Geant4 Cross Reference

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Geant4/examples/extended/medical/dna/neuron/plotDend.C

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

Diff markup

Differences between /examples/extended/medical/dna/neuron/plotDend.C (Version 11.3.0) and /examples/extended/medical/dna/neuron/plotDend.C (Version 5.2.p2)


  1 // -------------------------------------------      1 
  2 // -------------------------------------------    
  3 //                                                
  4 // *******************************************    
  5 // To execute this macro under ROOT,              
  6 // launch ROOT (usually type 'root' at your ma    
  7 // This macro needs Dend3DEdep.out file :         
  8 // *******************************************    
  9 {                                                 
 10 gROOT->Reset();                                   
 11 gStyle->SetOptStat(0000);                         
 12                                                   
 13 c1 = new TCanvas ("c1","",20,20,1200,600);        
 14 c1->Divide(2,1);                                  
 15                                                   
 16 Int_t ncols=0;                                    
 17 Int_t nlines = 0;                                 
 18                                                   
 19 FILE * fp = fopen("Dend3DEdep.out","r");          
 20 Float_t posX, posY, posZ ;                        
 21 Float_t distB, distA, EdepR, DoseR;               
 22 Float_t distMaxA = -1e-9;                         
 23 Float_t distMaxB = -1e-9;                         
 24 Float_t edepMax = -1e-9;                          
 25 Float_t doseMax = -1e-9;                          
 26 Float_t edepMin = 1e9;                            
 27 Float_t doseMin = 1e9;                            
 28                                                   
 29 h1 = new TProfile("Energy", "Energy deposits (    
 30 h2 = new TProfile("Dose", "Dose deposits (Gy)     
 31 while (1)                                         
 32    {                                              
 33       ncols = fscanf(fp," %f %f %f %f %f %f %f    
 34       if (ncols < 0) break;                       
 35       if (distMaxA < distA ) distMaxA = distA     
 36       if (distMaxB < distB ) distMaxB = distB     
 37       if (edepMax < EdepR ) edepMax = EdepR ;     
 38       if (doseMax < DoseR ) doseMax = DoseR ;     
 39       if (edepMin > EdepR ) edepMin = EdepR ;     
 40       if (doseMin > DoseR ) doseMin = DoseR ;     
 41       // ....                                     
 42       h1->Fill(-distB, EdepR);  // Basal dendr    
 43       h1->Fill(distA, EdepR); // Apical dendri    
 44       h2->Fill(-distB, DoseR);                    
 45       h2->Fill(distA, DoseR);                     
 46       nlines++;                                   
 47    }                                              
 48 fclose(fp);                                       
 49 cout << " Max and Min Energy deposits (keV) ==    
 50 cout << " Max and Min Dose deposits (Gy) ==  "    
 51 cout << " Maximum Basal Distance (um) == " <<     
 52 cout << " Maximum Apical Distance (um) == " <<    
 53                                                   
 54 c1->cd(1);                                        
 55 h1->Draw("P");                                    
 56 //gPad->SetLogy();                                
 57 h1->SetMarkerSize(2);                             
 58 h1->SetMarkerColor(4);                            
 59 h1->SetMarkerStyle(27);                           
 60 h1->SetFillStyle(3005);                           
 61 //h1->GetYaxis()->SetTitle("Energy deposits in    
 62 h1->GetXaxis()->SetTitle("Distance from Soma (    
 63 h1->GetYaxis()->SetRangeUser(edepMin, edepMax+    
 64 if (distMaxB > 0.)                                
 65 {                                                 
 66     TLatex text(-distMaxB,edepMax-1.,"Basal");    
 67     text.DrawClone();                             
 68 }                                                 
 69 if (distMaxA > 0.)                                
 70 {                                                 
 71     TLatex text(distMaxA/3.,edepMax-2.,"Apical    
 72     text.DrawClone();                             
 73 }                                                 
 74 h1->GetXaxis()->SetRangeUser(-distMaxB-10., di    
 75 //h1->Fit("gaus");                                
 76                                                   
 77 c1->cd(2);                                        
 78 h2->Draw("P");                                    
 79 //gPad->SetLogy();                                
 80 h2->SetMarkerSize(2);                             
 81 h2->SetMarkerColor(kRed);                         
 82 h2->SetMarkerStyle(27);                           
 83 h2->SetFillStyle(3005);                           
 84 //h2->GetYaxis()->SetTitle("Dose deposits in b    
 85 h2->GetXaxis()->SetTitle("Distance from Soma (    
 86 h2->GetYaxis()->SetRangeUser(doseMin, doseMax+    
 87 if (distMaxB > 0.)                                
 88 {                                                 
 89     TLatex text(-distMaxB,doseMax-0.1,"Basal")    
 90     text.DrawClone();                             
 91 }                                                 
 92 if (distMaxA > 0.)                                
 93 {                                                 
 94     TLatex text(distMaxA/3.,doseMax-0.2,"Apica    
 95     text.DrawClone();                             
 96 }                                                 
 97 h2->GetXaxis()->SetRangeUser(-distMaxB-10., di    
 98                                                   
 99 }                                                 
100                                                   
101