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25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // and papers 30 // and papers
31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
32 // O. Belov et al. Physica Medica 32 (2016) 15 32 // O. Belov et al. Physica Medica 32 (2016) 1510-1520
33 // The Geant4-DNA web site is available at htt 33 // The Geant4-DNA web site is available at http://geant4-dna.org
34 // << 34 //
35 // ------------------------------------------- 35 // -------------------------------------------------------------------
36 // November 2016 36 // November 2016
37 // ------------------------------------------- 37 // -------------------------------------------------------------------
38 // 38 //
39 /// \file SteppingAction.cc << 39 // $ID$
>> 40 /// \file SteppingAction.cc
40 /// \brief Implementation of the SteppingActio 41 /// \brief Implementation of the SteppingAction class
41 42
>> 43 #include "Analysis.hh"
42 #include "SteppingAction.hh" 44 #include "SteppingAction.hh"
43 <<
44 #include "PrimaryGeneratorAction.hh" <<
45 #include "Run.hh" <<
46 #include "RunAction.hh" 45 #include "RunAction.hh"
47 << 46 #include "PrimaryGeneratorAction.hh"
48 #include "G4AnalysisManager.hh" << 47 #include "G4SystemOfUnits.hh"
>> 48 #include "G4SteppingManager.hh"
>> 49 #include "G4VTouchable.hh"
>> 50 //
>> 51 //#include "NeuronLoadDataFile.hh"
>> 52 #include "G4ios.hh"
49 #include "G4LogicalVolume.hh" 53 #include "G4LogicalVolume.hh"
50 #include "G4LogicalVolumeStore.hh" 54 #include "G4LogicalVolumeStore.hh"
>> 55 #include "G4VPhysicalVolume.hh"
51 #include "G4PhysicalVolumeStore.hh" 56 #include "G4PhysicalVolumeStore.hh"
>> 57 #include "Run.hh"
52 #include "G4RunManager.hh" 58 #include "G4RunManager.hh"
53 #include "G4SteppingManager.hh" <<
54 #include "G4SystemOfUnits.hh" <<
55 #include "G4VPhysicalVolume.hh" <<
56 #include "G4VTouchable.hh" <<
57 #include "G4ios.hh" <<
58 59
59 //....oooOO0OOooo........oooOO0OOooo........oo 60 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
60 61
61 SteppingAction::SteppingAction(RunAction* run) << 62 SteppingAction::SteppingAction(RunAction* run)
>> 63 : G4UserSteppingAction(), fRunAction(run)
>> 64 {
>> 65 //fNeuronLoadParamz = new NeuronLoadDataFile();
>> 66 //fpNeuronHits = new NeuronHitCompartments();
>> 67 }
62 68
63 //....oooOO0OOooo........oooOO0OOooo........oo 69 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
64 70
65 void SteppingAction::UserSteppingAction(const << 71 SteppingAction::~SteppingAction()
66 { 72 {
67 if (step->GetPostStepPoint()->GetProcessDefi <<
68 G4double edepStep = step->GetTotalEnergyDe <<
69 G4VPhysicalVolume* volumeStep = step->GetP <<
70 G4TouchableHandle touchStep = step->GetPre <<
71 G4VPhysicalVolume* volumeMedium = G4Physic <<
72 G4VPhysicalVolume* volumeSlice = <<
73 G4PhysicalVolumeStore::GetInstance()->Ge <<
74 <<
75 // count processes <<
76 // <<
77 const G4StepPoint* endPoint = step->GetPos <<
78 const G4VProcess* process = endPoint->GetP <<
79 Run* run = static_cast<Run*>(G4RunManager: <<
80 run->CountProcesses(process); <<
81 <<
82 // Edep in all volume <<
83 if (edepStep > 0.) { <<
84 fRunAction->AddEdepALL(edepStep); <<
85 <<
86 // Edep in a target volume (Bounding sli <<
87 if (volumeStep == volumeSlice) { <<
