed
1262 601
1263 24-10-2014 MK, tag emdna-V10-00-40 602 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 603 - G4ITStepManager: remove verbose at closure time
1265 604
1266 21-10-2014 MK, tag emdna-V10-00-39 605 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 606 - try to solve crash at closure time
1268 607
1269 21-10-2014 MK, tag emdna-V10-00-38 608 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 609 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 610 table when deleted
1272 - update disclaimer 611 - update disclaimer
1273 612
1274 17-10-2014 MK, tag emdna-V10-00-37 613 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 614 - clean code
1276 - G4ITStepManager: one can ask why simulation 615 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 616 - remove useless verbose
1278 617
1279 17-10-2014 MK, tag emdna-V10-00-36 618 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 619 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 620 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 621 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 622
1284 10-10-2014 MK, tag emdna-V10-00-35 623 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 624 Avoid use of std::map at the application level in TimeStepAction
1286 625
1287 07-10-2014 MK, tag emdna-V10-00-34 626 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 627 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 628 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 629 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 630
1292 07-10-2014 MK, tag emdna-V10-00-33 631 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 632 Initialize G4ITStepManager in G4DNAChemistryManager
1294 633
1295 17-09-2014 MK, tag emdna-V10-00-32 634 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 635 Add G4ITStepManager + messenger
1297 Tag before architecture change 636 Tag before architecture change
1298 637
1299 12-07-2014 SI, tag emdna-V10-00-31 638 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 639 Removed obsolete class for electron excitation
1301 640
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 641 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 642 - Get rid of obsolete 'register' keyword in code.
1304 643
1305 05-06-2014 SI, tag emdna-V10-00-29 644 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 645 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D << 646 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 647 G4GenericIon usage
1309 - requires G4EMLOW6.39 648 - requires G4EMLOW6.39
1310 649
1311 04-06-2014 MK, tag emdna-V10-00-28 650 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 651 Remove directory management/include/impl
1313 Prepare for release 652 Prepare for release
1314 653
1315 04-06-2014 MK, tag emdna-V10-00-27 654 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 655 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 656 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 657 Avoid usage of molecule iterators as pointers
1319 658
1320 03-06-2014 SI, tag emdna-V10-00-26 659 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 660 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 661
1323 28-05-2014 VI, SI tag emdna-V10-00-25 662 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 663 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 664 Ionisation models switch to use angular generator
1326 interface 665 interface
1327 666
1328 12.05.2014 MK, tag emdna-V10-00-24 667 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 668 Try to remove warnings 4
1330 669
1331 12.05.2014 MK, tag emdna-V10-00-23 670 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 671 Try to remove warnings 3
1333 672
1334 12.05.2014 MK, tag emdna-V10-00-22 673 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 674 Try to remove warnings 2
1336 675
1337 12.05.2014 MK, tag emdna-V10-00-21 676 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 677 Try to remove warnings
1339 678
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 679 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx << 680 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 681 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 682 G4EMLOW6.38 needed
1344 683
1345 07-04-2014 SI tag emdna-V10-00-19 684 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 685 Changed faster method interpolation in
1347 G4DNABornIonisationModel << 686 G4DNABornIonisationModel
1348 687
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 688 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 689 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 690 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 691 Corrected order of inclusion of some headers and use of <>/"".
