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19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
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25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // and papers 30 // and papers
31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
32 // O. Belov et al. Physica Medica 32 (2016) 15 32 // O. Belov et al. Physica Medica 32 (2016) 1510-1520
33 // The Geant4-DNA web site is available at htt 33 // The Geant4-DNA web site is available at http://geant4-dna.org
34 // << 34 //
35 // ------------------------------------------- 35 // -------------------------------------------------------------------
36 // November 2016 36 // November 2016
37 // ------------------------------------------- 37 // -------------------------------------------------------------------
38 // 38 //
39 /// \file SteppingAction.cc << 39 /// \file SteppingAction.cc
40 /// \brief Implementation of the SteppingActio 40 /// \brief Implementation of the SteppingAction class
41 41
42 #include "SteppingAction.hh" 42 #include "SteppingAction.hh"
43 <<
44 #include "PrimaryGeneratorAction.hh" <<
45 #include "Run.hh" <<
46 #include "RunAction.hh" 43 #include "RunAction.hh"
47 << 44 #include "PrimaryGeneratorAction.hh"
48 #include "G4AnalysisManager.hh" 45 #include "G4AnalysisManager.hh"
>> 46 #include "G4SystemOfUnits.hh"
>> 47 #include "G4SteppingManager.hh"
>> 48 #include "G4VTouchable.hh"
>> 49 //
>> 50 //#include "NeuronLoadDataFile.hh"
>> 51 #include "G4ios.hh"
49 #include "G4LogicalVolume.hh" 52 #include "G4LogicalVolume.hh"
50 #include "G4LogicalVolumeStore.hh" 53 #include "G4LogicalVolumeStore.hh"
>> 54 #include "G4VPhysicalVolume.hh"
51 #include "G4PhysicalVolumeStore.hh" 55 #include "G4PhysicalVolumeStore.hh"
>> 56 #include "Run.hh"
52 #include "G4RunManager.hh" 57 #include "G4RunManager.hh"
53 #include "G4SteppingManager.hh" <<
54 #include "G4SystemOfUnits.hh" <<
55 #include "G4VPhysicalVolume.hh" <<
56 #include "G4VTouchable.hh" <<
57 #include "G4ios.hh" <<
58 58
59 //....oooOO0OOooo........oooOO0OOooo........oo 59 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
60 60
61 SteppingAction::SteppingAction(RunAction* run) << 61 SteppingAction::SteppingAction(RunAction* run)
>> 62 : G4UserSteppingAction(), fRunAction(run)
>> 63 {
>> 64 //fNeuronLoadParamz = new NeuronLoadDataFile();
>> 65 //fpNeuronHits = new NeuronHitCompartments();
>> 66 }
62 67
63 //....oooOO0OOooo........oooOO0OOooo........oo 68 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
64 69
65 void SteppingAction::UserSteppingAction(const << 70 SteppingAction::~SteppingAction()
66 { 71 {
67 if (step->GetPostStepPoint()->GetProcessDefi <<
68 G4double edepStep = step->GetTotalEnergyDe <<
69 G4VPhysicalVolume* volumeStep = step->GetP <<
70 G4TouchableHandle touchStep = step->GetPre <<
71 G4VPhysicalVolume* volumeMedium = G4Physic <<
72 G4VPhysicalVolume* volumeSlice = <<
73 G4PhysicalVolumeStore::GetInstance()->Ge <<
74 <<
75 // count processes <<
76 // <<
77 const G4StepPoint* endPoint = step->GetPos <<
78 const G4VProcess* process = endPoint->GetP <<
79 Run* run = static_cast<Run*>(G4RunManager: <<
80 run->CountProcesses(process); <<
81 <<
82 // Edep in all volume <<
83 if (edepStep > 0.) { <<
84 fRunAction->AddEdepALL(edepStep); <<
85 <<
86 // Edep in a target volume (Bounding sli <<
