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Geant4/examples/extended/medical/dna/microdosimetry/src/SteppingAction.cc

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Diff markup

Differences between /examples/extended/medical/dna/microdosimetry/src/SteppingAction.cc (Version 11.3.0) and /examples/extended/medical/dna/microdosimetry/src/SteppingAction.cc (Version 6.1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 45, (2018) e722-e739                
 30 // Phys. Med. 31 (2015) 861-874                   
 31 // Med. Phys. 37 (2010) 4692-4708                 
 32 // Int. J. Model. Simul. Sci. Comput. 1 (2010)    
 33 // The Geant4-DNA web site is available at htt    
 34 //                                                
 35 //                                                
 36 /// \file SteppingAction.cc                       
 37 /// \brief Implementation of the SteppingActio    
 38                                                   
 39 #include "SteppingAction.hh"                      
 40                                                   
 41 #include "G4Alpha.hh"                             
 42 #include "G4AnalysisManager.hh"                   
 43 #include "G4DNAGenericIonsManager.hh"             
 44 #include "G4Electron.hh"                          
 45 #include "G4EventManager.hh"                      
 46 #include "G4Gamma.hh"                             
 47 #include "G4Proton.hh"                            
 48 #include "G4SystemOfUnits.hh"                     
 49                                                   
 50 //....oooOO0OOooo........oooOO0OOooo........oo    
 51                                                   
 52 SteppingAction::SteppingAction() : G4UserStepp    
 53                                                   
 54 //....oooOO0OOooo........oooOO0OOooo........oo    
 55                                                   
 56 SteppingAction::~SteppingAction() {}              
 57                                                   
 58 //....oooOO0OOooo........oooOO0OOooo........oo    
 59                                                   
 60 void SteppingAction::UserSteppingAction(const     
 61 {                                                 
 62   // Protection                                   
 63   if (!step->GetPostStepPoint()) return;          
 64   if (!step->GetPostStepPoint()->GetProcessDef    
 65                                                   
 66   //                                              
 67   G4double flagParticle = -1.;                    
 68   G4double flagProcess = -1.;                     
 69   G4double x, y, z, xp, yp, zp;                   
 70                                                   
 71   // Particle identification                      
 72                                                   
 73   // The following method avoids the usage of     
 74                                                   
 75   G4ParticleDefinition* partDef = step->GetTra    
 76                                                   
 77   if (partDef == G4Gamma::GammaDefinition()) f    
 78                                                   
 79   if (partDef == G4Electron::ElectronDefinitio    
 80                                                   
 81   if (partDef == G4Proton::ProtonDefinition())    
 82                                                   
 83   if (partDef == G4Alpha::AlphaDefinition()) f    
 84                                                   
 85   G4DNAGenericIonsManager* instance;              
 86   instance = G4DNAGenericIonsManager::Instance    
 87                                                   
 88   // Usage example                                
 89   /*                                              
 90   G4ParticleDefinition* protonDef = G4Proton::    
 91   G4ParticleDefinition* hydrogenDef = instance    
 92   G4ParticleDefinition* alphaPlusPlusDef = ins    
 93   G4ParticleDefinition* alphaPlusDef = instanc    
 94   G4ParticleDefinition* heliumDef = instance->    
 95   */                                              
 96                                                   
 97   if (partDef == instance->GetIon("hydrogen"))    
 98                                                   
 99   if (partDef == instance->GetIon("alpha+")) f    
100                                                   
101   if (partDef == instance->GetIon("helium")) f    
102                                                   
103   // Alternative method (based on string compa    
104                                                   
105   /*                                              
106   const G4String& particleName = step->GetTrac    
107       GetDefinition()->GetParticleName();         
108                                                   
109   if (particleName == "gamma")         flagPar    
110   else if (particleName == "e-")       flagPar    
111   else if (particleName == "proton")   flagPar    
112   else if (particleName == "hydrogen") flagPar    
113   else if (particleName == "alpha")    flagPar    
114   else if (particleName == "alpha+")   flagPar    
115   else if (particleName == "helium")   flagPar    
116   */                                              
117                                                   
118   // Process identification                       
119                                                   
120   // Process sub-types are listed in G4Physics    
121   // or in Geant4-DNA process class implementa    
122                                                   
123   G4StepPoint* preStep = step->GetPreStepPoint    
124   G4StepPoint* postStep = step->GetPostStepPoi    
125   G4int procID = postStep->GetProcessDefinedSt    
126                                                   
127   const G4String& processName = postStep->GetP    