1353 692
1354 04-04-2014 MK tag emdna-V10-00-17 693 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 694 Try to solve warnings when G4VERBOSE is off
1356 695
1357 02-04-2014 MK tag emdna-V10 696 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 697 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 698
1360 02-04-2014 MK tag emdna-V10 699 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 700 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 701
1363 02-04-2014 MK tag emdna-V10 702 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 703 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 704 -> this part is withdrawn for now
1366 705
1367 02-04-2014 MK tag emdna-V10 706 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 707 - version 2 : try fixing the build error on mac
1369 708
1370 02-04-2014 MK tag emdna-V10 709 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 710 - version 1 : try to fix build errors and warnings on mac
1372 711
1373 02-04-2014 MK tag emdna-V10 712 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 713 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 714 (G4MemStat & G4MolecularConfiguration)
1376 715
1377 02-04-2014 MK tag emdna-V10 716 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 717 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 718 (problem coming from having as a friend class a template argument)
1380 719
1381 02-04-2014 MK tag emdna-V10 720 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla << 721 - try to fix build error on windows platform
1383 722
1384 01-04-2014 MK tag emdna-V10 723 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 724 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 725 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 726
1388 01-04-2014 MK tag emdna-V10 727 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 728 - reset CMakeLists.txt
1390 729
1391 01-04-2014 MK tag emdna-V10 730 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 731 - update chemistry
1393 732
1394 01-04-2014 SI tag emdna-V10-00-05 733 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 734 - Modified calculation of secondary kinetic for fast code
1396 735
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 736 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 737 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 738 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 739 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 740
1402 25-03-2014 VS, SI tag emdna-V10-00-03 741 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 742 - Added several clear() to vectors for MT
1404 743
1405 17-03-2014 SI tag emdna-V10-00-02 744 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc << 745 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 746 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 747 to be used with G4EMLOW6.36
1409 748
1410 12-12-2013 M.K tag emdna-V10-00-01 749 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 750 - G4DNAMolecularMaterial: Remove unused variable
1412 751
1413 12-12-2013 M.K tag emdna-V10-00-00 752 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to << 753 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 754 a model is not created at initialisation time
1416 755
1417 21-11-2013 V.I. tag emdna-V09-06-22 756 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 757 - G4ITStepProcessor2 - removed obsolete unused header
1419 758
1420 01-11-2013 M.K tag emdna-V09-06-21 759 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 760 - Correct incorrect singleton check introduced in previous tag
1422 761
1423 01-11-2013 M.K tag emdna-V09-06-20 762 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 763 - Prepare for release bis
1425 764
1426 01-11-2013 M.K tag emdna-V09-06-19 765 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 766 - Prepare for release
1428 767
1429 10-10-2013 M.K. tag emdna-V09-06-18 768 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 769 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 770
1432 06-10-2013 M.K. tag emdna-V09-06-17 771 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 772 - Same as before once again
1434 773
1435 03-10-2013 M.K. tag emdna-V09-06-16 774 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 775 - Same as before
1437 776
1438 03-10-2013 M.K. tag emdna-V09-06-15 777 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 778 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t << 779 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 780 by the user - stage 1
1442 781
1443 14-09-2013 M.Asai tag emdna-V09-06-14 782 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 783 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 784 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 785 with virtual keyword in G4VITProcess.
1447 786
1448 12-09-2013 M.K. tag emdna-V09-06-13 787 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 788 Correction of an inadvertent modification introduced in previous tag
1450 789
1451 12-09-2013 M.K. tag emdna-V09-06-12 790 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 791 Correct bound checks in G4ITManager.icc
1453 792
1454 16-08-2013 S.I. tag emdna-V09-06-11 793 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 794 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 795
1457 16-08-2013 S.I. tag emdna-V09-06-10 796 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 797 Added G4DNAIons
1459 798
1460 25-06-2013 M.K. tag emdna-V09-06-09 799 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 800 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet << 801 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 802 auto_ptr according to c++ std version
1464 803
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 804 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 805 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 806 for problem accidentally introduced in previous tag.
1468 807
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 808 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 809 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 810 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 811 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 812 compilation on Windows.
1474 813
1475 06-06-2013 S.I. tag emdna-V09-06- 814 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 815 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 816 Requires G4EMLOW version 6.33
1478 817
1479 25-05-2013 M.K. tag emdna-V09-06- 818 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 819 *Fix warning compilation in G4KDMap for specific gcc version
1481 820
1482 24-05-2013 M.K. tag emdna-V09-06- 821 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi << 822 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 823 but still not in usage
1485 824
1486 23-05-2013 M.K. tag emdna-V09-06- 825 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 826 * G4KDMap : try fix error on std:ceil call on windows
1488 827
1489 23-V09-06-03-05-2013 M.K. tag emd 828 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 829 * G4KDMap : used deque::iterator
1491 830
1492 831
1493 22-05-2013 M.K. tag emdna-V09-06- 832 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 833 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 834 * G4KDMap : pop out elements from map
1496 835
1497 22-05-2013 M.K. tag emdna-V09-06-00 836 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global << 837 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager << 838 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 839 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 840 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 841 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 842 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali << 843 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes << 844 intialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI << 845 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 846
1508 12-11-2012 M.K tag emdna-V09-05- 847 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 848 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 849 coverity warnings (rev 64993)
1511 850
1512 06-11-2012 G.Cosmo tag emdna-V09 851 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 852 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 853 for objects in maps...
