| Geant4 Cross Reference |
1 # Category emdna History << 1 =========================================================
2 << 2 Geant4 - an Object-Oriented Toolkit for Simulation in HEP
3 See `CONTRIBUTING.rst` for details of **requir << 3 =========================================================
4 which **must** added in reverse chronological << 4
5 It must **not** be used as a substitute for wr << 5 Category History file
6 << 6 ---------------------
7 ---------------------------------------------- << 7 This file should be used by G4 developers and category coordinators
8 << 8 to briefly summarize all major modifications introduced in the code
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) << 9 and keep track of all category-tags.
10 - missing value in DNA PTB Ionization Structur << 10 It DOES NOT substitute the CVS log-message one should put at every
11 - missing GetMaterial() in DNA PTB Excitation << 11 committal in the CVS repository !
12 << 12
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) << 13 ----------------------------------------------------------
14 - Modified the molecule names of OH, HO2, O in << 14 * Reverse chronological order (last date on top), please *
15 Each molecule configuration has a molecule d << 15 ----------------------------------------------------------*
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with <<
35 of std::function in G4OctreeFinder. <<
36 <<
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) <<
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with <<
51 Added missing declarations for TG4MoleculeSh <<
52 Based on [GitHub PR#69](https://github.com/G <<
53 <<
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) <<
106 - Use G4FindDataDir to access data libraries i <<
107 <<
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) <<
109 - correct fastercode section for dna opt6 <<
110 <<
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) <<
112 - correct scavenger counter for oxygen <<
113 <<
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) <<
115 - Fixed the K shell bug in G4DNARuddIonisation <<
116 <<
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) <<
118 - improved equilibrium processes, introduced G <<
119 <<
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) <<
121 - In navigation classes, removed references to <<
122 which is now deprecated. <<
123 <<
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) <<
125 - Removed references to unused G4GRSSolid and <<
126 <<
127 ## 2023-08-29 (emdna-V11-01-18) <<
128 - Fix minor/obvious Coverity issues <<
129 <<
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) <<
131 - Apply core clang-tidy fixes plus those for <<
132 - Cons/destructor modernization <<
133 - Readability and logic for conditionals/boo <<
134 <<
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) <<
136 - Apply patch from [GitHub PR 58](https://gith <<
137 - Use std::erfc to avoid precision loss <<
138 - Remove unused header <<
139 <<
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) <<
141 - minor correction for DNA material in option6 <<
142 <<
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) <<
144 - use analytical method for DNA material in op <<
145 <<
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 <<
147 - G4DNARuddIonisationExtendedModel - model re- <<
148 threads, applicable for scaled energy interv <<
149 an ion data is not available proton x-sectio <<
150 used, sampling of delta-electron is done usi <<
151 <<
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) <<
153 - Modified DNA cross section file name to new <<
154 <<
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) <<
156 - Add DNA cross section to dna_option6 <<
157 <<
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) <<
159 - Fix Compilation warnings on XCode <<
160 <<
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) <<
162 - correct the initial values of G4DNAEventSche <<
163 <<
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) <<
165 - add time structure (pulsed beam) to water ra <<
166 <<
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) <<
168 - correct KDTree bug <<
169 <<
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) <<
171 - icsd physicslist: deleted unused model, <<
172 - Apdated RegisterModel function with new stru <<
173 - added model data to G4DNAMaterialManager sin <<
174 <<
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) <<
176 - Fixed compilation warning on macOS/XCode for <<
177 in G4DNAVacuumModel::Initialise(). <<
178 <<
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) <<
180 - Introduced G4DNAMaterialManager to manage av <<
181 and keeps DNA cross section data in one thread <<
182 - minor change in G4VDNAModel <<
183 <<
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) <<
185 - reorganize multiple material model of PTB mo <<
186 G4VDNAModel plays like a data layer for multip <<
187 The concrete models are independent of G4DNAMo <<
188 <<
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) <<
190 - replaced string to material index and clean <<
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, <<
192 G4DNAPTBExcitationStructure) - PTB models <<
193 - added material pointer members for each conc <<
194 - removed unused objects (G4DataVector()) <<
195 <<
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) <<
197 - clean G4DNAModelInterface file for the model <<
198 <<
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) <<
200 - fix coverity of G4DNARuddIonisationExtendedM <<
201 (Uninitialized scalar variable) from cand1 ana <<
202 <<
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 <<
204 - G4DNARuddIonisationExtendedModel - fixed com <<
205 radioactive decay module - before this upd <<
206 only 5 ions have data needed for this mode <<
207 model scaling relation to the carbon ion i <<
208 no data; low-energy limit is used now more <<
209 but not killed, because they may have radi <<
210 lines are removed from the class <<
211 <<
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) <<
213 - Fixed more compilation warnings for implicit <<
214 <<
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) <<
216 - delete unused tests in dna (G4DNAProcessTest <<
217 <<
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) <<
219 - Fixed compilation warnings for implicit type <<
220 <<
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 <<
222 - G4DNAUeharaScreenedRutherfordElasticModel - <<
223 low and high energy limit for the model; r <<
224 <<
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) <<
226 - Fix Coverity issues for ref-09 <<
227 <<
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) <<
229 - minor correction of IRT-syn model (chemistry <<
230 after 1 ps. <<
231 <<
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- <<
233 - Add nitrogen models from PTra code <<
234 <<
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) <<
236 - Fixed minor mistake of file name in G4DNARPW <<
237 - Added protection for HighEnergyLimit/LowEner <<
238 G4DNARPWBAExcitationModel <<
239 <<
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) <<
241 - Fixed compilation warnings on Intel/icx comp <<
242 but not used in G4ITNavigator2. <<
243 <<
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) <<
245 - Fix user's report for IRT model. <<
246 If the first IRTSampling won't give any rea <<
247 <<
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) <<
249 - Fix Coverity static analysis for ref-08 <<
250 uninit_member in G4DNAMillerGreenExcitationMo <<
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI <<
252 Use auto & instead of auto : G4ITFinder, G4DN <<
253 <<
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) <<
255 - Resolve dependency inconsistencies : <<
256 dna/management/include/G4ChemicalMoleculeF <<
257 dna/management/include/G4UserMeshAction.hh <<
258 dna/management/include/G4OctreeFinder.hh i <<
259 <<
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) <<
261 - Partially resolve dependency inconsistencies <<
262 - NB: cannot be resolved fully without intro <<
263 G4emdna-man, G4emdna-molman, G4emdna-utils <<
264 <<
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) <<
266 - Define G4CT_MAX_COUNT for changing "compile <<
267 errors on NVHPC compiler. <<
268 <<
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 <<
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo <<
271 cleanup according to the recent G4VEmProce <<
272 headers are moved to source; C++11 keyward <<
273 <<
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) <<
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela <<
276 G4DNACPA100IonisationModel.cc, G4DNAChampion <<
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo <<
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx <<
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis <<
280 G4DNASancheExcitationModel.cc : <<
281 use G4FindDataDir("G4LEDATA") to find datase <<
282 <<
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) <<
284 - correct DNA ion definitions in G4DNARuddIoni <<
285 <<
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) <<
287 - G4Octree : fixed Coverity warning. <<
288 <<
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) <<
290 - update data structure to improve performance <<
291 <<
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) <<
293 - G4ITTransportation: fixed misuse of bitwise <<
294 <<
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) <<
296 - Added missing headers. <<
297 <<
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) <<
299 - change the scavenging filter of the IRT beyo <<
300 <<
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) <<
302 - Add localthread for fUse of G4VMoleculeCount <<
303 <<
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa <<
305 - Incorporation of model based on RPWBA to tra <<