128                                                   
129   if (processName == "Capture") flagProcess =     
130   // (no subType and procID exists at the mome    
131                                                   
132   else if (flagParticle == 0) {                   
133     if (procID == 12)                             
134       flagProcess = 81;                           
135     else if (procID == 13)                        
136       flagProcess = 82;                           
137     else if (procID == 14)                        
138       flagProcess = 83;                           
139     else if (procID == 11)                        
140       flagProcess = 84;                           
141   }                                               
142                                                   
143   else if (flagParticle == 1) {                   
144     if (procID == 58)                             
145       flagProcess = 10;                           
146     else if (procID == 51)                        
147       flagProcess = 11;                           
148     else if (procID == 52)                        
149       flagProcess = 12;                           
150     else if (procID == 53)                        
151       flagProcess = 13;                           
152     else if (procID == 55)                        
153       flagProcess = 14;                           
154     else if (procID == 54)                        
155       flagProcess = 15;                           
156     else if (procID == 10)                        
157       flagProcess = 110;                          
158     else if (procID == 1)                         
159       flagProcess = 120;                          
160     else if (procID == 2)                         
161       flagProcess = 130;                          
162   }                                               
163                                                   
164   else if (flagParticle == 2) {                   
165     if (procID == 51)                             
166       flagProcess = 21;                           
167     else if (procID == 52)                        
168       flagProcess = 22;                           
169     else if (procID == 53)                        
170       flagProcess = 23;                           
171     else if (procID == 56)                        
172       flagProcess = 24;                           
173     else if (procID == 10)                        
174       flagProcess = 210;                          
175     else if (procID == 1)                         
176       flagProcess = 220;                          
177     else if (procID == 2)                         
178       flagProcess = 230;                          
179     else if (procID == 8)                         
180       flagProcess = 240;                          
181   }                                               
182                                                   
183   else if (flagParticle == 3) {                   
184     if (procID == 51)                             
185       flagProcess = 31;                           
186     else if (procID == 52)                        
187       flagProcess = 32;                           
188     else if (procID == 53)                        
189       flagProcess = 33;                           
190     else if (procID == 57)                        
191       flagProcess = 35;                           
192   }                                               
193                                                   
194   else if (flagParticle == 4) {                   
195     if (procID == 51)                             
196       flagProcess = 41;                           
197     else if (procID == 52)                        
198       flagProcess = 42;                           
199     else if (procID == 53)                        
200       flagProcess = 43;                           
201     else if (procID == 56)                        
202       flagProcess = 44;                           
203     else if (procID == 10)                        
204       flagProcess = 410;                          
205     else if (procID == 1)                         
206       flagProcess = 420;                          
207     else if (procID == 2)                         
208       flagProcess = 430;                          
209     else if (procID == 8)                         
210       flagProcess = 440;                          
211   }                                               
212                                                   
213   else if (flagParticle == 5) {                   
214     if (procID == 51)                             
215       flagProcess = 51;                           
216     else if (procID == 52)                        
217       flagProcess = 52;                           
218     else if (procID == 53)                        
219       flagProcess = 53;                           
220     else if (procID == 56)                        
221       flagProcess = 54;                           
222     else if (procID == 57)                        
223       flagProcess = 55;                           
224     else if (procID == 10)                        
225       flagProcess = 510;                          
226     else if (procID == 1)                         
227       flagProcess = 520;                          
228     else if (procID == 2)                         
229       flagProcess = 530;                          
230     else if (procID == 8)                         
231       flagProcess = 540;                          
232   }                                               
233                                                   