1515 854
1516 04-11-2012 M.K. tag emdna-V09-05-33 855 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 856 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 857 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 858 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 859 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 860 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 861 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 862 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 863 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 864 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 865 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 866 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 867 add "else" before "if" statements and
1529 add variables to avoid ma 868 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 869 dna.files : update files (rev 64725)
1531 870
1532 03-11-2012 S.I. tag emdna-V09-05-32 871 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 872 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 873 classes
1535 874
1536 24-10-2012 M.K tag emdna-V09 875 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 876 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 877 (previously commented)
1539 878
1540 23-10-2012 M.K tag emdna-V09 879 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 880 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 881 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 882
1544 18-10-2012 M.K tag emdna-V09 883 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 884 Previous tag did not include history changes
1546 885
1547 18-10-2012 M.K tag emdna-V09 886 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 887 Remove warning
1549 888
1550 17-10-2012 M.K tag emdna-V09 889 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 890 Correct a typo from previous tag
1552 891
1553 17-10-2012 M.K tag emdna-V09 892 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 893 Correct information in headers
1555 Rename G4DNADiffustionControlledM 894 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 895 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 896
1558 01-10-2012 SI, P.Pater tag emdna-V09 897 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 898 Force kinetic energy to zero for real killings in models.
1560 899
1561 12-07-2012 G.Cosmo tag emdna-V09 900 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 901 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 902 constants, in plan to remove implicit inclusion from globals.hh.
1564 903
1565 11.07.2012 M.K tag emdna-V09 904 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 905 Correct warnings introduce in previous tag
1567 906
1568 11.07.2012 M.K tag emdna-V09 907 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 908 Tag to be proposed
1570 909
1571 25.06.2012 M.K tag emdna-V09-05-21 910 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 911 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 912 Modify molecule's name
1574 << 913
1575 21.06.2012 S.I tag emdna-V09-05-20 914 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte << 915 Update of electron elastic scattering low limit
1577 916
1578 09.06.2012 M.K tag emdna-V09-05-19 917 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 918 Fixed shadowing
1580 919
1581 04.06.2012 M.K tag emdna-V09-05-18 920 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 921 Add G4ITTrackingInteractivity + correct coverity warnings
1583 922
1584 24.05.2012 M.K tag emdna-V09-05-17 923 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 924 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 925
1587 23.05.2012 M.K tag emdna-V09-05-16 926 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 927 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 928 G4ITStepManager
1590 Prevent call of destructor of G4I 929 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 930 G4DNAChemistryManager
1592 931
1593 23.05.2012 M.K tag emdna-V09-05-15 932 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 933 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 934 when one of its methods is called using a material that is
1596 not defined as a molecule 935 not defined as a molecule
1597 936
1598 21.05.2012 M.K tag emdna-V09-05-14 937 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 938 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 939 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 940 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 941 Modify all models to use G4DNAMolecularMaterial
1603 942
1604 14.05.2012 M.K tag emdna-V09-05-13 943 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 944 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 945 Add G4DNADamages
1607 946
1608 10.05.2012 M.K tag emdna-V09-05-12 947 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 948 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 949 from UserReactionAction::EndProcessing()
1611 950
1612 08.05.2012 M.K tag emdna-V09-05-11 951 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 952 Use inverseErf from CLHEP
1614 953
1615 03.05.2012 M.K tag emdna-V09-05-10 954 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 955 Add erfc function for windows compilator (VC++)
1617 956
1618 03.05.2012 M.K tag emdna-V09-05-09 957 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 958 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 959
1621 03.05.2012 M.K tag emdna-V09-05-08 960 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 961 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 962 Add new methods in G4ChemistryManager :
1624 - PushMolecule 963 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 964 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 965 Reset() at the end of G4ITStepManager::Process()
1627 966
1628 30.03.2012 M.K tag emdna-V09-05-07 967 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 968 Same as emdna-V09-05-06
1630 969
1631 30.03.2012 M.K tag emdna-V09-05-06 970 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 971 1) Add separate navigator for synchronous tracking
1633 New classes : 972 New classes :
