| Geant4 Cross Reference |
1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us << 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // The Geant4-DNA web site is available at htt 30 // The Geant4-DNA web site is available at http://geant4-dna.org
31 // 31 //
32 /// \file RunAction.cc 32 /// \file RunAction.cc
33 /// \brief Implementation of the RunAction cla 33 /// \brief Implementation of the RunAction class
34 34
35 #include "RunAction.hh" 35 #include "RunAction.hh"
36 <<
37 #include "CommandLineParser.hh" <<
38 <<
39 #include "G4AnalysisManager.hh" <<
40 #include "G4Run.hh" 36 #include "G4Run.hh"
41 #include "G4RunManager.hh" 37 #include "G4RunManager.hh"
>> 38 #include "G4AnalysisManager.hh"
42 #include "G4Threading.hh" 39 #include "G4Threading.hh"
>> 40 #include "CommandLineParser.hh"
43 41
44 using namespace G4DNAPARSER; 42 using namespace G4DNAPARSER;
45 43
46 void PrintNParticles(std::map<const G4Particle 44 void PrintNParticles(std::map<const G4ParticleDefinition*, int>& container);
47 45
48 //....oooOO0OOooo........oooOO0OOooo........oo 46 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
49 47
50 RunAction::RunAction() : G4UserRunAction(), fI << 48 RunAction::RunAction() : G4UserRunAction(),
>> 49 fInitialized(0), fDebug(false)
>> 50 {}
51 51
52 //....oooOO0OOooo........oooOO0OOooo........oo 52 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
53 53
54 RunAction::~RunAction() {} << 54 RunAction::~RunAction()
>> 55 {}
55 56
56 //....oooOO0OOooo........oooOO0OOooo........oo 57 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
57 58
58 void RunAction::BeginOfRunAction(const G4Run* 59 void RunAction::BeginOfRunAction(const G4Run* run)
59 { 60 {
60 // In this example, we considered that the s 61 // In this example, we considered that the same class was
61 // used for both master and worker threads. 62 // used for both master and worker threads.
62 // However, in case the run action is long, 63 // However, in case the run action is long,
63 // for better code review, this practice is 64 // for better code review, this practice is not recommanded.
64 // 65 //
65 // Please note, in the example provided with 66 // Please note, in the example provided with the Geant4 X beta version,
66 // this RunAction class were not used by the 67 // this RunAction class were not used by the master thread.
67 68
68 bool sequential = <<
69 (G4RunManager::GetRunManager()->GetRunMana <<
70 69
71 if (isMaster && sequential == false) << 70 bool sequential = (G4RunManager::GetRunManager()->GetRunManagerType() ==
>> 71 G4RunManager::sequentialRM);
>> 72
>> 73 if(isMaster && sequential == false )
72 // WARNING : in sequential mode, isMaster == 74 // WARNING : in sequential mode, isMaster == true
73 { 75 {
74 BeginMaster(run); 76 BeginMaster(run);
75 } 77 }
76 else << 78 else BeginWorker(run);
77 BeginWorker(run); <<
78 } 79 }
79 80
80 //....oooOO0OOooo........oooOO0OOooo........oo 81 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
81 82
82 void RunAction::EndOfRunAction(const G4Run* ru 83 void RunAction::EndOfRunAction(const G4Run* run)
83 { 84 {
84 bool sequential = <<
85 (G4RunManager::GetRunManager()->GetRunMana <<
86 85
87 if (isMaster && sequential == false) { << 86 bool sequential = (G4RunManager::GetRunManager()->GetRunManagerType() ==
>> 87 G4RunManager::sequentialRM);
>> 88
>> 89 if(isMaster && sequential == false)
>> 90 {
88 EndMaster(run); 91 EndMaster(run);
89 } 92 }
90 else { << 93 else
>> 94 {
91 EndWorker(run); 95 EndWorker(run);
92 } 96 }
93 } 97 }
94 98
95 //....oooOO0OOooo........oooOO0OOooo........oo 99 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
96 100
97 void RunAction::BeginMaster(const G4Run* run) 101 void RunAction::BeginMaster(const G4Run* run)
98 { 102 {
99 if (fDebug) { << 103 if(fDebug)
100 bool sequential = << 104 {
101 (G4RunManager::GetRunManager()->GetRunMa << 105 bool sequential = (G4RunManager::GetRunManager()->GetRunManagerType() ==
>> 106 G4RunManager::sequentialRM);
102 G4cout << "=============================== 107 G4cout << "===================================" << G4endl;
