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Geant4/examples/extended/medical/dna/wvalue/README

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Diff markup

Differences between /examples/extended/medical/dna/wvalue/README (Version 11.3.0) and /examples/extended/medical/dna/wvalue/README (Version 10.3.p2)


  1      =========================================      1      =========================================================
  2       Geant4 - wvalue example                       2       Geant4 - wvalue example
  3      =========================================      3      =========================================================
  4                                                     4 
  5                                 README file         5                                 README file
  6                           --------------------      6                           ----------------------
  7                                                     7 
  8                            CORRESPONDING AUTHO <<   8                            CORRESPONDING AUTHOR 
  9                                                     9 
 10 S. Incerti (a, *)                              <<  10 S. Incerti et al. (a, *)
 11 a. LP2i, IN2P3 / CNRS / Bordeaux University, 3 <<  11 a. Centre d'Etudes Nucleaires de Bordeaux-Gradignan 
 12 * e-mail: incerti@lp2ib.in2p3.fr               <<  12 (CENBG), IN2P3 / CNRS / Bordeaux University, 33175 Gradignan, France
 13                                                <<  13 * e-mail:incerti@cenbg.in2p3.fr
 14 ---->0. INTRODUCTION.                          << 
 15                                                    14 
                                                   >>  15 ---->0. INTRODUCTION.                                                    
                                                   >>  16                                                                        
 16 The wvalue example shows how to calculate w in     17 The wvalue example shows how to calculate w in liquid water
 17 for e- using the Geant4-DNA physics processes  <<  18 for e- using the Geant4-DNA physics processes and models. 
 18                                                    19 
 19 w is computed as the ratio of the incident par     20 w is computed as the ratio of the incident particle energy
 20 and the total number of ionisations.               21 and the total number of ionisations.
 21                                                    22 
 22 It is adapted from the svalue example.         <<  23 It is adapted from svalue.
                                                   >>  24 
                                                   >>  25 *** It is a preliminary version which might be buggy ***
 23                                                    26 
 24 This example is provided by the Geant4-DNA col     27 This example is provided by the Geant4-DNA collaboration.
 25                                                    28 
 26 These processes and models are further describ     29 These processes and models are further described at:
 27 http://geant4-dna.org                              30 http://geant4-dna.org
 28                                                    31 
 29 Any report or published results obtained using <<  32 Any report or published results obtained using the Geant4-DNA software shall 
 30 cite the following Geant4-DNA collaboration pu     33 cite the following Geant4-DNA collaboration publications:
 31 Med. Phys. 51 (2024) 5873–5889               << 
 32 Med. Phys. 45 (2018) e722-e739                 << 
 33 Phys. Med. 31 (2015) 861-874                       34 Phys. Med. 31 (2015) 861-874
 34 Med. Phys. 37 (2010) 4692-4708                     35 Med. Phys. 37 (2010) 4692-4708
 35 Int. J. Model. Simul. Sci. Comput. 1 (2010) 15 << 
 36                                                    36 
 37 This example is presented in the following pap     37 This example is presented in the following paper, which shall also be cited:
 38 Med. Phys. 42 (2015) 3870-3876                 <<  38 Med. Phys. 42 (2015) 3870-3876 
 39                                                    39 
 40 ---->1. GEOMETRY SET-UP.                           40 ---->1. GEOMETRY SET-UP.
 41                                                <<  41  
 42 The geometry is a 1 m radius sphere of liquid      42 The geometry is a 1 m radius sphere of liquid water (G4_WATER
 43 material). Particles are shot randomly from th     43 material). Particles are shot randomly from the sphere centre.
 44                                                    44 
 45 Radius of the sphere, physics constructor and  <<  45 Radius of the sphere, physics constructor and energy can be 
 46 controlled by the wvalue.in macro file.            46 controlled by the wvalue.in macro file.
 47                                                    47 
 48 The PrimaryGeneratorAction class is adapted (G <<  48 The PrimaryGeneratorAction class is adapted (G4 state dependent) 
 49 in order to enable generic physics list usage  <<  49 in order to enable generic physics list usage 
 50 (empty modular physics list).                      50 (empty modular physics list).
 51                                                    51 
 52 ---->2. SET-UP                                 <<  52 ---->2. SET-UP 
 53                                                <<  53                                                                         
 54 Make sure G4LEDATA points to the low energy el     54 Make sure G4LEDATA points to the low energy electromagnetic data files.
 55                                                    55 
 56 The code can be compiled with cmake.               56 The code can be compiled with cmake.
 57                                                    57 
 58 It works in MT mode.                               58 It works in MT mode.
 59                                                    59 
 60 ---->3. HOW TO RUN THE EXAMPLE                 <<  60 ---->3. HOW TO RUN THE EXAMPLE                                         
 61                                                    61 
 62 In interactive mode, run:                          62 In interactive mode, run:
 63                                                    63 
 64 ./wvalue wvalue.in                                 64 ./wvalue wvalue.in
 65                                                    65 
 66 The wvalue.in macro allows a full control of t     66 The wvalue.in macro allows a full control of the simulation.
 67                                                    67 
 68 ---->4. PHYSICS                                    68 ---->4. PHYSICS
 69                                                    69 
 70 You can select Geant4-DNA physics constructor      70 You can select Geant4-DNA physics constructor in wvalue.in.
 71                                                    71 
 72 A tracking cut can be applied if requested.        72 A tracking cut can be applied if requested.
 73                                                    73 
 74 ---->5. SIMULATION OUTPUT AND RESULT ANALYSIS  <<  74 ---->5. SIMULATION OUTPUT AND RESULT ANALYSIS                                    
 75                                                    75 
 76 The output results consist in a text file (wva <<  76 The output results consist in a text file (wvalue.txt), containing :
 77 - the energy of incident particles (in eV)         77 - the energy of incident particles (in eV)
 78 - the mean number of ionisations                   78 - the mean number of ionisations
 79 - its rms                                          79 - its rms
 80 - the w value (in eV)                              80 - the w value (in eV)
 81 - its rms (in eV)                                  81 - its rms (in eV)
 82                                                    82 
 83 Note: rms values correspond to standard deviat     83 Note: rms values correspond to standard deviation.
 84                                                    84 
 85 In addition, another macro (histo.in) is also  <<  85 In addition, another macro (histo.in) is also provided including 
 86 a series of histograms:                        <<  86 a series of histograms :
 87 - histogram #1 : nb of ionisation interactions     87 - histogram #1 : nb of ionisation interactions per event
 88 - histogram #2 : total energy deposited in abs     88 - histogram #2 : total energy deposited in absorber
 89 - histogram #3 : true track length of the prim     89 - histogram #3 : true track length of the primary particle
 90 - histogram #4 : true step size of the primary     90 - histogram #4 : true step size of the primary particle
 91 - histogram #5 : projected range of the primar     91 - histogram #5 : projected range of the primary particle
 92 - histogram #6 : true track length of charged      92 - histogram #6 : true track length of charged secondaries
 93 - histogram #7 : true track length of charged      93 - histogram #7 : true track length of charged secondaries
                                                   >>  94 
                                                   >>  95 ---------------------------------------------------------------------------
                                                   >>  96 
                                                   >>  97 Should you have any enquiry, please do not hesitate to contact: 
                                                   >>  98 incerti@cenbg.in2p3.fr
                                                   >>  99