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI <<
307 <<
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) <<
309 - add UserBrownianAction in G4DNABrownianTrans <<
310 G4DNAMolecularDissociation <<
311 - replace G4int by int64_t for width integer t <<
312 - add fResetScavenger in G4SchedulerMessenger <<
313 <<
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) <<
315 - save local instances for recurrent access to <<
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo <<
317 G4DNARuddIonisationModel <<
318 - use G4Pow and G4Log instead of std::pow and <<
319 - inside G4DNARuddIonisationExtendedModel comm <<
320 inside G4DNAGenericIonsManager <<
321 <<
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) <<
323 - Debug the report #2235 which might be relate <<
324 - Clean code <<
325 - Delete G4ITFinder.cc <<
326 <<
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) <<
328 - save local instances for recurrent access to <<
329 G4DNADingfelderChargeDecreaseModel and G4DNADi <<
330 - use G4Pow and G4Log instead of std::pow and <<
331 <<
332 ## 2022-03-18 SI (emdna-V11-00-10) <<
333 - add protection in G4DNACPA100IonisationModel <<
334 <<
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) <<
336 - remove macro commands to control the chemist <<
337 (creating models in G4SchedulerMessenger can m <<
338 - add flag OctreeFinder in IRT_syn's Initializ <<
339 <<
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) <<
341 - add macro commands to control the chemistry <<
342 parameters including the chemical molecules an <<
343 <<
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) <<
345 - optimize IRT-syn model, use reaction radius <<
346 - delete G4VReactionType, G4DNAReactionTypeMan <<
347 G4DNAPartiallyDiffusionControlled <<
348 - delete G4DNAIRT_geomtries <<
349 <<
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) <<
351 - `G4ITTransportation`: Make `PrepareState` mo <<
352 - `G4DNAPolyNucleotideReactionProcess`: <<
353 - Move `PrepareState` and `State` macros int <<
354 - Make `PrepareState` more function-like, ex <<
355 - Move variable `pMoleculeA` under `G4VERBOS <<
356 <<
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) <<
358 - add the condition of water material for the <<
359 warning in G4DNAMolecularDissociation::DecayIt <<
360 <<
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) <<
362 - modify the macro in G4Molecule.cc and G4ITTy <<
363 <<
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) <<
365 - Prefer pointer to `const G4Material` if poss <<
366 <<
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) <<
368 - Remove useless `const_cast` of `G4VSensitive <<
369 <<
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) <<
371 - add G4DNAPolyNucleotideReactionProcess, G4VD <<
372 files for DNA damage applications <<
373 <<
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) <<
375 - Change to new Markdown History format <<
376 <<
377 --- <<
378 <<
379 # History entries prior to 11.0 <<
380 <<
381 8-11-2021, H. Tran, emdna-V10-07-15 <<
382 - corrected Circular dependencies for mesoscop <<
383 - corrected the problem in IRT <<
384 <<
385 4-11-2021, H. Tran, emdna-V10-07-14 <<
386 - define a G4FakeParticleID::fLastValue in the <<
387 delete G4FakeParticleID.cc, <<
388 solve arithmetic problems, <<
389 Added new mesoscopic model for dna chemistry <<
390 <<
391 21-10-2021, W.G.Shin, emdna-V10-07-13 <<
392 - Added a virtual classes for DNA geometry - G <<
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul <<
394 G4ITModelProcessor, G4Sch <<
395 G4DNAMolecularReactionTab <<
396 <<
397 23-09-2021, A. Ribon, emdna-V10-07-12 <<
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit <<
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh <<
400 G4DNAChargeIncrease, G4DNAElectronSolvation, <<
401 G4DNASecondOrderReaction, G4DNAElectronHoleR <<
402 G4DNABrownianTransportation : replaced hardw <<
403 with enum values introduced in the new class <<
404 <<
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 <<
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati <<
407 G4VLEPSModel - updated interfaces to G4Physi <<
408 <<
409 16-07-2021, D. Sakata, emdna-V10-07-10 <<
410 - Fixed initialization error in G4DNAELSEPAEla <<
411 <<
412 28-06-2021, G. Cosmo, emdna-V10-07-09 <<
413 - Fixed compilation error in G4ITMultiNavigato <<
414 enabled. <<
415 <<
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 <<
417 - Added new classes G4DNADiracRMatrixExcitatio <<
418 G4DNAQuinnPlasmonExcitatio <<
419 G4DNARelativisticIonisatio <<
420 G4DNAPlasmonExcitation <<
421 - Modified G4DNAELSEPAElasticModel for gold <<
422 <<
423 9-05-2021, H.Tran, tag emdna-V10-07-07 <<
424 - Add IRT-syn model <<
425 <<
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 <<
427 - Migrate build to modular CMake API <<
428 <<
429 27-04-2021, H.Tran, tag emdna-V10-07-05 <<
430 - G4DNAElectronHoleRecombination: added Octree <<
431 - G4DNABrownianTransportation: modified AlongS <<
432 - added OctreeFinder and IRTUtils <<
433 <<
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 <<
435 - G4DNABornAngle, G4DNARuddAngle - updated pri <<
436 <<
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 <<
438 - Move DNA-related Unit Tests from lowenergy/t <<
439 <<
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 <<
441 - Fixed dependency on g4tools, now moved to ex <<
442 <<
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 <<
444 - G4DNAElectronHoleRecombination <<
445 Dissociation channel of electron-hole recomb <<
446 G4EmDNAChemistry, _option1, _option2, _optio <<
447 - G4DNAWaterDissociationDisplacer <<
448 Added the fragment displacement for new diss <<
449 <<
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 <<
451 - Fix thread contention on mutable data in G4D <<
452 help resolving observed crashes in MT runs. <<
453 Some code cleanup. <<
454 <<
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 <<
456 - G4DNAMolecularMaterial - removed commented l <<
457 - History file fixed <<
458 <<
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 <<
460 - G4DNAMolecularMaterial - attempt to fix nigh <<
461 in chem6 example - do not delete instance of <<
462 <<
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 <<
464 - Added dependency on analysis/g4tools in GNUm <<
465 required after analysis update (analysis-V10 <<
466 <<
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 <<
468 - Fixed coverity warning <<
469 <<
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 <<
471 - Fixed coverity warnings <<
472 - Fix of IRT bug <<
473 (protection for the crash induced by empty re <<
474 <<
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 <<
476 - Add missing G4analysismng module dependency <<
477 <<
478 20-05-20: W.G.Shin emdna-V10-06-05 <<
479 - Revised displacement of OH radicals of B1A1 <<
480 based on momentum conservation in G4DNAWaterDi <<
481 - Added missing History <<
482 <<
483 26-04-20: W.G.Shin emdna-V10-06-04 <<
484 - Fixed coverity test <<
485 <<
486 15-04-20: G.Cosmo emdna-V10-06-03 <<
487 - G4MoleculeDefinition: copy constructor and a <<
488 are not allowed (as for G4ParticleDefinition <<
489 <<
490 19-02-20: W.G.Shin emdna-V10-06-02 <<
491 - Fixed memory issue on G4DNAMolecularReaction <<
492 - Revised headeres of IRT classes <<
493 <<
494 12-02-20: W.G.Shin emdna-V10-06-01 <<
495 - Added protections floating point exception i <<
496 <<
497 10-01-20: W.G.Shin emdna-V10-06-00 <<
498 - Added classes for IRT <<
499 - Added features in management classes for IRT <<
500 G4ITModelProcessor ...) <<
501 - Added features in G4DNAMolecularReactionTabl <<
502 - Added molecules of Plante et al. (2017) (Oxy <<
503 <<
504 15-11-19: G.Cosmo emdna-V10-05-11 <<
505 - Fixed cases of implicit type conversions fro <<
506 <<
507 8-11-19: HT, tag emdna-V10-05-10 <<
508 - Fixed the exception divide by zero of diffus <<
509 G4DNABrownianTransportation::AlongStepGetPhysi <<
510 for the case of static molecules (DNA) (diffus <<
511 <<
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 <<
513 - Enabled G4ItNavigator{1,2} to flag if it enc <<
514 of external physical volume (meant for adapt <<
515 <<
516 19-10-19: WGS, SI, tag emdna-V10-05-08 <<
517 - Added new model G4DNAELSEPAElasticModel <<
518 <<
519 11-10-19: WGS, SI, tag emdna-V10-05-07 <<
520 - G4DNAOneStepThermalizationModel.* : <<
521 added Kreipl and Meesungnoen amorphous ice mod <<
522 - G4DNAWaterDissociationDisplacer* : updated <<
523 <<
524 03-06-2019, MK, tag emdna-V10-05-06 <<
525 - Fix GCC9 warnings <<
526 <<
527 26-03-2019, HT, tag emdna-V10-05-05 <<
528 - Added G4DNAMolecule <<
529 <<
530 10-03-2019, MK, tag emdna-V10-05-04 <<
531 - Fix reaction site issue <<
532 - Chemistry: clarify pointer ownership, clean <<
533 <<
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 <<
535 - Fixed typos in printouts in G4MolecularConfi <<
536 G4VITRestProcess, G4DNAElectronHoleRecombina <<
537 <<
538 18-01-2019, HT, tag emdna-V10-05-02 <<
539 - Transformed the exception into warning in G4 <<
540 <<
541 28-12-2018, MK, tag emdna-V10-05-01 <<
542 DEV-300 : G4DNAChemistryManager clarify pointe <<
543 <<
544 05-01-2019, HT, tag emdna-V10-05-00 <<
545 - moved the checking position of track status <<
546 in G4ITStepProcessor::SetInitialStep() <<
547 <<
548 01-09-2018, SI, tag emdna-V10-04-10 <<
549 renamed tag <<
550 <<
551 01-09-2018, SI, tag emdna-v10-04-09 <<
552 - bugzilla 2084 <<
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id <<
554 <<
555 30-07-2018, SI, tag emdna-V10-04-08 <<
556 - included upper energy limit of models (2) <<
557 <<
558 29-07-2018, SI, tag emdna-V10-04-07 <<
559 - included upper energy limit of models <<
560 <<
561 01-07-2018, SI, tag emdna-V10-04-06 <<
562 - added protection in Auger emission <<
563 <<
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 <<