103 if (!sequential) G4cout << "============== << 108 if(!sequential)
>> 109 G4cout << "================ RunAction::BeginMaster" << G4endl;
104 PrintRunInfo(run); 110 PrintRunInfo(run);
105 G4cout << "=============================== 111 G4cout << "===================================" << G4endl;
106 } 112 }
107 } 113 }
108 114
109 //....oooOO0OOooo........oooOO0OOooo........oo 115 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
110 116
111 void RunAction::BeginWorker(const G4Run* run) 117 void RunAction::BeginWorker(const G4Run* run)
112 { 118 {
113 if (fDebug) { << 119 if (fDebug)
>> 120 {
114 G4cout << "=============================== 121 G4cout << "===================================" << G4endl;
115 G4cout << "================ RunAction::Beg 122 G4cout << "================ RunAction::BeginWorker" << G4endl;
116 PrintRunInfo(run); 123 PrintRunInfo(run);
117 G4cout << "=============================== 124 G4cout << "===================================" << G4endl;
118 } 125 }
119 if (fInitialized == false) InitializeWorker( << 126 if(fInitialized == false) InitializeWorker(run);
120 127
121 CreateNtuple(); 128 CreateNtuple();
122 } 129 }
123 130
124 //....oooOO0OOooo........oooOO0OOooo........oo 131 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
125 132
126 void RunAction::EndMaster(const G4Run*) {} << 133 void RunAction::EndMaster(const G4Run*)
>> 134 {
>> 135 }
127 136
128 //....oooOO0OOooo........oooOO0OOooo........oo 137 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
129 138
130 void RunAction::EndWorker(const G4Run* run) 139 void RunAction::EndWorker(const G4Run* run)
131 { 140 {
132 if (fDebug) { << 141 if(fDebug)
>> 142 {
133 PrintRunInfo(run); 143 PrintRunInfo(run);
134 } 144 }
135 145
136 G4int nofEvents = run->GetNumberOfEvent(); 146 G4int nofEvents = run->GetNumberOfEvent();
137 if (nofEvents == 0) { << 147 if ( nofEvents == 0 )
138 if (fDebug) { << 148 {
139 G4cout << "================ NO EVENTS TR << 149 if(fDebug)
>> 150 {
>> 151 G4cout << "================ NO EVENTS TREATED IN THIS RUN ==> Exit"
>> 152 << G4endl;
140 } 153 }
141 return; 154 return;
142 } 155 }
143 156
144 /////////////// 157 ///////////////
145 // Write Ntuple 158 // Write Ntuple
146 // 159 //
147 WriteNtuple(); 160 WriteNtuple();
148 } 161 }
149 162
150 //....oooOO0OOooo........oooOO0OOooo........oo 163 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
151 164
152 void RunAction::InitializeWorker(const G4Run*) 165 void RunAction::InitializeWorker(const G4Run*)
153 { 166 {
154 // Initialize worker here 167 // Initialize worker here
155 // example: you want to retrieve pointers to 168 // example: you want to retrieve pointers to other user actions
156 fInitialized = true; 169 fInitialized = true;
157 } 170 }
158 171
159 //....oooOO0OOooo........oooOO0OOooo........oo 172 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
160 173
161 void RunAction::CreateNtuple() 174 void RunAction::CreateNtuple()
162 { 175 {
163 // Book histograms, ntuple 176 // Book histograms, ntuple
164 177
165 // Create analysis manager 178 // Create analysis manager
166 179
167 CommandLineParser* parser = CommandLineParse 180 CommandLineParser* parser = CommandLineParser::GetParser();
168 Command* command(0); 181 Command* command(0);
169 if ((command = parser->GetCommandIfActive("- << 182 if((command = parser->GetCommandIfActive("-out"))==0) return;
170 183
171 G4cout << "##### Create analysis manager " << 184 G4cout << "##### Create analysis manager " << " " << this << G4endl;
172 << " " << this << G4endl; <<
173 G4AnalysisManager* analysisManager = G4Analy 185 G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
174 analysisManager->SetDefaultFileType("root"); 186 analysisManager->SetDefaultFileType("root");
175 // if(!analysisManager->IsActive()) {return << 187 // if(!analysisManager->IsActive()) {return; }
176 188
177 G4cout << "Using " << analysisManager->GetTy << 189 G4cout << "Using " << analysisManager->GetType() <<
>> 190 " analysis manager" << G4endl;
178 191
