| Geant4 Cross Reference |
1 // 1
2 // *******************************************
3 // * License and Disclaimer
4 // *
5 // * The Geant4 software is copyright of th
6 // * the Geant4 Collaboration. It is provided
7 // * conditions of the Geant4 Software License
8 // * LICENSE and available at http://cern.ch/
9 // * include a list of copyright holders.
10 // *
11 // * Neither the authors of this software syst
12 // * institutes,nor the agencies providing fin
13 // * work make any representation or warran
14 // * regarding this software system or assum
15 // * use. Please see the license in the file
16 // * for the full disclaimer and the limitatio
17 // *
18 // * This code implementation is the result
19 // * technical work of the GEANT4 collaboratio
20 // * By using, copying, modifying or distri
21 // * any work based on the software) you ag
22 // * use in resulting scientific publicati
23 // * acceptance of all terms of the Geant4 Sof
24 // *******************************************
25 //
26 // This example is provided by the Geant4-DNA
27 // Any report or published results obtained us
28 // and the DNA geometry given in the Geom_DNA
29 // shall cite the following Geant4-DNA collabo
30 // [1] NIM B 298 (2013) 47-54
31 // [2] Med. Phys. 37 (2010) 4692-4708
32 // The Geant4-DNA web site is available at htt
33 //
34 /// \file ChromosomeParameterisation.cc
35 /// \brief Implementation of the ChromosomePar
36
37 #include <ChromosomeParameterisation.hh>
38
39 // STD
40 #include <fstream>
41
42 // G4
43 #include <CLHEP/Units/SystemOfUnits.h>
44 #include <G4VPhysicalVolume.hh>
45
46 using namespace std;
47 using CLHEP::degree;
48 using CLHEP::nanometer;
49
50 //....oooOO0OOooo........oooOO0OOooo........oo
51
52 ChromosomeParameterisation::ChromosomeParamete
53 : G4VPVParameterisation()
54 {
55 ifstream f(filename, ios::in);
56 if (!f) return;
57
58 fPositions.reserve(100);
59 fRotations.reserve(100);
60
61 while (!f.eof()) {
62 double x, y, z, rot;
63 f >> x >> y >> z >> rot;
64 fPositions.push_back(new G4ThreeVector(x *
65 fRotations.push_back(new G4RotationMatrix(
66 }
67 }
68
69 //....oooOO0OOooo........oooOO0OOooo........oo
70
71 ChromosomeParameterisation::~ChromosomeParamet
72 {
73 unsigned int i;
74 for (i = 0; i < fPositions.size(); i++)
75 delete fPositions[i];
76 for (i = 0; i < fRotations.size(); i++)
77 delete fRotations[i];
78 }
79
80 //....oooOO0OOooo........oooOO0OOooo........oo
81
82 void ChromosomeParameterisation::ComputeDimens
83
84 {}
85
86 //....oooOO0OOooo........oooOO0OOooo........oo
87
88 void ChromosomeParameterisation::ComputeTransf
89
90 {
91 // see passive vs active method to specify
92 // this transformation
93 physVol->SetTranslation(*fPositions[copyNo])
94 physVol->SetRotation(fRotations[copyNo]);
95 }
96