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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
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8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
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10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us << 27 // Any report or published results obtained using the Geant4-DNA software
28 // and the DNA geometry given in the Geom_DNA << 28 // and the DNA geometry given in the Geom_DNA example
29 // shall cite the following Geant4-DNA collabo 29 // shall cite the following Geant4-DNA collaboration publications:
30 // [1] NIM B 298 (2013) 47-54 30 // [1] NIM B 298 (2013) 47-54
31 // [2] Med. Phys. 37 (2010) 4692-4708 31 // [2] Med. Phys. 37 (2010) 4692-4708
32 // The Geant4-DNA web site is available at htt 32 // The Geant4-DNA web site is available at http://geant4-dna.org
33 // 33 //
>> 34 // $ID$
34 /// \file ChromosomeParameterisation.cc 35 /// \file ChromosomeParameterisation.cc
35 /// \brief Implementation of the ChromosomePar 36 /// \brief Implementation of the ChromosomeParameterisation class
36 37
37 #include <ChromosomeParameterisation.hh> 38 #include <ChromosomeParameterisation.hh>
38 39
39 // STD 40 // STD
40 #include <fstream> 41 #include <fstream>
41 42
42 // G4 43 // G4
43 #include <CLHEP/Units/SystemOfUnits.h> 44 #include <CLHEP/Units/SystemOfUnits.h>
44 #include <G4VPhysicalVolume.hh> 45 #include <G4VPhysicalVolume.hh>
45 46
46 using namespace std; 47 using namespace std;
47 using CLHEP::degree; <<
48 using CLHEP::nanometer; 48 using CLHEP::nanometer;
>> 49 using CLHEP::degree;
49 50
50 //....oooOO0OOooo........oooOO0OOooo........oo 51 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
51 52
52 ChromosomeParameterisation::ChromosomeParamete << 53 ChromosomeParameterisation::ChromosomeParameterisation(const char* filename):
53 : G4VPVParameterisation() << 54 G4VPVParameterisation()
54 { 55 {
55 ifstream f(filename, ios::in); 56 ifstream f(filename, ios::in);
56 if (!f) return; << 57 if (!f)
>> 58 return;
57 59
58 fPositions.reserve(100); 60 fPositions.reserve(100);
59 fRotations.reserve(100); 61 fRotations.reserve(100);
60 62
61 while (!f.eof()) { << 63 while (!f.eof())
>> 64 {
62 double x, y, z, rot; 65 double x, y, z, rot;
63 f >> x >> y >> z >> rot; 66 f >> x >> y >> z >> rot;
64 fPositions.push_back(new G4ThreeVector(x * << 67 fPositions.push_back(new G4ThreeVector(x * nanometer,
>> 68 y * nanometer,
>> 69 z * nanometer));
65 fRotations.push_back(new G4RotationMatrix( 70 fRotations.push_back(new G4RotationMatrix(0, 0, rot * degree));
66 } 71 }
67 } 72 }
68 73
69 //....oooOO0OOooo........oooOO0OOooo........oo 74 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
70 75
71 ChromosomeParameterisation::~ChromosomeParamet 76 ChromosomeParameterisation::~ChromosomeParameterisation()
72 { 77 {
73 unsigned int i; 78 unsigned int i;
74 for (i = 0; i < fPositions.size(); i++) 79 for (i = 0; i < fPositions.size(); i++)
75 delete fPositions[i]; 80 delete fPositions[i];
76 for (i = 0; i < fRotations.size(); i++) 81 for (i = 0; i < fRotations.size(); i++)
77 delete fRotations[i]; 82 delete fRotations[i];
78 } 83 }
79 84
80 //....oooOO0OOooo........oooOO0OOooo........oo 85 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
81 86
82 void ChromosomeParameterisation::ComputeDimens << 87 void ChromosomeParameterisation::ComputeDimensions(
83 << 88 G4Tubs& /*rosette*/,
84 {} << 89 const G4int /*copyNo*/,
>> 90 const G4VPhysicalVolume* /*physVol*/) const
>> 91 {
>> 92
>> 93 }
85 94
86 //....oooOO0OOooo........oooOO0OOooo........oo 95 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
87 96
88 void ChromosomeParameterisation::ComputeTransf << 97 void ChromosomeParameterisation::ComputeTransformation(
89 << 98 const G4int copyNo, G4VPhysicalVolume* physVol) const
90 { 99 {
91 // see passive vs active method to specify 100 // see passive vs active method to specify
92 // this transformation 101 // this transformation
93 physVol->SetTranslation(*fPositions[copyNo]) 102 physVol->SetTranslation(*fPositions[copyNo]);
94 physVol->SetRotation(fRotations[copyNo]); 103 physVol->SetRotation(fRotations[copyNo]);
95 } 104 }
96 105