565 - updated Si mass in G4DNAGenericIonsManager <<
566 <<
567 22-06-2018, SI tag emdna-V10-04-04 <<
568 - fixed warnings in lepts models <<
569 <<
570 14-05-2018, SI tag emdna-V10-04-03 <<
571 - chemistry update by Mathieu <<
572 <<
573 01-05-2018, SI tag emdna-V10-04-02 <<
574 - chemistry update by Mathieu <<
575 <<
576 09-02-2018, M.Asai tag emdna-V10-04-01 <<
577 - G4DNAMolecularMaterial.cc : <<
578 GetDensityTableFor() and GetNumMolPerVolTabl <<
579 at G4State_Init rather than G4State_Idle. <<
580 - Co-works with run-V10-04-01 and global-V10-0 <<
581 <<
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 <<
583 - Fixed self-consistency in headers (missing # <<
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff <<
585 Fixed spurious definition of G4IT namespace <<
586 Thanks to Raphael Isemann for reporting thes <<
587 <<
588 01-11-2017, MK tag emdna-V10-03-30 <<
589 - remove models/test directory <<
590 <<
591 31-10-2017, JA ( tag missing ) <<
592 - G4KDNode.hh: Add missing included file - nee <<
593 <<
594 16-08-2017, SI tag emdna-V10-03-28 <<
595 - updated variable types in models <<
596 <<
597 10-08-2017, SI tag emdna-V10-03-27 <<
598 - test <<
599 <<
600 10-08-2017, SI tag emdna-V10-03-26 <<
601 - same as previous <<
602 <<
603 09-08-2017, SI tag emdna-V10-03-25 <<
604 - same as previous <<
605 <<
606 09-08-2017, SI tag emdna-V10-03-24 <<
607 - G4DNAEmfietzoglouIonisationModel: added prot <<
608 <<
609 03-08-2017, VI tag emdna-V10-03-23 <<
610 - G4DNAExcitation, G4DNAIonisation - make cohe <<
611 <<
612 28-07-2017, SI, tag emdna-V10-03-22 <<
613 - added stationary mode flag to CPA100 ionisat <<
614 <<
615 04-07-2017, SI, tag emdna-V10-03-21 <<
616 - added tagging of atom. deexc. products in io <<
617 <<
618 31-05-2017, SM, tag emdna-V10-03-20 <<
619 - Correct windows issues with path of diff. CS <<
620 <<
621 31-05-2017, SI, tag emdna-V10-03-19 <<
622 - roll-back (Windows issues with previous tag) <<
623 <<
624 24-05-2017, SI, tag emdna-V10-03-18 <<
625 - added tagging of atom. deexc. products in io <<
626 <<
627 11-05-2017, VI tag emdna-V10-03-17 <<
628 - fix for gcc 7.1 warnings in G4DNACrossSectio <<
629 <<
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 <<
631 - fix for gcc 7.1 warnings in G4DNACrossSectio <<
632 <<
633 03-05-2017, SM, tag emdna-V10-03-15 <<
634 - add the new G4DNADummyModel and allow the co <<
635 <<
636 27-04-2017, SM, tag emdna-V10-03-14 <<
637 - correct small typo mistakes. <<
638 <<
639 27-04-2017, SM, tag emdna-V10-03-13 <<
640 - update Models/G4DNAModelInterface to correct <<
641 <<
642 10-03-2017, MK, tag emdna-V10-03-12 <<
643 - update utils/GNUmakefile <<
644 <<
645 13-02-2017, MK, tag emdna-V10-03-11 <<
646 - G4DNAMolecularMaterial: update doxygen doc <<
647 <<
648 13-02-2017, MK, tag emdna-V10-03-10 <<
649 - G4DNAMolecularMaterial: <<
650 remove newly introduced methods, add fatal e <<
651 add doxygen documentation <<
652 <<
653 10-02-2017, MK, tag emdna-V10-03-09 <<
654 - Introducing G4PhysChemIO <<
655 - Move call to G4TrackList::Pop(track) from G4 <<
656 to G4ITTrackHolder. And make sure track stat <<
657 when G4ITTrackHolder::PushToKill is called. <<
658 <<
659 09-02-2017, MK, tag emdna-V10-03-08 <<
660 - G4KDNode.hh: remove unused G4ThreeVector hea <<
661 - G4KDMap.hh: int->size_t + indentation <<
662 - G4KDMap.cc: int->size_t <<
663 - G4IT & G4Molecule: template specialization <<
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K <<
665 <<
666 24-01-2017, SM, tag emdna-V10-03-07 <<
667 - add a ifdef to remove a warning (windows onl <<
668 <<
669 23-01-2017, SM, tag emdna-V10-03-06 <<
670 - add missing G4DNAModelInterface files (.hh a <<
671 <<
672 23-01-2017, SM CV, tag emdna-V10-03-05 <<
673 - add new G4DNAPTB* classes and the structure <<
674 <<
675 14-01-2017, MK, tag emdna-V10-02-37 <<
676 - Prevent a crash when calling G4ITTrackingMan <<
677 the UserTimeStepAction::PostTimeStepAction <<
678 - Add missing: G4ITTrackingManager* G4Schedule <<
679 <<
680 28-12-2016, SI, tag emdna-V10-03-04 <<
681 - extended upper energy limit of protons for <<
682 G4DNARuddIonisationExtendedModel <<
683 <<
684 27-12-2016, SI, tag emdna-V10-03-03 <<
685 - updated references of CPA100 classes <<
686 <<
687 23-12-2016, SI, tag emdna-V10-03-02 <<
688 - updated sources.cmake <<
689 <<
690 23-12-2016, SI, tag emdna-V10-03-01 <<
691 - commit of first CPA100 classes, part 2 <<
692 <<
693 21-12-2016, SI, tag emdna-V10-03-00 <<
694 - commit of first CPA100 classes <<
695 16
696 27-11-2016, MK, tag emdna-V10-02-36 17 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 18 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 19 - G4DNADamages -> G4DNADamage
699 20
700 17-11-2016, MK, tag emdna-V10-02-35 21 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 22 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 23
703 16-11-2016, MK, tag emdna-V10-02-34 24 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat << 25 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 26 displacement types can be thread shared
706 - G4TrackState: Move implementation of static << 27 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 28 G4VTrackStateID::Create() to cc file - windows crash
708 29
709 15-11-2016, MK, tag emdna-V10-02-33 30 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 31 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 32
712 14-11-2016, MK, tag emdna-V10-02-32 33 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t << 34 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 35 windows platforms
715 36
716 14-11-2016, MK, tag emdna-V10-02-31 37 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: << 38 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 39 tag init constexpr factor with number rather than expression
719 40
720 14-11-2016, MK, tag emdna-V10-02-30 41 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 42 - Use CLHEP::pi instead of M_PI
722 43
723 14-11-2016, MK, tag emdna-V10-02-29 44 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 45 - Correct bracket enclosing
725 46
726 14-11-2016, MK, tag emdna-V10-02-28 47 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 48 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 49 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 50 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 51 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 52 - Adds and use G4CTCounter
732 53
733 02-11-2016, MK, tag emdna-V10-02-27 54 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom << 55 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 56 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo << 57 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety << 58 computeStep & computeSafety
738 59
739 07-08-2016, SI, tag emdna-V10-02-26 60 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 61 - added stationnary mode to sub-excitation electron processes
741 62
742 23-06-2016, MK 63 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 64 - G4Scheduler: move G4IosFlagsSaver to Process()
744 65
745 3-06-2016, MK, tag emdna-V10-02-25 66 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 67 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 68 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 69 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 70
750 3-06-2016, MK, tag emdna-V10-02-24 71 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 72 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 73 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 74 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 75 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 76 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 77 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc << 78 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 79 model used for another part than e-
759 80
760 1-06-2016, MK, tag emdna-V10-02-23 81 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 82 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 83 logic for interface with physics models
763 84
764 31-05-2016, MK, tag emdna-V10-02-22 85 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 86 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 87
767 28-05-2016, MK, tag emdna-V10-02-21 88 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 89 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 90 one of the previous tags
770 91
771 19-05-2016, MK, tag emdna-V10-02-20 92 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 93 - G4ITNavigator: remove warnings on gcc6.1
773 94
774 17-05-2016, MK, tag emdna-V10-02-19 95 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 96 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 97 correct model and process names for solvation
777 98
778 12-05-2016, MK, tag emdna-V10-02-18 99 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: << 100 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 101 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne << 102 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 103 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 104 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 105 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 106 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 107 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim << 108 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 109 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 110 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 111 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 112 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 113 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 114 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 115 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 116 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 117 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 118 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 119 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 120 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 121 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 122 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 123 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv << 124 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 125 created; otherwise, the primary electron is killed
