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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us << 27 // Any report or published results obtained using the Geant4-DNA software
28 // and the DNA geometry given in the Geom_DNA << 28 // and the DNA geometry given in the Geom_DNA example
29 // shall cite the following Geant4-DNA collabo 29 // shall cite the following Geant4-DNA collaboration publications:
30 // [1] NIM B 298 (2013) 47-54 30 // [1] NIM B 298 (2013) 47-54
31 // [2] Med. Phys. 37 (2010) 4692-4708 31 // [2] Med. Phys. 37 (2010) 4692-4708
32 // The Geant4-DNA web site is available at htt 32 // The Geant4-DNA web site is available at http://geant4-dna.org
33 // 33 //
34 //....oooOO0OOooo........oooOO0OOooo........oo 34 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
35 /// \file SteppingAction.cc 35 /// \file SteppingAction.cc
36 /// \brief Implementation of the SteppingActio 36 /// \brief Implementation of the SteppingAction class
37 37
38 #include "SteppingAction.hh" 38 #include "SteppingAction.hh"
39 39
40 // G4 40 // G4
41 #include "CommandLineParser.hh" << 41 #include <globals.hh>
42 <<
43 #include "G4AnalysisManager.hh" <<
44 <<
45 #include <G4SystemOfUnits.hh> 42 #include <G4SystemOfUnits.hh>
46 #include <G4Track.hh> <<
47 #include <G4VProcess.hh> 43 #include <G4VProcess.hh>
48 #include <globals.hh> << 44 #include <G4Track.hh>
>> 45
>> 46 #include "Analysis.hh"
>> 47 #include "CommandLineParser.hh"
49 48
50 using namespace G4DNAPARSER; 49 using namespace G4DNAPARSER;
51 50
52 //....oooOO0OOooo........oooOO0OOooo........oo 51 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
53 52
54 SteppingAction::SteppingAction() : G4UserStepp << 53 SteppingAction::SteppingAction() : G4UserSteppingAction()
>> 54 {
>> 55 }
55 56
56 //....oooOO0OOooo........oooOO0OOooo........oo 57 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
57 58
58 SteppingAction::~SteppingAction() {} << 59 SteppingAction::~SteppingAction()
>> 60 {
>> 61 }
59 62
60 //....oooOO0OOooo........oooOO0OOooo........oo 63 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
61 64
62 void SteppingAction::UserSteppingAction(const 65 void SteppingAction::UserSteppingAction(const G4Step* step)
63 { 66 {
64 G4double flagParticle = 0.; 67 G4double flagParticle = 0.;
65 G4double flagProcess = 0.; 68 G4double flagProcess = 0.;
66 G4double flagVolume = 0.; 69 G4double flagVolume = 0.;
67 G4double x, y, z, xp, yp, zp; 70 G4double x, y, z, xp, yp, zp;
68 G4double dE; 71 G4double dE;
69 72
70 dE = step->GetTotalEnergyDeposit() / eV; 73 dE = step->GetTotalEnergyDeposit() / eV;
71 74
72 const G4String& particleName = << 75 const G4String& particleName = step->GetTrack()->GetDynamicParticle()
73 step->GetTrack()->GetDynamicParticle()->Ge << 76 ->GetDefinition()->GetParticleName();
74 77
75 const G4String& processName = step->GetPostS << 78 const G4String& processName =
>> 79 step->GetPostStepPoint()->GetProcessDefinedStep()->GetProcessName();
76 80
77 const G4String& volumeName = step->GetPreSte << 81 const G4String& volumeName =
>> 82 step->GetPreStepPoint()->GetPhysicalVolume()->GetName();
78 83
79 if (particleName == "e-") << 84 if (particleName == "e-") flagParticle = 10;
80 flagParticle = 10; << 85 else if (particleName == "proton") flagParticle = 20;
81 else if (particleName == "proton") << 86 else if (particleName == "hydrogen") flagParticle = 30;
82 flagParticle = 20; << 87 else if (particleName == "alpha") flagParticle = 40;
83 else if (particleName == "hydrogen") << 88 else if (particleName == "alpha+") flagParticle = 50;
