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Geant4/examples/extended/medical/dna/neuron/src/EventAction.cc

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Diff markup

Differences between /examples/extended/medical/dna/neuron/src/EventAction.cc (Version 11.3.0) and /examples/extended/medical/dna/neuron/src/EventAction.cc (Version 11.1)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // This example is provided by the Geant4-DNA      26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained us     27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collabo     28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708                  29 // Med. Phys. 37 (2010) 4692-4708
 30 // and papers                                      30 // and papers
 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8      31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
 32 // O. Belov et al. Physica Medica 32 (2016) 15     32 // O. Belov et al. Physica Medica 32 (2016) 1510-1520
 33 // The Geant4-DNA web site is available at htt     33 // The Geant4-DNA web site is available at http://geant4-dna.org
 34 //                                             <<  34 // 
 35 // -------------------------------------------     35 // -------------------------------------------------------------------
 36 // November 2016                                   36 // November 2016
 37 // -------------------------------------------     37 // -------------------------------------------------------------------
 38 //                                                 38 //
 39 //                                                 39 //
 40 /// \file EventAction.cc                           40 /// \file EventAction.cc
 41 /// \brief Implementation of the EventAction c     41 /// \brief Implementation of the EventAction class
 42                                                    42 
                                                   >>  43 #include "G4Event.hh"
                                                   >>  44 #include "Randomize.hh"
 43 #include "EventAction.hh"                          45 #include "EventAction.hh"
 44                                                << 
 45 #include "Run.hh"                              << 
 46 #include "RunAction.hh"                            46 #include "RunAction.hh"
                                                   >>  47 #include "G4SystemOfUnits.hh"
                                                   >>  48 #include "G4ios.hh"
 47                                                    49 
 48 #include "G4AnalysisManager.hh"                    50 #include "G4AnalysisManager.hh"
 49 #include "G4Event.hh"                          <<  51 #include "Run.hh"
 50 #include "G4RunManager.hh"                         52 #include "G4RunManager.hh"
 51 #include "G4SystemOfUnits.hh"                  <<  53 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 52 #include "G4ios.hh"                            <<  54 
 53 #include "Randomize.hh"                        <<  55 EventAction::EventAction(RunAction* run)
                                                   >>  56 :fRunAction(run)
                                                   >>  57 {
                                                   >>  58  remove ("OutputPerEvent.out");
                                                   >>  59 }
 54                                                    60 
 55 //....oooOO0OOooo........oooOO0OOooo........oo     61 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 56                                                    62 
 57 EventAction::EventAction(RunAction* run) : fRu <<  63 EventAction::~EventAction()
 58 {                                                  64 {
 59   remove("OutputPerEvent.out");                <<  65  
 60 }                                                  66 }
 61                                                    67 
 62 //....oooOO0OOooo........oooOO0OOooo........oo     68 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 63                                                    69 
 64 void EventAction::BeginOfEventAction(const G4E     70 void EventAction::BeginOfEventAction(const G4Event* evt)
 65 {                                              <<  71 {  
 66   G4int evtNb = evt->GetEventID();                 72   G4int evtNb = evt->GetEventID();
 67   fRunAction->SetNumEvent(evtNb);                  73   fRunAction->SetNumEvent(evtNb);
 68   //                                           <<  74   // 
 69   fRunAction->SetEdepALL(0);                       75   fRunAction->SetEdepALL(0);
 70   fRunAction->SetEdepMedium(0);                    76   fRunAction->SetEdepMedium(0);
 71   fRunAction->SetEdepSlice(0);                     77   fRunAction->SetEdepSlice(0);
 72   fRunAction->SetEdepNeuron(0);                    78   fRunAction->SetEdepNeuron(0);
 73   fRunAction->SetEdepSoma(0);                      79   fRunAction->SetEdepSoma(0);
 74   fRunAction->SetEdepDend(0);                      80   fRunAction->SetEdepDend(0);
 75   fRunAction->SetEdepAxon(0);                  <<  81   fRunAction->SetEdepAxon(0);  
 76 }                                                  82 }
 77                                                    83 
 78 //....oooOO0OOooo........oooOO0OOooo........oo     84 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 79                                                    85 
 80 void EventAction::EndOfEventAction(const G4Eve     86 void EventAction::EndOfEventAction(const G4Event* evt)
 81 {                                              <<  87 {  
 82   // Get Postion and Momentum of primary       <<  88  //Get Postion and Momentum of primary
 83   //  beam index of per track                  <<  89  // beam index of per track