805 126
806 30-04-2016, MK, tag emdna-V10-02-17 127 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 128 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 129
809 30-04-2016, MK, tag emdna-V10-02-16 130 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 131 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p << 132 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 133 unregistered molecule definition
813 134
814 22-04-2016, MK, tag emdna-V10-02-15 135 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 136 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 137 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 138
818 22-04-2016, MK, tag emdna-V10-02-14 139 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit << 140 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 141 remove usage of internal energy boundaries
821 142
822 19-03-2016, SI, tag emdna-V10-02-13 143 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 144 - added nrj extensibility to SR and USR models
824 145
825 11-03-2016, SI, tag emdna-V10-02-12 146 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 147 -roll back to files in emdna-V10-02-06
827 148
828 10-03-2016, SI, tag emdna-V10-02-11 149 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 150 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 151 and G4DNAScreenedRutherfordElasticModel
831 152
832 10-03-2016, SI, tag emdna-V10-02-10 153 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 154 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 155
835 07-03-2016, SI, tag emdna-V10-02-09 156 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 157 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 158 of G4DNAUeharaScreenedRutherfordElasticModel
838 159
839 06-03-2016, SI, tag emdna-V10-02-08 160 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 161 -removed useless G4Pow declaration
841 162
842 04-03-2016, SI, tag emdna-V10-02-07 163 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 164 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 165 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 166
846 02-03-2016, SI, tag emdna-V10-02-06 167 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 168 -replaced std::exp by G4Exp
848 169
849 02-03-2016, SI, tag emdna-V10-02-05 170 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 171 -replaced std::exp by G4Exp
851 172
852 02-03-2016, SI, tag emdna-V10-02-04 173 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 174 -replaced std::exp by G4Exp
854 175
855 01-03-2016, SI, tag emdna-V10-02-03 176 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 177 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 178 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 179 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 180 by S. Okada (KEK, JP)
860 181
861 17-02-2016, MK, tag emdna-V10-02-02 182 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 183 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 184
864 16-12-2015, SI, tag emdna-V10-02-01 185 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: << 186 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 187 added protection on energy for interpolation method change
867 188
868 16-12-2015, SI, tag emdna-V10-02-00 189 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add << 190 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 191 energy
871 192
872 13-11-2015, MK, tag emdna-V10-01-55 193 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 194 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 195 file
875 196
876 10-11-2015, MK, tag emdna-V10-01-54 197 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 198 * remove unused variables
878 199
879 10-11-2015, MK, tag emdna-V10-01-53 200 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 201 * Coverity fixes
881 202
882 06-11-2015, MK, tag emdna-V10-01-52 203 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 204 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 205
885 06-11-2015, MK, tag emdna-V10-01-51 206 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 207 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 208 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 209
889 06-11-2015, MK, tag emdna-V10-01-50 210 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 211 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 212 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 213 * Add G4ITStepProcessorState_Lock.hh
893 214
894 06-11-2015, MK, tag emdna-V10-01-49 215 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 216 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 217 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 218 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 219 but in the source file - causing crashes on windows
899 220
900 04-11-2015, MK, tag emdna-V10-01-48 221 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 222 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 223 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 224 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 225 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 226 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 227 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 228 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 229 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 230 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using << 231 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 232 all dissociation products have been defined (they will just not be taken
912 into account) 233 into account)
913 * G4DNAMolecularReactionTable: delete reaction 234 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 235
915 03-11-2015, MK, tag emdna-V10-01-47 236 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 237 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac << 238 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 239 the call
919 240
920 03-11-2015, MK, tag emdna-V10-01-46 241 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 242 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 243 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 244 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 245 (causing navigator complains)
925 << 246
926 03-11-2015, MK, tag emdna-V10-01-45 247 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 248 * G4Serialize: Add definition in header for G4String
928 249
929 02-11-2015, MK, tag emdna-V10-01-44 250 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 251 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 252 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 253 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 254 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon << 255 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 256 -> G4MolecularConfMan is taking care of this
936 << 257
937 30-10-2015, MK, tag emdna-V10-01-43 258 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter << 259 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 260 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 261 * Unit tests corrected
941 * G4VITDiscreteProcess added 262 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 263 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 264 * Intermediate update for 10.2 release
944 << 265
945 27-10-2015, MK, tag emdna-V10-01-42 266 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 267 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 << 268
948 26-10-2015, MK, tag emdna-V10-01-41 269 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 270 * Sanche model: try to solve std::vector out of bounds
950 271
951 23-10-2015, MK, tag emdna-V10-01-40 272 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 273 * remove all CLHEP::shared_ptr usage
953 << 274
954 23-10-2015, CV, SM, tag emdna-V10-01-39 275 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel << 276 * Addded base class G4VDNAPTBModel
956 277
957 28-09-2015, SI, tag emdna-V10-01-38 278 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 279 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 280
960 19-09-2015, MK, tag emdna-V10-01-37 281 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 282 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 283 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 284
964 17-09-2015, MK, tag emdna-V10-01-36 285 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 286 * G4MoleculeGun: Remove compilation warnings
966 287
967 04-09-2015 MK, tag emdna-V10-01-35 288 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 289 * Fix G4MoleculeGun compilation errors
969 290
970 03-09-2015 SI, tag emdna-V10-01-34 291 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 292 * Added stationary regime to all inelastic models
972 293
973 19-08-2015, MK 294 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 295 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 296 - compatible with both Smoluchowski & Gillespie models
976 297
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 298 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 299 * Added easier handling of cumulative proba. in SR elastic models
979 300
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 301 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 302 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 303 declaration of G4MoleculeShoot.