1634 * G4ITTransportationManager 973 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 974 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 975 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 976 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 977 3) Solve bugs with normal and brownian ITTransportation
1639 978
1640 14.03.2012 M.K tag emdna-V09-05-05 979 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 980 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 981 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 982 -> become size_t + related changes
1644 * when a poststep process propo 983 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 984 => considered as a time, and transportation::computestep
1646 is used 985 is used
1647 986
1648 14.03.2012 M.K tag emdna-V09-05-04 987 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 988 Fix compilation warning
1650 989
1651 14.03.2012 M.K tag emdna-V09-05-03 990 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 991 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 992 Fix coverity warnings
1654 993
1655 18.01.2012 S.I. tag emdna-V09 994 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 995 Removal of G4Water* classes in utils
1657 996
1658 11.01.2012 M.K tag emdna-V09 997 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 998 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 999 concerning the final position of the solvated electron
1661 using Sanche thermalization 1000 using Sanche thermalization
1662 1001
1663 16.12.2011 S.I tag emdna-V09 1002 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 1003 Updated source of cross section file for elastic scattering
1665 1004
1666 25.11.2011 M.K tag emdna-V09 1005 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 1006 Correct a typo in previous tag
1668 1007
1669 25.11.2011 M.K tag emdna-V09 1008 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 1009 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 1010 rather than center of mass in DNAMolecularReaction
1672 1011
1673 21.11.2011 M.K tag emdna-V09 1012 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 1013 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 1014 avoid conflicts with ROOT.
1676 Add short class description (comm 1015 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 1016 in JavaDoc style for doxygen use.
1678 1017
1679 21.11.2011 M.K tag emdna-V09 1018 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1019 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1020 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1021 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1022 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1023 when the time steps returned by the time stepper
1685 and the processes are equal 1024 and the processes are equal
1686 Improve verbose 1025 Improve verbose
1687 1026
1688 21.11.2011 M.K tag emdna-V09 1027 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1028 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1029 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1030 Correct verbose in new models & process
1692 1031
1693 18.11.2011 M.K tag emdna-V09 1032 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl << 1033 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1034 in G4DNAChemistryManager
1696 1035
1697 18.11.2011 M.K tag emdna-V09 1036 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1037 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1038 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1039 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1040
1702 15.11.2011 G.Cosmo tag emdna-V09 1041 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1042 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1043 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1044 Windows.
1706 Fixed compilation warning on icc 1045 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1046 G4MolecularDecayTable.cc
1708 1047
1709 10.11.2011 M.K. tag emdna-V09 1048 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1049 Fix a bug in G4DNATransformElectronModel
1711 1050
1712 10.11.2011 M.K. tag emdna-V09 1051 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1052 Clean classes for release
1714 Add comment into source 1053 Add comment into source
1715 Change name of some methods 1054 Change name of some methods
1716 Transform two independent singlet 1055 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1056 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1057 (ITStepMan + DNAChemMan)
1719 1058
1720 10.11.2011 M.K. tag emdna-V09 1059 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1060 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1061 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1062 the chemistryManager.
1724 1063
1725 09.11.2011 M.K. tag emdna-V09 1064 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1065 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1066 in G4TrackListNode.
1728 Simplify and improve the use of d 1067 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1068 Add more convenient methods in userReactionAction
1730 1069
1731 08.11.2011 M.K. tag emdna-V09 1070 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1071 Fix coverity warnings
1733 1072
1734 07.11.2011 M.K. tag emdna-V09 1073 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1074 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1075 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1076 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1077 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1078 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1079 Clean classes for release
1741 1080
1742 03.11.2011 M.K. tag emdna-V09 1081 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1082 Add dna libs in sources.cmake
1744 1083
1745 03.11.2011 M.K. tag emdna-V09 1084 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1085 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1086 Add dna includes in sources.cmake
1748 << 1087
1749 01.11.2011 M.K. tag emdna-V09 1088 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1089 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1090 G4ITTransportation, G4TrackList on Windows
1752 1091
1753 01.11.2011 G.Cosmo 1092 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1093 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1094 updated GNUMakefiles to have it properly defined.