84 flagParticle = 30; << 89 else if (particleName == "helium") flagParticle = 60;
85 else if (particleName == "alpha") << 90
86 flagParticle = 40; << 91 if (processName == "e-_G4DNAElastic") flagProcess = 11;
87 else if (particleName == "alpha+") << 92 else if (processName == "e-_G4DNAExcitation") flagProcess = 12;
88 flagParticle = 50; << 93 else if (processName == "e-_G4DNAIonisation") flagProcess = 13;
89 else if (particleName == "helium") << 94 else if (processName == "e-_G4DNAAttachment") flagProcess = 14;
90 flagParticle = 60; << 95 else if (processName == "e-_G4DNAVibExcitation") flagProcess = 15;
91 << 96 else if (processName == "eCapture") flagProcess = 16;
92 if (processName == "e-_G4DNAElastic") << 97 // if (step->GetPostStepPoint()->GetProcessDefinedStep()
93 flagProcess = 11; << 98 // ->GetProcessName()=="msc") flagProcess =17;
94 else if (processName == "e-_G4DNAExcitation" << 99
95 flagProcess = 12; << 100 else if (processName == "proton_G4DNAExcitation") flagProcess = 21;
96 else if (processName == "e-_G4DNAIonisation" << 101 else if (processName == "proton_G4DNAIonisation") flagProcess = 22;
97 flagProcess = 13; << 102 else if (processName == "proton_G4DNAChargeDecrease") flagProcess = 23;
98 else if (processName == "e-_G4DNAAttachment" << 103
99 flagProcess = 14; << 104 else if (processName == "hydrogen_G4DNAExcitation") flagProcess = 31;
100 else if (processName == "e-_G4DNAVibExcitati << 105 else if (processName == "hydrogen_G4DNAIonisation") flagProcess = 32;
101 flagProcess = 15; << 106 else if (processName == "hydrogen_G4DNAChargeIncrease") flagProcess = 33;
102 else if (processName == "eCapture") << 107
103 flagProcess = 16; << 108 else if (processName == "alpha_G4DNAExcitation") flagProcess = 41;
104 // if (step->GetPostStepPoint()->GetProcess << 109 else if (processName == "alpha_G4DNAIonisation") flagProcess = 42;
105 // ->GetProcessName()=="msc") flagPro << 110 else if (processName == "alpha_G4DNAChargeDecrease") flagProcess = 43;
106 << 111
107 else if (processName == "proton_G4DNAExcitat << 112 else if (processName == "alpha+_G4DNAExcitation") flagProcess = 51;
108 flagProcess = 21; << 113 else if (processName == "alpha+_G4DNAIonisation") flagProcess = 52;
109 else if (processName == "proton_G4DNAIonisat << 114 else if (processName == "alpha+_G4DNAChargeDecrease") flagProcess = 53;
110 flagProcess = 22; << 115 else if (processName == "alpha+_G4DNAChargeIncrease") flagProcess = 54;
111 else if (processName == "proton_G4DNAChargeD << 116
112 flagProcess = 23; << 117 else if (processName == "helium_G4DNAExcitation") flagProcess = 61;
113 << 118 else if (processName == "helium_G4DNAIonisation") flagProcess = 62;
114 else if (processName == "hydrogen_G4DNAExcit << 119 else if (processName == "helium_G4DNAChargeIncrease") flagProcess = 63;
115 flagProcess = 31; << 120
116 else if (processName == "hydrogen_G4DNAIonis << 121 // if (step->GetPreStepPoint()->GetProcessDefinedStep()->
117 flagProcess = 32; << 122 // GetProcessName()=="hIoni") flagProcess =24;
118 else if (processName == "hydrogen_G4DNACharg << 123 // if (step->GetPreStepPoint()->GetProcessDefinedStep()->
119 flagProcess = 33; << 124 // GetProcessName()=="eIoni") flagProcess =18;
120 << 125
121 else if (processName == "alpha_G4DNAExcitati << 126 if (volumeName == "physi sugar 2") flagVolume = 1;
122 flagProcess = 41; << 127 else if (volumeName == "physi sugar 4") flagVolume = 2;
123 else if (processName == "alpha_G4DNAIonisati << 128