983 304
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 305 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 306 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 307 declaration of G4MoleculeShootMessenger.
987 308
988 12-08-2015, MK, tag emdna-V10-01-29 309 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 310 * Add G4Serialize in the build tree temporarily
990 311
991 12-08-2015, MK, tag emdna-V10-01-28 312 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 313 * G4Serialize added
993 314
994 12-08-2015, MK 315 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 316 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 317
997 24-07-2015, MK 318 24-07-2015, MK
998 - G4MolecularReactionTable 319 - G4MolecularReactionTable
999 * Add get methods 320 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 321 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 322 * Molecule gun : place randomly in a box
1002 323
1003 15-07-2015, MK 324 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA << 325 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 326 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 327 * processes & models initialisation again
1007 328
1008 15-07-2015, MK, tag emdna-V10-01-26 329 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 330 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 331 * add macro to prevent warnings in non-verbose mode
1011 332
1012 11-07-2015, MK, tag emdna-V10-01-25 333 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 334 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 335 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 336
1016 10-07-2015, MK, tag emdna-V10-01-24 337 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 338 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 339 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 340 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 341 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 342
1022 08-07-2015, MK, tag emdna-V10-01-23 343 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 344 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 345 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 346 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose << 347 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 << 348 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 349 - G4MoleculeDefinition:
1029 ::SetFormatedName added 350 ::SetFormatedName added
1030 ::NewConfiguration methods added 351 ::NewConfiguration methods added
1031 ::NewConfiguration added 352 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 353 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 354 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 355 ::Finalize added
1035 - G4MolecularConfiguration: << 356 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 357 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 358 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 359 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec << 360 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula << 361 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 362 than molecule models
1042 - G4Molecule add constructor where only G4Mol 363 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 364 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 365 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 366 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 367 - G4DNAElectronHoleRecombination added
1047 368
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 369 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c << 370 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 371 fasterCode usage on shell selection.
1051 372
1052 26-06-2015, MK 373 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to << 374 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 375 warning message description
1055 376
1056 16-06-205, MK 377 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 378 - Add G4Scheduler::GetGun()
1058 379
1059 16-06-2015, MK, tag emdna-V10-01-21 380 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 381 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 382 - G4DNAIonElasticModel: clean and fix double free
1062 383
1063 12-06-2015, MK, tag emdna-V10-01-20 384 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 385 - remove virtual keyword from G4IT::GetPosition()
1065 386
1066 04-06-2015, MK 387 04-06-2015, MK
1067 - just cosmetics 388 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 389 - remove virtual keyword from G4IT::operator[]
1069 390
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 391 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 392 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 393 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 394 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 395 - Fully qualify std::string elsewhere as needed to adjust
1075 396
1076 22-05-2015, John Allison, tag emdna-V10-01-18 397 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 398 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 399 "G4Threading::IsMasterThread()".
1079 400
1080 17-05-2015, MK, tag emdna-V10-01-17 401 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 402 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 403 - Correct sources.cmake
1083 - Born headears: includes both model versions << 404 - Born headears: includes both model versions when proxy header is included
1084 405
1085 16-05-2015, MK, tag emdna-V10-01-16 406 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 407 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 408 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 409 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 410 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 411 - Add G4DNABornExcitationModel2 (temporary)
1091 412
1092 15-05-2015, MK, tag emdna-V10-01-15 413 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 414 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 415
1095 14-05-2015, MK, tag emdna-V10-01-14 416 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 417 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 418
1098 14-05-2015, MK, tag emdna-V10-01-13 419 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 420 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 421 - G4ITReaction: try to solve compilation error
1101 422
1102 12-05-2015, MK, tag emdna-V10-01-12 423 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 424 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 425
1105 12-05-2015, MK, tag emdna-V10-01-11 426 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 427 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 428
1108 11-05-2015, MK, tag emdna-V10-01-10 429 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 430 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 431 +Add GetPartialCrossSection
1111 +Code cleaning 432 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 433 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 434 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 435 - G4DNAChemistryManager::GetValue(...) added
1115 436
1116 02-05-2015, MK 437 02-05-2015, MK
1117 - Update G4TrackState & related classes 438 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: << 439 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian << 440 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 441 +comment useless method
1121 - G4Scheduler: << 442 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS << 443 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime << 444 +remove fTmpEndTime
1124 +Add CanICarryOn 445 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 446 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 447
1127 18-03-2015, MK, tag emdna-V10-01-08 448 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 449 - Same as before, just add the missing History file
1129 450
1130 18-03-2015, MK, tag emdna-V10-01-07 451 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 452 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 453 instead of a reference
1133 454
1134 12-02-2015, MK, tag emdna-V10-01-06 455 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 456 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 457 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi << 458 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 459
1139 11-02-2015, MK, tag emdna-V10-01-05 460 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 461 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 462 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 463 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 464
1144 16-01-2015, SI, tag emdna-V10-01-04 465 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 466 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 467
1147 14-12-2014, MK, tag emdna-V10-01-03 468 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 469 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval << 470 - ScreenRutherfordElastic: correct retrieval of water density
1150 471
1151 13-12-2014, SI, tag emdna-V10-01-02 472 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 473 - Added elastic model by H. Tran.
1153 474
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 475 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 476 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 477 to allow for compilation on Linux/clang-3.5.
