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25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // and papers 30 // and papers
31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
32 // O. Belov et al. Physica Medica 32 (2016) 15 32 // O. Belov et al. Physica Medica 32 (2016) 1510-1520
33 // The Geant4-DNA web site is available at htt 33 // The Geant4-DNA web site is available at http://geant4-dna.org
34 // << 34 //
35 // ------------------------------------------- 35 // -------------------------------------------------------------------
36 // November 2016 36 // November 2016
37 // ------------------------------------------- 37 // -------------------------------------------------------------------
38 // 38 //
39 /// \file SteppingAction.cc << 39 /// \file SteppingAction.cc
40 /// \brief Implementation of the SteppingActio 40 /// \brief Implementation of the SteppingAction class
41 41
42 #include "SteppingAction.hh" 42 #include "SteppingAction.hh"
43 <<
44 #include "PrimaryGeneratorAction.hh" <<
45 #include "Run.hh" <<
46 #include "RunAction.hh" 43 #include "RunAction.hh"
47 << 44 #include "PrimaryGeneratorAction.hh"
48 #include "G4AnalysisManager.hh" 45 #include "G4AnalysisManager.hh"
>> 46 #include "G4SystemOfUnits.hh"
>> 47 #include "G4SteppingManager.hh"
>> 48 #include "G4VTouchable.hh"
>> 49 #include "G4ios.hh"
49 #include "G4LogicalVolume.hh" 50 #include "G4LogicalVolume.hh"
50 #include "G4LogicalVolumeStore.hh" 51 #include "G4LogicalVolumeStore.hh"
>> 52 #include "G4VPhysicalVolume.hh"
51 #include "G4PhysicalVolumeStore.hh" 53 #include "G4PhysicalVolumeStore.hh"
>> 54 #include "Run.hh"
52 #include "G4RunManager.hh" 55 #include "G4RunManager.hh"
53 #include "G4SteppingManager.hh" <<
54 #include "G4SystemOfUnits.hh" <<
55 #include "G4VPhysicalVolume.hh" <<
56 #include "G4VTouchable.hh" <<
57 #include "G4ios.hh" <<
58 56
59 //....oooOO0OOooo........oooOO0OOooo........oo 57 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
60 58
61 SteppingAction::SteppingAction(RunAction* run) << 59 SteppingAction::SteppingAction(RunAction* run)
>> 60 : G4UserSteppingAction(), fRunAction(run)
>> 61 {}
62 62
63 //....oooOO0OOooo........oooOO0OOooo........oo 63 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
64 64
65 void SteppingAction::UserSteppingAction(const 65 void SteppingAction::UserSteppingAction(const G4Step* step)
66 { << 66 {
67 if (step->GetPostStepPoint()->GetProcessDefi << 67 if (step->GetPostStepPoint()->GetProcessDefinedStep()->
68 G4double edepStep = step->GetTotalEnergyDe << 68 GetProcessName()!="Transportation") {
>> 69 G4double edepStep = step->GetTotalEnergyDeposit() ;
69 G4VPhysicalVolume* volumeStep = step->GetP 70 G4VPhysicalVolume* volumeStep = step->GetPreStepPoint()->GetPhysicalVolume();
70 G4TouchableHandle touchStep = step->GetPre 71 G4TouchableHandle touchStep = step->GetPreStepPoint()->GetTouchableHandle();
71 G4VPhysicalVolume* volumeMedium = G4Physic 72 G4VPhysicalVolume* volumeMedium = G4PhysicalVolumeStore::GetInstance()->GetVolume("Medium");
72 G4VPhysicalVolume* volumeSlice = << 73 G4VPhysicalVolume* volumeSlice = G4PhysicalVolumeStore::GetInstance()->GetVolume("BoundingSlice");
73 G4PhysicalVolumeStore::GetInstance()->Ge << 74
74 <<
75 // count processes 75 // count processes
76 // << 76 //
77 const G4StepPoint* endPoint = step->GetPos 77 const G4StepPoint* endPoint = step->GetPostStepPoint();
78 const G4VProcess* process = endPoint->GetP << 78 const G4VProcess* process = endPoint->GetProcessDefinedStep();
79 Run* run = static_cast<Run*>(G4RunManager: 79 Run* run = static_cast<Run*>(G4RunManager::GetRunManager()->GetNonConstCurrentRun());
80 run->CountProcesses(process); 80 run->CountProcesses(process);
81 81
82 // Edep in all volume 82 // Edep in all volume
83 if (edepStep > 0.) { << 83 if (edepStep > 0. ) {
84 fRunAction->AddEdepALL(edepStep); 84 fRunAction->AddEdepALL(edepStep);
85 85
86 // Edep in a target volume (Bounding sli 86 // Edep in a target volume (Bounding slice)
87 if (volumeStep == volumeSlice) { 87 if (volumeStep == volumeSlice) {
88 fRunAction->AddEdepSlice(edepStep); << 88 fRunAction->AddEdepSlice(edepStep);
89 } 89 }
90 90
91 // Edep in Soma 91 // Edep in Soma
92 if (volumeStep->GetName() == "Soma") { 92 if (volumeStep->GetName() == "Soma") {
93 fRunAction->AddEdepSoma(edepStep); << 93 fRunAction->AddEdepSoma(edepStep);
94 run->AddSomaCompart(touchStep->GetCopy << 94 run->AddSomaCompart(touchStep->GetCopyNumber(), edepStep);
95 } 95 }
96 96
97 // Edep in Dendrites 97 // Edep in Dendrites
98 if (volumeStep->GetName() == "Dendrites" 98 if (volumeStep->GetName() == "Dendrites") {
99 fRunAction->AddEdepDend(edepStep); << 99 fRunAction->AddEdepDend(edepStep);
100 run->AddDendCompart(touchStep->GetCopy << 100 run->AddDendCompart(touchStep->GetCopyNumber(), edepStep);
101 } 101 }
102 102
103 // Edep in Axon 103 // Edep in Axon
104 if (volumeStep->GetName() == "Axon") { 104 if (volumeStep->GetName() == "Axon") {
105 fRunAction->AddEdepAxon(edepStep); << 105 fRunAction->AddEdepAxon(edepStep);
106 run->AddAxonCompart(touchStep->GetCopy << 106 run->AddAxonCompart(touchStep->GetCopyNumber(), edepStep);
107 } 107 }
108 << 108
109 // Edep in whole Neuron 109 // Edep in whole Neuron
110 if (volumeStep != volumeMedium && volume 110 if (volumeStep != volumeMedium && volumeStep != volumeSlice) {
111 fRunAction->AddEdepNeuron(edepStep); << 111 fRunAction->AddEdepNeuron(edepStep);
112 } 112 }
113 113
114 // Edep outside bounding scice 114 // Edep outside bounding scice
115 if (volumeStep == volumeMedium) { 115 if (volumeStep == volumeMedium) {
116 fRunAction->AddEdepMedium(edepStep); << 116 fRunAction->AddEdepMedium(edepStep);
117 } 117 }
118 } // end edep>0 << 118 } // end edep>0
119 } 119 }
120 } << 120 }
121 121