124 flagProcess = 42; << 129 if (flagVolume != 0 && dE != 0)
125 else if (processName == "alpha_G4DNAChargeDe << 130 {
126 flagProcess = 43; <<
127 <<
128 else if (processName == "alpha+_G4DNAExcitat <<
129 flagProcess = 51; <<
130 else if (processName == "alpha+_G4DNAIonisat <<
131 flagProcess = 52; <<
132 else if (processName == "alpha+_G4DNAChargeD <<
133 flagProcess = 53; <<
134 else if (processName == "alpha+_G4DNAChargeI <<
135 flagProcess = 54; <<
136 <<
137 else if (processName == "helium_G4DNAExcitat <<
138 flagProcess = 61; <<
139 else if (processName == "helium_G4DNAIonisat <<
140 flagProcess = 62; <<
141 else if (processName == "helium_G4DNAChargeI <<
142 flagProcess = 63; <<
143 <<
144 // if (step->GetPreStepPoint()->GetProcessDe <<
145 // GetProcessName()=="hIoni") flagPr <<
146 // if (step->GetPreStepPoint()->GetProcessDe <<
147 // GetProcessName()=="eIoni") flagPr <<
148 <<
149 if (volumeName == "physi sugar 2") <<
150 flagVolume = 1; <<
151 else if (volumeName == "physi sugar 4") <<
152 flagVolume = 2; <<
153 131
154 if (flagVolume != 0 && dE != 0) { <<
155 x = step->GetPreStepPoint()->GetPosition() 132 x = step->GetPreStepPoint()->GetPosition().x() / nanometer;
156 y = step->GetPreStepPoint()->GetPosition() 133 y = step->GetPreStepPoint()->GetPosition().y() / nanometer;
157 z = step->GetPreStepPoint()->GetPosition() 134 z = step->GetPreStepPoint()->GetPosition().z() / nanometer;
158 xp = step->GetPostStepPoint()->GetPosition 135 xp = step->GetPostStepPoint()->GetPosition().x() / nanometer;
159 yp = step->GetPostStepPoint()->GetPosition 136 yp = step->GetPostStepPoint()->GetPosition().y() / nanometer;
160 zp = step->GetPostStepPoint()->GetPosition 137 zp = step->GetPostStepPoint()->GetPosition().z() / nanometer;
161 138
162 // The lines below could be put upper to g 139 // The lines below could be put upper to gain time in the simulation
163 // Added here for testing that all the ret << 140 // Added here for testing that all the retrieve information are
164 // correctly working 141 // correctly working
165 CommandLineParser* parser = CommandLinePar 142 CommandLineParser* parser = CommandLineParser::GetParser();
166 Command* command(0); 143 Command* command(0);
167 if ((command = parser->GetCommandIfActive( << 144 if((command = parser->GetCommandIfActive("-out"))==0) return;
168 145
169 // get analysis manager 146 // get analysis manager
170 G4AnalysisManager* analysisManager = G4Ana 147 G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
171 148
172 analysisManager->FillNtupleDColumn(0, flag 149 analysisManager->FillNtupleDColumn(0, flagParticle);
173 analysisManager->FillNtupleDColumn(1, flag 150 analysisManager->FillNtupleDColumn(1, flagProcess);
174 analysisManager->FillNtupleDColumn(2, flag 151 analysisManager->FillNtupleDColumn(2, flagVolume);
175 analysisManager->FillNtupleDColumn(3, xp); 152 analysisManager->FillNtupleDColumn(3, xp);
176 analysisManager->FillNtupleDColumn(4, yp); 153 analysisManager->FillNtupleDColumn(4, yp);
177 analysisManager->FillNtupleDColumn(5, zp); 154 analysisManager->FillNtupleDColumn(5, zp);
178 analysisManager->FillNtupleDColumn(6, dE); 155 analysisManager->FillNtupleDColumn(6, dE);
179 analysisManager->FillNtupleDColumn( << 156 analysisManager->FillNtupleDColumn(7,
180 7, std::sqrt((x - xp) * (x - xp) + (y - << 157 std::sqrt((x - xp) * (x - xp)
>> 158 + (y - yp) * (y - yp)
>> 159 + (z - zp) * (z - zp)));
181 160
182 analysisManager->AddNtupleRow(); 161 analysisManager->AddNtupleRow();
183 } 162 }
>> 163
184 } 164 }
185 165