1157 478
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 479 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 480 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 481 include missing files:
1161 G4ITTransportationManager.icc 482 G4ITTransportationManager.icc
1162 G4KDNode.icc 483 G4KDNode.icc
1163 G4KDTree.icc 484 G4KDTree.icc
1164 G4MoleculeFinder.hh 485 G4MoleculeFinder.hh
1165 486
1166 01-12-2014, MK, tag emdna-V10-00-63 487 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 488 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 489 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 490 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 491 when the particle has reached a boundary
1171 492
1172 28-11-2014, MK, tag emdna-V10-00-62 493 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 494 - Retag
1174 495
1175 28-11-2014, MK, tag emdna-V10-00-61 496 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 497 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 498 - Fix Brownian navigation
1178 - Some fixes related to scheduler 499 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 500 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 501 - Enhance comments
1181 502
1182 24-11-2014, MK, tag emdna-V10-00-60 503 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 504 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 505
1185 24-11-2014, MK, tag emdna-V10-00-59 506 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 507 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 508 - Remove useless verbose
1188 - Try to compile on all platforms 509 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 510 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 511 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 512 Just registering constructor is enough to initialized the chemistry
1192 513
1193 24-11-2014, MK, tag emdna-V10-00-58 514 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 515 - G4FastList: remove all friend declarations
1195 516
1196 22-11-2014, MK, tag emdna-V10-00-57 517 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 518 - Another attempt to compile G4FastList on all platforms
1198 519
1199 22-11-2014, MK, tag emdna-V10-00-56 520 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 521 - Attempt to compile G4FastList on all platforms
1201 522
1202 21-11-2014, MK, tag emdna-V10-00-55 523 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 524 - Attempt to compile G4FastList with clang
1204 525
1205 21-11-2014, MK, tag emdna-V10-00-54 526 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 527 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou << 528 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 529 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 530 - Update G4ITNavigator2 to the G4Navigator of John
1210 531
1211 21-11-2014, MK, tag emdna-V10-00-53 532 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b << 533 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 534 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 535 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time << 536 is false by default --> uses the random time computation for crossing
1216 boundaries 537 boundaries
1217 538
1218 20-11-2014, SI, tag emdna-V10-00-52 539 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 540 - Improved error message for missing data in PW elastic model
1220 541
1221 08-11-2014, MK, tag emdna-V10-00-51 542 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 543 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 544 when the asked item is not found
1224 545
1225 03-11-2014 MK, tag emdna-V10-00-50 546 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 547 - correct track creation by G4MoleculeGunMessenger
1227 548
1228 03-11-2014 MK, tag emdna-V10-00-49 549 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 550 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 551 - Correct a bug in G4MoleculeGun
1231 552
1232 28-10-2014 PA, tag emdna-V10-00-48 553 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 554 - correct compilation warnings
1234 555
1235 28-10-2014 PA, tag emdna-V10-00-47 556 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 557 - correct compilation warnings
1237 558
1238 28-10-2014 PA, tag emdna-V10-00-46 559 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 560 - correction in sources.cmake
1240 561
1241 28-10-2014 PA, tag emdna-V10-00-45 562 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 563 - retag to add LEPTS
1243 564
1244 28-10-2014 PA, tag emdna-V10-00-44 565 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 566 - add LEPTS
1246 567
1247 25-10-2014 MK, tag emdna-V10-00-43 568 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 569 - remove useless G4VITScheduler
1249 570
1250 25-10-2014 MK, tag emdna-V10-00-42 571 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 572 - correct warnings
1252 573
1253 24-10-2014 MK, tag emdna-V10-00-41 574 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 575 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 576 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 577 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 578 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 579 - G4ITFinder added
1259 - G4VITTrackHolder added 580 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 581 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 582 - code cleaned + useless classes removed
1262 583
1263 24-10-2014 MK, tag emdna-V10-00-40 584 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 585 - G4ITStepManager: remove verbose at closure time
1265 586
1266 21-10-2014 MK, tag emdna-V10-00-39 587 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 588 - try to solve crash at closure time
1268 589
1269 21-10-2014 MK, tag emdna-V10-00-38 590 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 591 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 592 table when deleted
1272 - update disclaimer 593 - update disclaimer
1273 594
1274 17-10-2014 MK, tag emdna-V10-00-37 595 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 596 - clean code
1276 - G4ITStepManager: one can ask why simulation 597 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 598 - remove useless verbose
1278 599
1279 17-10-2014 MK, tag emdna-V10-00-36 600 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 601 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 602 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 603 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 604
1284 10-10-2014 MK, tag emdna-V10-00-35 605 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 606 Avoid use of std::map at the application level in TimeStepAction
1286 607
1287 07-10-2014 MK, tag emdna-V10-00-34 608 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 609 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 610 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 611 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 612
1292 07-10-2014 MK, tag emdna-V10-00-33 613 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 614 Initialize G4ITStepManager in G4DNAChemistryManager
1294 615
1295 17-09-2014 MK, tag emdna-V10-00-32 616 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 617 Add G4ITStepManager + messenger
1297 Tag before architecture change 618 Tag before architecture change
1298 619
1299 12-07-2014 SI, tag emdna-V10-00-31 620 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 621 Removed obsolete class for electron excitation
1301 622
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 623 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 624 - Get rid of obsolete 'register' keyword in code.
1304 625
1305 05-06-2014 SI, tag emdna-V10-00-29 626 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 627 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D << 628 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 629 G4GenericIon usage
1309 - requires G4EMLOW6.39 630 - requires G4EMLOW6.39
1310 631
1311 04-06-2014 MK, tag emdna-V10-00-28 632 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 633 Remove directory management/include/impl
1313 Prepare for release 634 Prepare for release
1314 635
1315 04-06-2014 MK, tag emdna-V10-00-27 636 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 637 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 638 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 639 Avoid usage of molecule iterators as pointers
1319 640
1320 03-06-2014 SI, tag emdna-V10-00-26 641 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 642 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 643
1323 28-05-2014 VI, SI tag emdna-V10-00-25 644 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 645 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 646 Ionisation models switch to use angular generator
1326 interface 647 interface
1327 648
1328 12.05.2014 MK, tag emdna-V10-00-24 649 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 650 Try to remove warnings 4
1330 651
1331 12.05.2014 MK, tag emdna-V10-00-23 652 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 653 Try to remove warnings 3
1333 654
1334 12.05.2014 MK, tag emdna-V10-00-22 655 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 656 Try to remove warnings 2
1336 657
1337 12.05.2014 MK, tag emdna-V10-00-21 658 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 659 Try to remove warnings
1339 660
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 661 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx << 662 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 663 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 664 G4EMLOW6.38 needed
1344 665
1345 07-04-2014 SI tag emdna-V10-00-19 666 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 667 Changed faster method interpolation in
1347 G4DNABornIonisationModel << 668 G4DNABornIonisationModel
1348 669
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 670 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 671 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 672 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 673 Corrected order of inclusion of some headers and use of <>/"".
1353 674
1354 04-04-2014 MK tag emdna-V10-00-17 675 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 676 Try to solve warnings when G4VERBOSE is off
1356 677
1357 02-04-2014 MK tag emdna-V10 678 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 679 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 680
1360 02-04-2014 MK tag emdna-V10 681 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 682 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 683
1363 02-04-2014 MK tag emdna-V10 684 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 685 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 686 -> this part is withdrawn for now
1366 687
1367 02-04-2014 MK tag emdna-V10 688 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 689 - version 2 : try fixing the build error on mac
1369 690
1370 02-04-2014 MK tag emdna-V10 691 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 692 - version 1 : try to fix build errors and warnings on mac
1372 693
1373 02-04-2014 MK tag emdna-V10 694 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 695 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 696 (G4MemStat & G4MolecularConfiguration)
1376 697
1377 02-04-2014 MK tag emdna-V10 698 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 699 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 700 (problem coming from having as a friend class a template argument)
1380 701
1381 02-04-2014 MK tag emdna-V10 702 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla << 703 - try to fix build error on windows platform
1383 704
1384 01-04-2014 MK tag emdna-V10 705 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 706 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 707 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 708
1388 01-04-2014 MK tag emdna-V10 709 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 710 - reset CMakeLists.txt
1390 711
1391 01-04-2014 MK tag emdna-V10 712 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 713 - update chemistry
1393 714
1394 01-04-2014 SI tag emdna-V10-00-05 715 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 716 - Modified calculation of secondary kinetic for fast code
1396 717
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 718 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 719 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 720 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 721 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 722
1402 25-03-2014 VS, SI tag emdna-V10-00-03 723 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 724 - Added several clear() to vectors for MT
1404 725
1405 17-03-2014 SI tag emdna-V10-00-02 726 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc << 727 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 728 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 729 to be used with G4EMLOW6.36
1409 730
1410 12-12-2013 M.K tag emdna-V10-00-01 731 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 732 - G4DNAMolecularMaterial: Remove unused variable
1412 733
1413 12-12-2013 M.K tag emdna-V10-00-00 734 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to << 735 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 736 a model is not created at initialisation time
1416 737
1417 21-11-2013 V.I. tag emdna-V09-06-22 738 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 739 - G4ITStepProcessor2 - removed obsolete unused header
1419 740
1420 01-11-2013 M.K tag emdna-V09-06-21 741 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 742 - Correct incorrect singleton check introduced in previous tag
1422 743
1423 01-11-2013 M.K tag emdna-V09-06-20 744 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 745 - Prepare for release bis
1425 746
1426 01-11-2013 M.K tag emdna-V09-06-19 747 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 748 - Prepare for release
1428 749
1429 10-10-2013 M.K. tag emdna-V09-06-18 750 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 751 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 752
1432 06-10-2013 M.K. tag emdna-V09-06-17 753 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 754 - Same as before once again
1434 755
1435 03-10-2013 M.K. tag emdna-V09-06-16 756 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 757 - Same as before
1437 758
1438 03-10-2013 M.K. tag emdna-V09-06-15 759 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 760 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t << 761 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 762 by the user - stage 1
1442 763
1443 14-09-2013 M.Asai tag emdna-V09-06-14 764 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 765 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 766 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 767 with virtual keyword in G4VITProcess.