88 fRunAction->AddEdepSlice(edepStep); <<
89 } <<
90 <<
91 // Edep in Soma <<
92 if (volumeStep->GetName() == "Soma") { <<
93 fRunAction->AddEdepSoma(edepStep); <<
94 run->AddSomaCompart(touchStep->GetCopy <<
95 } <<
96 <<
97 // Edep in Dendrites <<
98 if (volumeStep->GetName() == "Dendrites" <<
99 fRunAction->AddEdepDend(edepStep); <<
100 run->AddDendCompart(touchStep->GetCopy <<
101 } <<
102 <<
103 // Edep in Axon <<
104 if (volumeStep->GetName() == "Axon") { <<
105 fRunAction->AddEdepAxon(edepStep); <<
106 run->AddAxonCompart(touchStep->GetCopy <<
107 } <<
108 <<
109 // Edep in whole Neuron <<
110 if (volumeStep != volumeMedium && volume <<
111 fRunAction->AddEdepNeuron(edepStep); <<
112 } <<
113 <<
114 // Edep outside bounding scice <<
115 if (volumeStep == volumeMedium) { <<
116 fRunAction->AddEdepMedium(edepStep); <<
117 } <<
118 } // end edep>0 <<
119 } <<
120 } 73 }
>> 74
>> 75 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
>> 76
>> 77 void SteppingAction::UserSteppingAction(const G4Step* step)
>> 78 {
>> 79
>> 80 if (step->GetPostStepPoint()->GetProcessDefinedStep()->
>> 81 GetProcessName()!="Transportation")
>> 82 {
>> 83 G4double edepStep = step->GetTotalEnergyDeposit() ;
>> 84 G4VPhysicalVolume* volumeStep = step->GetPreStepPoint()->
>> 85 GetPhysicalVolume();
>> 86 G4TouchableHandle touchStep = step->GetPreStepPoint()->GetTouchableHandle();
>> 87 G4VPhysicalVolume* volumeMedium = G4PhysicalVolumeStore::GetInstance()
>> 88 ->GetVolume("Medium");
>> 89 G4VPhysicalVolume* volumeSlice = G4PhysicalVolumeStore::GetInstance()
>> 90 ->GetVolume("BoundingSlice");
>> 91
>> 92 // count processes
>> 93 //
>> 94 const G4StepPoint* endPoint = step->GetPostStepPoint();
>> 95 const G4VProcess* process = endPoint->GetProcessDefinedStep();
>> 96 Run* run = static_cast<Run*>(
>> 97 G4RunManager::GetRunManager()->GetNonConstCurrentRun());
>> 98 run->CountProcesses(process);
>> 99
>> 100 // Edep in all volume
>> 101 if (edepStep > 0. )
>> 102 {
>> 103 fRunAction->AddEdepALL(edepStep);
>> 104 //fpNeuronHits->RegisterEdep(volumeStep, edepStep);
>> 105
>> 106 // Edep in a target volume (Bounding slice)
>> 107 if (volumeStep == volumeSlice)
>> 108 {
>> 109 fRunAction->AddEdepSlice(edepStep);
>> 110
>> 111 }
>> 112
>> 113 // Edep in Soma
>> 114 if (volumeStep->GetName() == "Soma")
>> 115 {
>> 116 fRunAction->AddEdepSoma(edepStep);
>> 117 // fRunAction->AddSomaCompart(touchStep->GetCopyNumber(), edepStep);
>> 118 run->AddSomaCompart(touchStep->GetCopyNumber(), edepStep);
>> 119 }
>> 120
>> 121 // Edep in Dendrites
>> 122 if (volumeStep->GetName() == "Dendrites")
>> 123 {
>> 124 fRunAction->AddEdepDend(edepStep);
>> 125 run->AddDendCompart(touchStep->GetCopyNumber(), edepStep);
>> 126 }
>> 127
>> 128 // Edep in Axon
>> 129 if (volumeStep->GetName() == "Axon")
>> 130 {
>> 131 fRunAction->AddEdepAxon(edepStep);
>> 132 run->AddAxonCompart(touchStep->GetCopyNumber(), edepStep);
>> 133 }
>> 134
>> 135 // Edep in whole Neuron
>> 136 if (volumeStep != volumeMedium && volumeStep != volumeSlice)
>> 137 {
>> 138 fRunAction->AddEdepNeuron(edepStep);
>> 139 }
>> 140
>> 141 // Edep outside bounding scice
>> 142 if (volumeStep == volumeMedium)
>> 143 {
>> 144 fRunAction->AddEdepMedium(edepStep);
>> 145 }
>> 146
>> 147 } // end edep>0
>> 148 }
>> 149
>> 150 }
121 151