179 // Create directories 192 // Create directories
180 193
181 // analysisManager->SetHistoDirectoryName("h << 194 //analysisManager->SetHistoDirectoryName("histograms");
182 // analysisManager->SetNtupleDirectoryName(" << 195 //analysisManager->SetNtupleDirectoryName("ntuple");
183 analysisManager->SetVerboseLevel(1); 196 analysisManager->SetVerboseLevel(1);
184 197
185 // Open an output file 198 // Open an output file
186 G4String fileName; 199 G4String fileName;
187 if (command->GetOption().empty() == false) { << 200 if(command->GetOption().empty() == false)
>> 201 {
188 fileName = command->GetOption(); 202 fileName = command->GetOption();
189 } 203 }
190 else { << 204 else
191 fileName = "wholeNuclearDNA"; << 205 {
192 // fileName = command->GetDefaultOption( << 206 fileName = "wholeNuclearDNA";
>> 207 // fileName = command->GetDefaultOption(); // should work as well
193 } 208 }
194 analysisManager->OpenFile(fileName); 209 analysisManager->OpenFile(fileName);
195 210
196 // Creating ntuple 211 // Creating ntuple
197 analysisManager->CreateNtuple("ntuple", "geo 212 analysisManager->CreateNtuple("ntuple", "geom_dna");
198 analysisManager->CreateNtupleDColumn("flagPa 213 analysisManager->CreateNtupleDColumn("flagParticle");
199 analysisManager->CreateNtupleDColumn("flagPr 214 analysisManager->CreateNtupleDColumn("flagProcess");
200 analysisManager->CreateNtupleDColumn("flagVo 215 analysisManager->CreateNtupleDColumn("flagVolume");
201 analysisManager->CreateNtupleDColumn("x"); 216 analysisManager->CreateNtupleDColumn("x");
202 analysisManager->CreateNtupleDColumn("y"); 217 analysisManager->CreateNtupleDColumn("y");
203 analysisManager->CreateNtupleDColumn("z"); 218 analysisManager->CreateNtupleDColumn("z");
204 analysisManager->CreateNtupleDColumn("edep") 219 analysisManager->CreateNtupleDColumn("edep");
205 analysisManager->CreateNtupleDColumn("stepLe 220 analysisManager->CreateNtupleDColumn("stepLength");
206 221
207 analysisManager->FinishNtuple(); 222 analysisManager->FinishNtuple();
>> 223
208 } 224 }
209 225
210 //....oooOO0OOooo........oooOO0OOooo........oo 226 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
211 227
212 void RunAction::WriteNtuple() 228 void RunAction::WriteNtuple()
213 { 229 {
214 CommandLineParser* parser = CommandLineParse 230 CommandLineParser* parser = CommandLineParser::GetParser();
215 Command* commandLine(0); 231 Command* commandLine(0);
216 if ((commandLine = parser->GetCommandIfActiv << 232 if((commandLine = parser->GetCommandIfActive("-out"))==0) return;
217 233
218 // print histogram statistics 234 // print histogram statistics
219 // 235 //
220 G4AnalysisManager* analysisManager = G4Analy 236 G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
221 // if(!analysisManager->IsActive()) {return << 237 // if(!analysisManager->IsActive()) {return; }
222 238
223 // save histograms 239 // save histograms
224 // 240 //
225 analysisManager->Write(); 241 analysisManager->Write();
226 analysisManager->CloseFile(); 242 analysisManager->CloseFile();
227 analysisManager->Clear(); 243 analysisManager->Clear();
228 } 244 }
229 245
230 //....oooOO0OOooo........oooOO0OOooo........oo 246 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
231 247
232 void RunAction::PrintRunInfo(const G4Run* run) 248 void RunAction::PrintRunInfo(const G4Run* run)
233 { 249 {
234 G4cout << "================ Run is = " << ru << 250 G4cout << "================ Run is = "
235 G4cout << "================ Run type is = " << 251 << run->GetRunID() << G4endl;
236 << G4endl; << 252 G4cout << "================ Run type is = "
237 G4cout << "================ Event processed << 253 << G4RunManager::GetRunManager()->GetRunManagerType() << G4endl;
238 G4cout << "================ Nevent = " << ru << 254 G4cout << "================ Event processed = "
>> 255 << run->GetNumberOfEventToBeProcessed() << G4endl;
>> 256 G4cout << "================ Nevent = "
>> 257 << run->GetNumberOfEvent() << G4endl;
239 } 258 }
240 //....oooOO0OOooo........oooOO0OOooo........oo 259 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
241 260