1447 768
1448 12-09-2013 M.K. tag emdna-V09-06-13 769 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 770 Correction of an inadvertent modification introduced in previous tag
1450 771
1451 12-09-2013 M.K. tag emdna-V09-06-12 772 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 773 Correct bound checks in G4ITManager.icc
1453 774
1454 16-08-2013 S.I. tag emdna-V09-06-11 775 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 776 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 777
1457 16-08-2013 S.I. tag emdna-V09-06-10 778 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 779 Added G4DNAIons
1459 780
1460 25-06-2013 M.K. tag emdna-V09-06-09 781 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 782 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet << 783 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 784 auto_ptr according to c++ std version
1464 785
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 786 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 787 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 788 for problem accidentally introduced in previous tag.
1468 789
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 790 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 791 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 792 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 793 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 794 compilation on Windows.
1474 795
1475 06-06-2013 S.I. tag emdna-V09-06- 796 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 797 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 798 Requires G4EMLOW version 6.33
1478 799
1479 25-05-2013 M.K. tag emdna-V09-06- 800 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 801 *Fix warning compilation in G4KDMap for specific gcc version
1481 802
1482 24-05-2013 M.K. tag emdna-V09-06- 803 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi << 804 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 805 but still not in usage
1485 806
1486 23-05-2013 M.K. tag emdna-V09-06- 807 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 808 * G4KDMap : try fix error on std:ceil call on windows
1488 809
1489 23-V09-06-03-05-2013 M.K. tag emd 810 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 811 * G4KDMap : used deque::iterator
1491 812
1492 813
1493 22-05-2013 M.K. tag emdna-V09-06- 814 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 815 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 816 * G4KDMap : pop out elements from map
1496 817
1497 22-05-2013 M.K. tag emdna-V09-06-00 818 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global << 819 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager << 820 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 821 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 822 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 823 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 824 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali << 825 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes << 826 intialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI << 827 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 828
1508 12-11-2012 M.K tag emdna-V09-05- 829 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 830 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 831 coverity warnings (rev 64993)
1511 832
1512 06-11-2012 G.Cosmo tag emdna-V09 833 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 834 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 835 for objects in maps...
1515 836
1516 04-11-2012 M.K. tag emdna-V09-05-33 837 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 838 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 839 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 840 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 841 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 842 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 843 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 844 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 845 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 846 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 847 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 848 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 849 add "else" before "if" statements and
1529 add variables to avoid ma 850 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 851 dna.files : update files (rev 64725)
1531 852
1532 03-11-2012 S.I. tag emdna-V09-05-32 853 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 854 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 855 classes
1535 856
1536 24-10-2012 M.K tag emdna-V09 857 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 858 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 859 (previously commented)
1539 860
1540 23-10-2012 M.K tag emdna-V09 861 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 862 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 863 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 864
1544 18-10-2012 M.K tag emdna-V09 865 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 866 Previous tag did not include history changes
1546 867
1547 18-10-2012 M.K tag emdna-V09 868 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 869 Remove warning
1549 870
1550 17-10-2012 M.K tag emdna-V09 871 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 872 Correct a typo from previous tag
1552 873
1553 17-10-2012 M.K tag emdna-V09 874 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 875 Correct information in headers
1555 Rename G4DNADiffustionControlledM 876 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 877 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 878
1558 01-10-2012 SI, P.Pater tag emdna-V09 879 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 880 Force kinetic energy to zero for real killings in models.
1560 881
1561 12-07-2012 G.Cosmo tag emdna-V09 882 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 883 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 884 constants, in plan to remove implicit inclusion from globals.hh.
1564 885
1565 11.07.2012 M.K tag emdna-V09 886 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 887 Correct warnings introduce in previous tag
1567 888
1568 11.07.2012 M.K tag emdna-V09 889 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 890 Tag to be proposed
1570 891
1571 25.06.2012 M.K tag emdna-V09-05-21 892 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 893 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 894 Modify molecule's name
1574 << 895
1575 21.06.2012 S.I tag emdna-V09-05-20 896 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte << 897 Update of electron elastic scattering low limit
1577 898
1578 09.06.2012 M.K tag emdna-V09-05-19 899 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 900 Fixed shadowing
1580 901
1581 04.06.2012 M.K tag emdna-V09-05-18 902 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 903 Add G4ITTrackingInteractivity + correct coverity warnings
1583 904
1584 24.05.2012 M.K tag emdna-V09-05-17 905 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 906 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 907
1587 23.05.2012 M.K tag emdna-V09-05-16 908 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 909 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 910 G4ITStepManager
1590 Prevent call of destructor of G4I 911 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 912 G4DNAChemistryManager
1592 913
1593 23.05.2012 M.K tag emdna-V09-05-15 914 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 915 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 916 when one of its methods is called using a material that is
1596 not defined as a molecule 917 not defined as a molecule
1597 918
1598 21.05.2012 M.K tag emdna-V09-05-14 919 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 920 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 921 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 922 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 923 Modify all models to use G4DNAMolecularMaterial
1603 924
1604 14.05.2012 M.K tag emdna-V09-05-13 925 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 926 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 927 Add G4DNADamages
1607 928
1608 10.05.2012 M.K tag emdna-V09-05-12 929 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 930 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 931 from UserReactionAction::EndProcessing()
1611 932
1612 08.05.2012 M.K tag emdna-V09-05-11 933 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 934 Use inverseErf from CLHEP
1614 935
1615 03.05.2012 M.K tag emdna-V09-05-10 936 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 937 Add erfc function for windows compilator (VC++)
1617 938
1618 03.05.2012 M.K tag emdna-V09-05-09 939 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 940 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 941
1621 03.05.2012 M.K tag emdna-V09-05-08 942 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 943 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 944 Add new methods in G4ChemistryManager :
1624 - PushMolecule 945 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 946 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 947 Reset() at the end of G4ITStepManager::Process()
1627 948
1628 30.03.2012 M.K tag emdna-V09-05-07 949 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 950 Same as emdna-V09-05-06
1630 951
1631 30.03.2012 M.K tag emdna-V09-05-06 952 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 953 1) Add separate navigator for synchronous tracking
1633 New classes : 954 New classes :
1634 * G4ITTransportationManager 955 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 956 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 957 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 958 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 959 3) Solve bugs with normal and brownian ITTransportation
1639 960
1640 14.03.2012 M.K tag emdna-V09-05-05 961 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 962 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 963 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 964 -> become size_t + related changes
1644 * when a poststep process propo 965 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 966 => considered as a time, and transportation::computestep
1646 is used 967 is used
1647 968
1648 14.03.2012 M.K tag emdna-V09-05-04 969 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 970 Fix compilation warning
1650 971
1651 14.03.2012 M.K tag emdna-V09-05-03 972 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 973 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 974 Fix coverity warnings
1654 975
1655 18.01.2012 S.I. tag emdna-V09 976 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 977 Removal of G4Water* classes in utils
1657 978
1658 11.01.2012 M.K tag emdna-V09 979 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 980 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 981 concerning the final position of the solvated electron
1661 using Sanche thermalization 982 using Sanche thermalization
1662 983
1663 16.12.2011 S.I tag emdna-V09 984 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 985 Updated source of cross section file for elastic scattering
1665 986
1666 25.11.2011 M.K tag emdna-V09 987 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 988 Correct a typo in previous tag
1668 989
1669 25.11.2011 M.K tag emdna-V09 990 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 991 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 992 rather than center of mass in DNAMolecularReaction
1672 993
1673 21.11.2011 M.K tag emdna-V09 994 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 995 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 996 avoid conflicts with ROOT.