 84   G4int evtNb = evt->GetEventID();             <<  90  G4int evtNb = evt->GetEventID();
 85                                                <<  91  // const G4ThreeVector& pos = evt->GetPrimaryVertex()->GetPosition();
 86   Run* run = static_cast<Run*>(G4RunManager::G <<  92  // const G4ThreeVector& mom = evt->GetPrimaryVertex()
 87   run->AddEdepALL(fRunAction->GetEdepALL());   <<  93  //                               ->GetPrimary()->GetMomentum();
 88   run->AddEdepMedium(fRunAction->GetEdepMedium <<  94 
 89   run->AddEdepSlice(fRunAction->GetEdepSlice() <<  95  Run* run = static_cast<Run*>(
 90   run->AddEdepNeuron(fRunAction->GetEdepNeuron <<  96             G4RunManager::GetRunManager()->GetNonConstCurrentRun());
 91   run->AddEdepSoma(fRunAction->GetEdepSoma()); <<  97  run->AddEdepALL(fRunAction->GetEdepALL()); 
 92   run->AddEdepDend(fRunAction->GetEdepDend()); <<  98  run->AddEdepMedium(fRunAction->GetEdepMedium()); 
 93   run->AddEdepAxon(fRunAction->GetEdepAxon()); <<  99  run->AddEdepSlice(fRunAction->GetEdepSlice()); 
                                                   >> 100  run->AddEdepNeuron(fRunAction->GetEdepNeuron()); 
                                                   >> 101  run->AddEdepSoma(fRunAction->GetEdepSoma()); 
                                                   >> 102  run->AddEdepDend(fRunAction->GetEdepDend()); 
                                                   >> 103  run->AddEdepAxon(fRunAction->GetEdepAxon()); 
                                                   >> 104    // to calculate LET
                                                   >> 105    /*
                                                   >> 106    if (fRunAction->GetEdepALL() > 0.) 
                                                   >> 107    {   
                                                   >> 108    G4double LET = fRunAction->GetEdepALL()
                                                   >> 109        / ftrackLength() ;  
                                                   >> 110    run->AddPrimaryLET(LET);
                                                   >> 111    }   
                                                   >> 112    */
                                                   >> 113 /*    G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
                                                   >> 114     analysisManager->FillNtupleDColumn(4,0,fRunAction->GetEdepALL()/keV );
                                                   >> 115     analysisManager->FillNtupleDColumn(4,1,fRunAction->GetEdepMedium()/keV );
                                                   >> 116     analysisManager->FillNtupleDColumn(4,2,
                                                   >> 117            (fRunAction->GetEdepSlice()+fRunAction->GetEdepNeuron())/keV);
                                                   >> 118     analysisManager->FillNtupleDColumn(4,3,fRunAction->GetEdepNeuron()/keV );
                                                   >> 119     analysisManager->AddNtupleRow(4);
                                                   >> 120 */
 94   std::ofstream OutputEdep("OutputPerEvent.out    121   std::ofstream OutputEdep("OutputPerEvent.out", std::ios::app);
 95   OutputEdep << evtNb + 1 << '\t' << "   "  // << 122   OutputEdep<<   evtNb+1          << '\t' << "   "  // event number
 96                                             // << 123         // edep in all volume
 97              << fRunAction->GetEdepALL() / keV << 124    <<   fRunAction->GetEdepALL()/keV         << '\t' << "   " 
 98              << "   "                          << 125         // outside bounding box 
 99              // outside bounding box           << 126    <<   fRunAction->GetEdepMedium()/keV         << '\t' << "   " 
100              << fRunAction->GetEdepMedium() /  << 127    <<   (fRunAction->GetEdepSlice()+fRunAction->GetEdepNeuron())/keV 
101              << (fRunAction->GetEdepSlice() +  << 128    << '\t' << "   "//  inside Bounding Slice
102              << "   "  //  inside Bounding Sli << 129    <<   fRunAction->GetEdepNeuron()/keV         << '\t' << "   " 
103              << fRunAction->GetEdepNeuron() /  << 130    <<   fRunAction->GetEdepSoma()/keV         << '\t' << "   " 
104              << fRunAction->GetEdepSoma() / ke << 131    <<   fRunAction->GetEdepDend()/keV         << '\t' << "   " 
105              << '\t' << "   " << fRunAction->G << 132    <<   fRunAction->GetEdepAxon()/keV         << '\t' << "   " 
                                                   >> 133    << G4endl;  
                                                   >> 134  
                                                   >> 135  /*
                                                   >> 136  if (fRunAction->GetEdepNeuron() > 0.)
                                                   >> 137  {
                                                   >> 138  std::ofstream WriteDataInNeurN("0-Neur-EventN.out", std::ios::app);
                                                   >> 139  WriteDataInNeurN <<   evtNb+1          << '\t' << "   " // 
                                                   >> 140    <<   pos.x()/um          << '\t' << "   "  
                                                   >> 141    <<   pos.y()/um          << '\t' << "   "  
                                                   >> 142    <<   pos.z()/um          << '\t' << "   " 
                                                   >> 143    << G4endl; 
                                                   >> 144  }  
                                                   >> 145    */
106 }                                                 146 }
107                                                   147