Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/extended/medical/dna/pdb4dna/src/PDBatom.cc

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

Diff markup

Differences between /examples/extended/medical/dna/pdb4dna/src/PDBatom.cc (Version 11.3.0) and /examples/extended/medical/dna/pdb4dna/src/PDBatom.cc (Version 5.1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 37 (2010) 4692-4708                 
 30 // Delage et al. PDB4DNA: implementation of DN    
 31 //                  Bank (PDB) description for    
 32 //                  simulations (submitted to     
 33 // The Geant4-DNA web site is available at htt    
 34 //                                                
 35 //                                                
 36 /// \file PDBatom.cc                              
 37 /// \brief Implementation of the PDBatom class    
 38                                                   
 39 #include "PDBatom.hh"                             
 40                                                   
 41 //....oooOO0OOooo........oooOO0OOooo........oo    
 42                                                   
 43 Atom::Atom(int s, const std::string& n, const     
 44            double yInit, double zInit, double     
 45 {                                                 
 46   fSerial = s;                                    
 47   fName = n;  //!< Atom name                      
 48   fResName = rN;  //!< Residue name               
 49   fNumInRes = numInRes;                           
 50   fResSeq = rS;  //!< Residue sequence number     
 51   fX = xInit;                                     
 52   fY = yInit;                                     
 53   fZ = zInit;                                     
 54   fVdwRadius = radius;                            
 55   fOccupancy = o;  //!< occupancy                 
 56   fTempFactor = tF;                               
 57   fElement = e;                                   
 58   fpNext = 0;                                     
 59 }                                                 
 60                                                   
 61 //....oooOO0OOooo........oooOO0OOooo........oo    
 62                                                   
 63 Atom* Atom::GetNext()                             
 64 {                                                 
 65   return fpNext;                                  
 66 }                                                 
 67                                                   
 68 //....oooOO0OOooo........oooOO0OOooo........oo    
 69                                                   
 70 double Atom::GetX()                               
 71 {                                                 
 72   return fX;                                      
 73 }                                                 
 74                                                   
 75 //....oooOO0OOooo........oooOO0OOooo........oo    
 76                                                   
 77 double Atom::GetY()                               
 78 {                                                 
 79   return fY;                                      
 80 }                                                 
 81                                                   
 82 //....oooOO0OOooo........oooOO0OOooo........oo    
 83                                                   
 84 double Atom::GetZ()                               
 85 {                                                 
 86   return fZ;                                      
 87 }                                                 
 88                                                   
 89 //....oooOO0OOooo........oooOO0OOooo........oo    
 90                                                   
 91 int Atom::GetID()                                 
 92 {                                                 
 93   return fSerial;                                 
 94 }                                                 
 95                                                   
 96 //....oooOO0OOooo........oooOO0OOooo........oo    
 97                                                   
 98 const std::string& Atom::GetName()                
 99 {                                                 
100   return fName;                                   
101 }                                                 
102                                                   
103 //....oooOO0OOooo........oooOO0OOooo........oo    
104                                                   
105 const std::string& Atom::GetElementName()         
106 {                                                 
107   return fElement;                                
108 }                                                 
109                                                   
110 //....oooOO0OOooo........oooOO0OOooo........oo    
111                                                   
112 double Atom::GetVanDerWaalsRadius()               
113 {                                                 
114   return fVdwRadius;                              
115 }                                                 
116                                                   
117 //....oooOO0OOooo........oooOO0OOooo........oo    
118                                                   
119 void Atom::SetNext(Atom* AtomNext)                
120 {                                                 
121   fpNext = AtomNext;                              
122 }                                                 
123