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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
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17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
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24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us << 27 // Any report or published results obtained using the Geant4-DNA software
28 // and the DNA geometry given in the Geom_DNA << 28 // and the DNA geometry given in the Geom_DNA example
29 // shall cite the following Geant4-DNA collabo 29 // shall cite the following Geant4-DNA collaboration publications:
30 // [1] NIM B 298 (2013) 47-54 30 // [1] NIM B 298 (2013) 47-54
31 // [2] Med. Phys. 37 (2010) 4692-4708 31 // [2] Med. Phys. 37 (2010) 4692-4708
32 // The Geant4-DNA web site is available at htt 32 // The Geant4-DNA web site is available at http://geant4-dna.org
33 // 33 //
34 /// \file ChromosomeParameterisation.cc 34 /// \file ChromosomeParameterisation.cc
35 /// \brief Implementation of the ChromosomePar 35 /// \brief Implementation of the ChromosomeParameterisation class
36 36
37 #include <ChromosomeParameterisation.hh> 37 #include <ChromosomeParameterisation.hh>
38 38
39 // STD 39 // STD
40 #include <fstream> 40 #include <fstream>
41 41
42 // G4 42 // G4
43 #include <CLHEP/Units/SystemOfUnits.h> 43 #include <CLHEP/Units/SystemOfUnits.h>
44 #include <G4VPhysicalVolume.hh> 44 #include <G4VPhysicalVolume.hh>
45 45
46 using namespace std; 46 using namespace std;
47 using CLHEP::degree; <<
48 using CLHEP::nanometer; 47 using CLHEP::nanometer;
>> 48 using CLHEP::degree;
49 49
50 //....oooOO0OOooo........oooOO0OOooo........oo 50 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
51 51
52 ChromosomeParameterisation::ChromosomeParamete << 52 ChromosomeParameterisation::ChromosomeParameterisation(const char* filename):
53 : G4VPVParameterisation() << 53 G4VPVParameterisation()
54 { 54 {
55 ifstream f(filename, ios::in); 55 ifstream f(filename, ios::in);
56 if (!f) return; << 56 if (!f)
>> 57 return;
57 58
58 fPositions.reserve(100); 59 fPositions.reserve(100);
59 fRotations.reserve(100); 60 fRotations.reserve(100);
60 61
61 while (!f.eof()) { << 62 while (!f.eof())
>> 63 {
62 double x, y, z, rot; 64 double x, y, z, rot;
63 f >> x >> y >> z >> rot; 65 f >> x >> y >> z >> rot;
64 fPositions.push_back(new G4ThreeVector(x * << 66 fPositions.push_back(new G4ThreeVector(x * nanometer,
>> 67 y * nanometer,
>> 68 z * nanometer));
65 fRotations.push_back(new G4RotationMatrix( 69 fRotations.push_back(new G4RotationMatrix(0, 0, rot * degree));
66 } 70 }
67 } 71 }
68 72
69 //....oooOO0OOooo........oooOO0OOooo........oo 73 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
70 74
71 ChromosomeParameterisation::~ChromosomeParamet 75 ChromosomeParameterisation::~ChromosomeParameterisation()
72 { 76 {
73 unsigned int i; 77 unsigned int i;
74 for (i = 0; i < fPositions.size(); i++) 78 for (i = 0; i < fPositions.size(); i++)
75 delete fPositions[i]; 79 delete fPositions[i];
76 for (i = 0; i < fRotations.size(); i++) 80 for (i = 0; i < fRotations.size(); i++)
77 delete fRotations[i]; 81 delete fRotations[i];
78 } 82 }
79 83
80 //....oooOO0OOooo........oooOO0OOooo........oo 84 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
81 85
82 void ChromosomeParameterisation::ComputeDimens << 86 void ChromosomeParameterisation::ComputeDimensions(
83 << 87 G4Tubs& /*rosette*/,
84 {} << 88 const G4int /*copyNo*/,
>> 89 const G4VPhysicalVolume* /*physVol*/) const
>> 90 {
>> 91
>> 92 }
85 93
86 //....oooOO0OOooo........oooOO0OOooo........oo 94 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
87 95
88 void ChromosomeParameterisation::ComputeTransf << 96 void ChromosomeParameterisation::ComputeTransformation(
89 << 97 const G4int copyNo, G4VPhysicalVolume* physVol) const
90 { 98 {
91 // see passive vs active method to specify 99 // see passive vs active method to specify
92 // this transformation 100 // this transformation
93 physVol->SetTranslation(*fPositions[copyNo]) 101 physVol->SetTranslation(*fPositions[copyNo]);
94 physVol->SetRotation(fRotations[copyNo]); 102 physVol->SetRotation(fRotations[copyNo]);
95 } 103 }
96 104