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Geant4/examples/extended/medical/dna/pdb4dna/src/PDBresidue.cc

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

Diff markup

Differences between /examples/extended/medical/dna/pdb4dna/src/PDBresidue.cc (Version 11.3.0) and /examples/extended/medical/dna/pdb4dna/src/PDBresidue.cc (Version 4.1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 37 (2010) 4692-4708                 
 30 // Delage et al. PDB4DNA: implementation of DN    
 31 //                  Bank (PDB) description for    
 32 //                  simulations (submitted to     
 33 // The Geant4-DNA web site is available at htt    
 34 //                                                
 35 //                                                
 36 /// \file PDBresidue.cc                           
 37 /// \brief Implementation of the PDBresidue cl    
 38                                                   
 39 #include "PDBresidue.hh"                          
 40                                                   
 41 //....oooOO0OOooo........oooOO0OOooo........oo    
 42                                                   
 43 Residue::Residue()                                
 44   : fResName(""),                                 
 45     fResSeq(0),                                   
 46     fVisible(false),                              
 47     fSelected(false),                             
 48     fCenterX(0),                                  
 49     fCenterY(0),                                  
 50     fCenterZ(0),                                  
 51     fNbAtom(0),                                   
 52     fpNext(0),                                    
 53     fpFirst(0)                                    
 54 {}                                                
 55                                                   
 56 //....oooOO0OOooo........oooOO0OOooo........oo    
 57                                                   
 58 Residue::Residue(const std::string& rN, int rS    
 59 {                                                 
 60   fResName = rN;  // Residue name                 
 61   fResSeq = rS;  // Residue sequence number       
 62   fVisible = false;                               
 63   fSelected = false;                              
 64   fCenterX = 0;                                   
 65   fCenterY = 0;                                   
 66   fCenterZ = 0;                                   
 67   fNbAtom = 0;                                    
 68   fpNext = 0;                                     
 69   fpFirst = 0;                                    
 70 }                                                 
 71                                                   
 72 //....oooOO0OOooo........oooOO0OOooo........oo    
 73                                                   
 74 Residue* Residue::GetNext()                       
 75 {                                                 
 76   return fpNext;                                  
 77 }                                                 
 78                                                   
 79 //....oooOO0OOooo........oooOO0OOooo........oo    
 80                                                   
 81 Atom* Residue::GetFirst()                         
 82 {                                                 
 83   return fpFirst;                                 
 84 }                                                 
 85                                                   
 86 //....oooOO0OOooo........oooOO0OOooo........oo    
 87                                                   
 88 int Residue::GetID()                              
 89 {                                                 
 90   return fResSeq;                                 
 91 }                                                 
 92                                                   
 93 //....oooOO0OOooo........oooOO0OOooo........oo    
 94                                                   
 95 void Residue::SetNext(Residue* residueNext)       
 96 {                                                 
 97   fpNext = residueNext;                           
 98 }                                                 
 99                                                   
100 //....oooOO0OOooo........oooOO0OOooo........oo    
101                                                   
102 void Residue::SetFirst(Atom* atomFirst)           
103 {                                                 
104   fpFirst = atomFirst;                            
105 }                                                 
106