1756 1095
1757 31.10.2011 M.K tag emdna-V09-04-35 1096 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1097 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1098 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives << 1099 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1100 Fix windows compilation errors & warnings
1762 1101
1763 28.10.2011 M.K tag emdna-V09-04-34 1102 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1103 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1104 Plus remove obsolete G4Exception
1766 1105
1767 28.10.2011 M.K tag emdna-V09-04-33 1106 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1107 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1108 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1109 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1110 to models
1772 1111
1773 27.10.2011 M.K tag emdna-V09-04-32 1112 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1113 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1114 coverity errors.
1776 1115
1777 26.10.2011 M.K tag emdna-V09-04-31 1116 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared << 1117 change std::shared_ptr to CLHEP::shared_ptr
1779 1118
1780 26.10.2011 M.K. tag emdna-V09-04-30 1119 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1120 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1121 G4MolecularConfiguration::fManager added
1783 1122
1784 26.10.2011 M.K. tag emdna-V09-04-29 1123 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1124 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1125 Add electron solvatation process & models
1787 Add chemical processes 1126 Add chemical processes
1788 1127
1789 21.10.2011 M.K. tag emdna-V09-04-28 1128 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model << 1129 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1130 emdna-V09-04-24
1792 << 1131
1793 21.10.2011 M.K. tag emdna-V09-04-27 1132 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1133 CMake fixes from emdna-V09-04-24
1795 << 1134
1796 21.10.2011 M.K. tag emdna-V09-04-26 1135 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous << 1136 Bug fixes and new dev from the previous tag
1798 1137
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1138 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1139 Extension of ionisation by HZE proposed by Z. Francis
1801 1140
1802 20.10.2011 M.K. tag emdna-V09-04-24 1141 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1142 Bug fixes and new dev from the previous tag
1804 << 1143
1805 07.10.2011 M.K. tag emdna-V09-04-23 1144 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files << 1145 First tag with "molecules" files
1807 << 1146
1808 07.10.2011 M.K. tag emdna-V09-04-22 1147 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1148 Add molecules+management directory
1810 First tag with "management" files 1149 First tag with "management" files
1811 1150
1812 09.09.2011 G.Folger tag emdna-V09 1151 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer << 1152 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc << 1153 G4DNAMoleculeManager.cc
1815 1154
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1155 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1156 Updated sources.make and CMakeLists.txt
1818 1157
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1158 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1159 Reorganized whole architecture.
1821 1160
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1161 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1162 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1163 if no deexcitation)
1825 1164
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1165 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1166 Changed code (em0006) numbering for G4Exception
1828 1167
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1168 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1169 Switched to new G4Exception syntax
1831 1170
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1171 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1172 Added enhanced debug information in ionisation models
1834 1173
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1174 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1175 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1176
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1177 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1178 Removed obsolete information.
1840 1179
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1180 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1181 Updated deexcitation initialization in ionization models.
1843 1182
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1183 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1184 Coverity warnings removal
1846 1185
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1186 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1187 - Increased energy limits for
1849 G4DNAChargeIncrease 1188 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1189 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1190 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1191 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1192 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade << 1193 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1194 of ionisation classes for Auger e-
1856 1195
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1196 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1197 Further compilation warnings removal
1859 1198
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1199 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1200 Compilation warnings removal
1862 1201
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1202 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1203 added Atomic Deexcitation to Ionisation Models
1865 1204
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1205 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1206 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1207 G4DNADingfelderChargeIncreaseModel.cc.
1869 1208
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1209 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1210 Changed process sub-type numbering.
1872 1211
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1212 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1213 Fixed coverity warnings.
1875 1214
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1215 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1216 Updated all models for handling of variable density.
1878 1217
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1218 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1219 Addition of dependencies to configuration files.
1881 1220
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1221 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1222 Addition of all files.
1884 1223
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1224 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1225 Creation of dna sub-package in electromagnetic category.