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1 // Copyright (C) 2010, Guy Barrand. All rights 1 // Copyright (C) 2010, Guy Barrand. All rights reserved.
2 // See the file tools.license for terms. 2 // See the file tools.license for terms.
3 3
4 #ifndef toolx_raxml 4 #ifndef toolx_raxml
5 #define toolx_raxml 5 #define toolx_raxml
6 6
7 #include <tools/xml/aidas> 7 #include <tools/xml/aidas>
8 8
9 #include "xml/loader" 9 #include "xml/loader"
10 10
11 namespace toolx { 11 namespace toolx {
12 12
13 class raxml : public tools::xml::aidas, public 13 class raxml : public tools::xml::aidas, public xml::loader {
14 typedef tools::xml::aidas parent_aidas; 14 typedef tools::xml::aidas parent_aidas;
15 typedef xml::loader parent; 15 typedef xml::loader parent;
16 public: 16 public:
17 raxml(tools::xml::factory& a_fac,std::ostrea 17 raxml(tools::xml::factory& a_fac,std::ostream& a_out,bool a_verbose = false)
18 :parent_aidas() 18 :parent_aidas()
19 ,parent(a_fac,a_out,a_verbose) 19 ,parent(a_fac,a_out,a_verbose)
20 ,m_read_tag(0) 20 ,m_read_tag(0)
21 { 21 {
22 set_default_tags(parent::m_tags); 22 set_default_tags(parent::m_tags);
23 } 23 }
24 virtual ~raxml() {} 24 virtual ~raxml() {}
25 public: 25 public:
26 void set_read_tag(void* a_tag) {m_read_tag = 26 void set_read_tag(void* a_tag) {m_read_tag = a_tag;}
27 protected: 27 protected:
28 raxml(const raxml& a_from) 28 raxml(const raxml& a_from)
29 :parent_aidas(a_from) 29 :parent_aidas(a_from)
30 ,parent(a_from) 30 ,parent(a_from)
31 {} 31 {}
32 raxml& operator=(const raxml& a_from){ 32 raxml& operator=(const raxml& a_from){
33 parent_aidas::operator=(a_from); 33 parent_aidas::operator=(a_from);
34 parent::operator=(a_from); 34 parent::operator=(a_from);
35 return *this; 35 return *this;
36 } 36 }
37 public: 37 public:
38 bool load_file(const std::string& a_file,boo 38 bool load_file(const std::string& a_file,bool a_compressed){
39 m_objects.clear(); 39 m_objects.clear();
40 if(!parent::load_file(a_file,a_compressed) 40 if(!parent::load_file(a_file,a_compressed)) return false;
41 tools::xml::tree* top = top_item(); 41 tools::xml::tree* top = top_item();
42 if(!top) return false; 42 if(!top) return false;
43 const std::string& tag_name = top->tag_nam 43 const std::string& tag_name = top->tag_name();
44 if(tag_name!=s_aida()) return false; 44 if(tag_name!=s_aida()) return false;
45 45
46 {tools::xml::looper _for(*top); 46 {tools::xml::looper _for(*top);
47 while(tools::xml::tree* _tree = _for.next_ 47 while(tools::xml::tree* _tree = _for.next_tree()) {
48 48
49 const std::string& _tag_name = _tree->ta 49 const std::string& _tag_name = _tree->tag_name();
50 reader rder = find_reader(_tag_name); 50 reader rder = find_reader(_tag_name);
51 if(!rder) { 51 if(!rder) {
52 m_out << "toolx::raxml::load_file :" 52 m_out << "toolx::raxml::load_file :"
53 << " reader not found for " << t 53 << " reader not found for " << tools::sout(_tag_name)
54 << std::endl; 54 << std::endl;
55 //m_objects.clear(); //keep already lo 55 //m_objects.clear(); //keep already loaded objects.
56 return false; 56 return false;
57 } else { 57 } else {
58 tools::raxml_out ro = rder(*_tree,m_ou 58 tools::raxml_out ro = rder(*_tree,m_out,m_verbose,m_read_tag);
59 if(ro.object()) m_objects.push_back(ro 59 if(ro.object()) m_objects.push_back(ro);
60 } 60 }
61 61
62 }} 62 }}
63 63
64 return true; 64 return true;
65 } 65 }
66 protected: 66 protected:
67 void* m_read_tag; 67 void* m_read_tag;
68 }; 68 };
69 69
70 } 70 }
71 71
72 #endif 72 #endif