87 if (volumeStep == volumeSlice) { <<
88 fRunAction->AddEdepSlice(edepStep); <<
89 } <<
90 <<
91 // Edep in Soma <<
92 if (volumeStep->GetName() == "Soma") { <<
93 fRunAction->AddEdepSoma(edepStep); <<
94 run->AddSomaCompart(touchStep->GetCopy <<
95 } <<
96 <<
97 // Edep in Dendrites <<
98 if (volumeStep->GetName() == "Dendrites" <<
99 fRunAction->AddEdepDend(edepStep); <<
100 run->AddDendCompart(touchStep->GetCopy <<
101 } <<
102 <<
103 // Edep in Axon <<
104 if (volumeStep->GetName() == "Axon") { <<
105 fRunAction->AddEdepAxon(edepStep); <<
106 run->AddAxonCompart(touchStep->GetCopy <<
107 } <<
108 <<
109 // Edep in whole Neuron <<
110 if (volumeStep != volumeMedium && volume <<
111 fRunAction->AddEdepNeuron(edepStep); <<
112 } <<
113 <<
114 // Edep outside bounding scice <<
115 if (volumeStep == volumeMedium) { <<
116 fRunAction->AddEdepMedium(edepStep); <<
117 } <<
118 } // end edep>0 <<
119 } <<
120 } 72 }
>> 73
>> 74 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
>> 75
>> 76 void SteppingAction::UserSteppingAction(const G4Step* step)
>> 77 {
>> 78
>> 79 if (step->GetPostStepPoint()->GetProcessDefinedStep()->
>> 80 GetProcessName()!="Transportation")
>> 81 {
>> 82 G4double edepStep = step->GetTotalEnergyDeposit() ;
>> 83 G4VPhysicalVolume* volumeStep = step->GetPreStepPoint()->
>> 84 GetPhysicalVolume();
>> 85 G4TouchableHandle touchStep = step->GetPreStepPoint()->GetTouchableHandle();
>> 86 G4VPhysicalVolume* volumeMedium = G4PhysicalVolumeStore::GetInstance()
>> 87 ->GetVolume("Medium");
>> 88 G4VPhysicalVolume* volumeSlice = G4PhysicalVolumeStore::GetInstance()
>> 89 ->GetVolume("BoundingSlice");
>> 90
>> 91 // count processes
>> 92 //
>> 93 const G4StepPoint* endPoint = step->GetPostStepPoint();
>> 94 const G4VProcess* process = endPoint->GetProcessDefinedStep();
>> 95 Run* run = static_cast<Run*>(
>> 96 G4RunManager::GetRunManager()->GetNonConstCurrentRun());
>> 97 run->CountProcesses(process);
>> 98
>> 99 // Edep in all volume
>> 100 if (edepStep > 0. )
>> 101 {
>> 102 fRunAction->AddEdepALL(edepStep);
>> 103 //fpNeuronHits->RegisterEdep(volumeStep, edepStep);
>> 104
>> 105 // Edep in a target volume (Bounding slice)
>> 106 if (volumeStep == volumeSlice)
>> 107 {
>> 108 fRunAction->AddEdepSlice(edepStep);
>> 109
>> 110 }
>> 111
>> 112 // Edep in Soma
>> 113 if (volumeStep->GetName() == "Soma")
>> 114 {
>> 115 fRunAction->AddEdepSoma(edepStep);
>> 116 // fRunAction->AddSomaCompart(touchStep->GetCopyNumber(), edepStep);
>> 117 run->AddSomaCompart(touchStep->GetCopyNumber(), edepStep);
>> 118 }
>> 119
>> 120 // Edep in Dendrites
>> 121 if (volumeStep->GetName() == "Dendrites")
>> 122 {
>> 123 fRunAction->AddEdepDend(edepStep);
>> 124 run->AddDendCompart(touchStep->GetCopyNumber(), edepStep);
>> 125 }
>> 126
>> 127 // Edep in Axon
>> 128 if (volumeStep->GetName() == "Axon")
>> 129 {
>> 130 fRunAction->AddEdepAxon(edepStep);
>> 131 run->AddAxonCompart(touchStep->GetCopyNumber(), edepStep);
>> 132 }
>> 133
>> 134 // Edep in whole Neuron
>> 135 if (volumeStep != volumeMedium && volumeStep != volumeSlice)
>> 136 {
>> 137 fRunAction->AddEdepNeuron(edepStep);
>> 138 }
>> 139
>> 140 // Edep outside bounding scice
>> 141 if (volumeStep == volumeMedium)
>> 142 {
>> 143 fRunAction->AddEdepMedium(edepStep);
>> 144 }
>> 145
>> 146 } // end edep>0
>> 147 }
>> 148
>> 149 }
121 150