1676 Add short class description (comm 997 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 998 in JavaDoc style for doxygen use.
1678 999
1679 21.11.2011 M.K tag emdna-V09 1000 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1001 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1002 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1003 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1004 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1005 when the time steps returned by the time stepper
1685 and the processes are equal 1006 and the processes are equal
1686 Improve verbose 1007 Improve verbose
1687 1008
1688 21.11.2011 M.K tag emdna-V09 1009 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1010 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1011 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1012 Correct verbose in new models & process
1692 1013
1693 18.11.2011 M.K tag emdna-V09 1014 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl << 1015 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1016 in G4DNAChemistryManager
1696 1017
1697 18.11.2011 M.K tag emdna-V09 1018 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1019 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1020 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1021 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1022
1702 15.11.2011 G.Cosmo tag emdna-V09 1023 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1024 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1025 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1026 Windows.
1706 Fixed compilation warning on icc 1027 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1028 G4MolecularDecayTable.cc
1708 1029
1709 10.11.2011 M.K. tag emdna-V09 1030 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1031 Fix a bug in G4DNATransformElectronModel
1711 1032
1712 10.11.2011 M.K. tag emdna-V09 1033 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1034 Clean classes for release
1714 Add comment into source 1035 Add comment into source
1715 Change name of some methods 1036 Change name of some methods
1716 Transform two independent singlet 1037 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1038 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1039 (ITStepMan + DNAChemMan)
1719 1040
1720 10.11.2011 M.K. tag emdna-V09 1041 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1042 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1043 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1044 the chemistryManager.
1724 1045
1725 09.11.2011 M.K. tag emdna-V09 1046 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1047 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1048 in G4TrackListNode.
1728 Simplify and improve the use of d 1049 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1050 Add more convenient methods in userReactionAction
1730 1051
1731 08.11.2011 M.K. tag emdna-V09 1052 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1053 Fix coverity warnings
1733 1054
1734 07.11.2011 M.K. tag emdna-V09 1055 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1056 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1057 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1058 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1059 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1060 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1061 Clean classes for release
1741 1062
1742 03.11.2011 M.K. tag emdna-V09 1063 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1064 Add dna libs in sources.cmake
1744 1065
1745 03.11.2011 M.K. tag emdna-V09 1066 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1067 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1068 Add dna includes in sources.cmake
1748 << 1069
1749 01.11.2011 M.K. tag emdna-V09 1070 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1071 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1072 G4ITTransportation, G4TrackList on Windows
1752 1073
1753 01.11.2011 G.Cosmo 1074 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1075 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1076 updated GNUMakefiles to have it properly defined.
1756 1077
1757 31.10.2011 M.K tag emdna-V09-04-35 1078 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1079 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1080 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives << 1081 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1082 Fix windows compilation errors & warnings
1762 1083
1763 28.10.2011 M.K tag emdna-V09-04-34 1084 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1085 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1086 Plus remove obsolete G4Exception
1766 1087
1767 28.10.2011 M.K tag emdna-V09-04-33 1088 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1089 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1090 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1091 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1092 to models
1772 1093
1773 27.10.2011 M.K tag emdna-V09-04-32 1094 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1095 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1096 coverity errors.
1776 1097
1777 26.10.2011 M.K tag emdna-V09-04-31 1098 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared << 1099 change std::shared_ptr to CLHEP::shared_ptr
1779 1100
1780 26.10.2011 M.K. tag emdna-V09-04-30 1101 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1102 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1103 G4MolecularConfiguration::fManager added
1783 1104
1784 26.10.2011 M.K. tag emdna-V09-04-29 1105 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1106 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1107 Add electron solvatation process & models
1787 Add chemical processes 1108 Add chemical processes
1788 1109
1789 21.10.2011 M.K. tag emdna-V09-04-28 1110 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model << 1111 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1112 emdna-V09-04-24
1792 << 1113
1793 21.10.2011 M.K. tag emdna-V09-04-27 1114 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1115 CMake fixes from emdna-V09-04-24
1795 << 1116
1796 21.10.2011 M.K. tag emdna-V09-04-26 1117 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous << 1118 Bug fixes and new dev from the previous tag
1798 1119
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1120 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1121 Extension of ionisation by HZE proposed by Z. Francis
1801 1122
1802 20.10.2011 M.K. tag emdna-V09-04-24 1123 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1124 Bug fixes and new dev from the previous tag
1804 << 1125
1805 07.10.2011 M.K. tag emdna-V09-04-23 1126 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files << 1127 First tag with "molecules" files
1807 << 1128
1808 07.10.2011 M.K. tag emdna-V09-04-22 1129 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1130 Add molecules+management directory
1810 First tag with "management" files 1131 First tag with "management" files
1811 1132
1812 09.09.2011 G.Folger tag emdna-V09 1133 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer << 1134 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc << 1135 G4DNAMoleculeManager.cc
1815 1136
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1137 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1138 Updated sources.make and CMakeLists.txt
1818 1139
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1140 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1141 Reorganized whole architecture.
1821 1142
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1143 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1144 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1145 if no deexcitation)
1825 1146
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1147 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1148 Changed code (em0006) numbering for G4Exception
1828 1149
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1150 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1151 Switched to new G4Exception syntax
1831 1152
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1153 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1154 Added enhanced debug information in ionisation models
1834 1155
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1156 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1157 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1158
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1159 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1160 Removed obsolete information.
1840 1161
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1162 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1163 Updated deexcitation initialization in ionization models.
1843 1164
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1165 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1166 Coverity warnings removal
1846 1167
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1168 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1169 - Increased energy limits for
1849 G4DNAChargeIncrease 1170 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1171 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1172 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1173 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1174 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade << 1175 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1176 of ionisation classes for Auger e-
1856 1177
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1178 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1179 Further compilation warnings removal
1859 1180
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1181 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1182 Compilation warnings removal
1862 1183
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1184 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1185 added Atomic Deexcitation to Ionisation Models
1865 1186
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1187 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1188 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1189 G4DNADingfelderChargeIncreaseModel.cc.
1869 1190
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1191 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1192 Changed process sub-type numbering.
1872 1193
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1194 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1195 Fixed coverity warnings.
1875 1196
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1197 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1198 Updated all models for handling of variable density.
1878 1199
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1200 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1201 Addition of dependencies to configuration files.
1881 1202
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1203 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1204 Addition of all files.
1884 1205
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1206 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1207 Creation of dna sub-package in electromagnetic category.