234   else if (flagParticle == 6) {                   
235     if (procID == 51)                             
236       flagProcess = 61;                           
237     else if (procID == 52)                        
238       flagProcess = 62;                           
239     else if (procID == 53)                        
240       flagProcess = 63;                           
241     else if (procID == 57)                        
242       flagProcess = 65;                           
243   }                                               
244                                                   
245   else if (processName == "GenericIon_G4DNAIon    
246     flagProcess = 73;                             
247   else if (processName == "msc")                  
248     flagProcess = 710;                            
249   else if (processName == "CoulombScat")          
250     flagProcess = 720;                            
251   else if (processName == "ionIoni")              
252     flagProcess = 730;                            
253   else if (processName == "nuclearStopping")      
254     flagProcess = 740;                            
255   // (for all GenericIons)                        
256                                                   
257   // Alternatively, using process names           
258                                                   
259   /*                                              
260   else if (processName=="e-_G4DNAElectronSolva    
261   else if (processName=="e-_G4DNAElastic")        
262   else if (processName=="e-_G4DNAExcitation")     
263   else if (processName=="e-_G4DNAIonisation")     
264   else if (processName=="e-_G4DNAAttachment")     
265   else if (processName=="e-_G4DNAVibExcitation    
266                                                   
267   else if (processName=="proton_G4DNAElastic")    
268   else if (processName=="proton_G4DNAExcitatio    
269   else if (processName=="proton_G4DNAIonisatio    
270   else if (processName=="proton_G4DNAChargeDec    
271                                                   
272   else if (processName=="hydrogen_G4DNAElastic    
273   else if (processName=="hydrogen_G4DNAExcitat    
274   else if (processName=="hydrogen_G4DNAIonisat    
275   else if (processName=="hydrogen_G4DNAChargeI    
276                                                   
277   else if (processName=="alpha_G4DNAElastic")     
278   else if (processName=="alpha_G4DNAExcitation    
279   else if (processName=="alpha_G4DNAIonisation    
280   else if (processName=="alpha_G4DNAChargeDecr    
281                                                   
282   else if (processName=="alpha+_G4DNAElastic")    
283   else if (processName=="alpha+_G4DNAExcitatio    
284   else if (processName=="alpha+_G4DNAIonisatio    
285   else if (processName=="alpha+_G4DNAChargeDec    
286   else if (processName=="alpha+_G4DNAChargeInc    
287                                                   
288   else if (processName=="helium_G4DNAElastic")    
289   else if (processName=="helium_G4DNAExcitatio    
290   else if (processName=="helium_G4DNAIonisatio    
291   else if (processName=="helium_G4DNAChargeInc    
292                                                   
293   else if (processName=="GenericIon_G4DNAIonis    
294                                                   
295   */                                              
296                                                   
297   if (processName != "Transportation") {          
298     x = preStep->GetPosition().x() / nanometer    
299     y = preStep->GetPosition().y() / nanometer    
300     z = preStep->GetPosition().z() / nanometer    
301                                                   
302     xp = postStep->GetPosition().x() / nanomet    
303     yp = postStep->GetPosition().y() / nanomet    
304     zp = postStep->GetPosition().z() / nanomet    
305                                                   
306     // get analysis manager                       
307                                                   
308     G4AnalysisManager* analysisManager = G4Ana    
309                                                   
310     // fill ntuple                                
311     analysisManager->FillNtupleDColumn(0, flag    
312     analysisManager->FillNtupleDColumn(1, flag    
313     analysisManager->FillNtupleDColumn(2, xp);    
314     analysisManager->FillNtupleDColumn(3, yp);    
315     analysisManager->FillNtupleDColumn(4, zp);    
316     analysisManager->FillNtupleDColumn(5, step    
317                                                   
318     analysisManager->FillNtupleDColumn(           
319       6, std::sqrt((x - xp) * (x - xp) + (y -     
320                                                   
321     analysisManager->FillNtupleDColumn(           
322       7, (preStep->GetKineticEnergy() - postSt    
323                                                   
324     analysisManager->FillNtupleDColumn(8, preS    
325                                                   
326     analysisManager->FillNtupleDColumn(9, preS    
327                                             *     
328                                                   
329     analysisManager->FillNtupleIColumn(           
330       10, G4EventManager::GetEventManager()->G    
331                                                   
332     analysisManager->FillNtupleIColumn(11, ste    
333                                                   
334     analysisManager->FillNtupleIColumn(12, ste    
335                                                   
336     analysisManager->FillNtupleIColumn(13, ste    
337                                                   
338     analysisManager->AddNtupleRow();              
339   }                                               
340 }                                                 
341