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Geant4/examples/extended/medical/dna/neuron/src/SteppingAction.cc

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Diff markup

Differences between /examples/extended/medical/dna/neuron/src/SteppingAction.cc (Version 11.3.0) and /examples/extended/medical/dna/neuron/src/SteppingAction.cc (Version 9.5.p2)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 37 (2010) 4692-4708                 
 30 // and papers                                     
 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8     
 32 // O. Belov et al. Physica Medica 32 (2016) 15    
 33 // The Geant4-DNA web site is available at htt    
 34 //                                                
 35 // -------------------------------------------    
 36 // November 2016                                  
 37 // -------------------------------------------    
 38 //                                                
 39 /// \file SteppingAction.cc                       
 40 /// \brief Implementation of the SteppingActio    
 41                                                   
 42 #include "SteppingAction.hh"                      
 43                                                   
 44 #include "PrimaryGeneratorAction.hh"              
 45 #include "Run.hh"                                 
 46 #include "RunAction.hh"                           
 47                                                   
 48 #include "G4AnalysisManager.hh"                   
 49 #include "G4LogicalVolume.hh"                     
 50 #include "G4LogicalVolumeStore.hh"                
 51 #include "G4PhysicalVolumeStore.hh"               
 52 #include "G4RunManager.hh"                        
 53 #include "G4SteppingManager.hh"                   
 54 #include "G4SystemOfUnits.hh"                     
 55 #include "G4VPhysicalVolume.hh"                   
 56 #include "G4VTouchable.hh"                        
 57 #include "G4ios.hh"                               
 58                                                   
 59 //....oooOO0OOooo........oooOO0OOooo........oo    
 60                                                   
 61 SteppingAction::SteppingAction(RunAction* run)    
 62                                                   
 63 //....oooOO0OOooo........oooOO0OOooo........oo    
 64                                                   
 65 void SteppingAction::UserSteppingAction(const     
 66 {                                                 
 67   if (step->GetPostStepPoint()->GetProcessDefi    
 68     G4double edepStep = step->GetTotalEnergyDe    
 69     G4VPhysicalVolume* volumeStep = step->GetP    
 70     G4TouchableHandle touchStep = step->GetPre    
 71     G4VPhysicalVolume* volumeMedium = G4Physic    
 72     G4VPhysicalVolume* volumeSlice =              
 73       G4PhysicalVolumeStore::GetInstance()->Ge    
 74                                                   
 75     // count processes                            
 76     //                                            
 77     const G4StepPoint* endPoint = step->GetPos    
 78     const G4VProcess* process = endPoint->GetP    
 79     Run* run = static_cast<Run*>(G4RunManager:    
 80     run->CountProcesses(process);                 
 81                                                   
 82     // Edep in all volume                         
 83     if (edepStep > 0.) {                          
 84       fRunAction->AddEdepALL(edepStep);           
 85                                                   
 86       // Edep in a target volume (Bounding sli    
 87       if (volumeStep == volumeSlice) {            
 88         fRunAction->AddEdepSlice(edepStep);       
 89       }                                           
 90                                                   
 91       // Edep in Soma                             
 92       if (volumeStep->GetName() == "Soma") {      
 93         fRunAction->AddEdepSoma(edepStep);        
 94         run->AddSomaCompart(touchStep->GetCopy    
 95       }                                           
 96                                                   
 97       // Edep in Dendrites                        
 98       if (volumeStep->GetName() == "Dendrites"    
 99         fRunAction->AddEdepDend(edepStep);        
100         run->AddDendCompart(touchStep->GetCopy    
101       }                                           
102                                                   
103       // Edep in Axon                             
104       if (volumeStep->GetName() == "Axon") {      
105         fRunAction->AddEdepAxon(edepStep);        
106         run->AddAxonCompart(touchStep->GetCopy    
107       }                                           
108                                                   
109       // Edep in whole Neuron                     
110       if (volumeStep != volumeMedium && volume    
111         fRunAction->AddEdepNeuron(edepStep);      
112       }                                           
113                                                   
114       // Edep outside bounding scice              
115       if (volumeStep == volumeMedium) {           
116         fRunAction->AddEdepMedium(edepStep);      
117       }                                           
118     }  // end edep>0                              
119   }                                               
120 }                                                 
121