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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // dnadamage3 example is derived from the chem 27 // dnadamage3 example is derived from the chem6 example
28 // chem6 example authors: W. G. Shin and S. In 28 // chem6 example authors: W. G. Shin and S. Incerti (CENBG, France)
29 // 29 //
30 // Any report or published results obtained us 30 // Any report or published results obtained using the Geant4-DNA software
31 // shall cite the following Geant4-DNA collabo 31 // shall cite the following Geant4-DNA collaboration publication:
32 // J. Appl. Phys. 125 (2019) 104301 32 // J. Appl. Phys. 125 (2019) 104301
33 // Med. Phys. 45 (2018) e722-e739 33 // Med. Phys. 45 (2018) e722-e739
34 // J. Comput. Phys. 274 (2014) 841-882 34 // J. Comput. Phys. 274 (2014) 841-882
35 // Med. Phys. 37 (2010) 4692-4708 35 // Med. Phys. 37 (2010) 4692-4708
36 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 36 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157-178
37 // The Geant4-DNA web site is available at htt 37 // The Geant4-DNA web site is available at http://geant4-dna.org
38 // 38 //
39 // Authors: J. Naoki D. Kondo (UCSF, US) 39 // Authors: J. Naoki D. Kondo (UCSF, US)
40 // J. Ramos-Mendez and B. Faddegon (U 40 // J. Ramos-Mendez and B. Faddegon (UCSF, US)
41 // 41 //
42 /// \file ActionInitialization.cc 42 /// \file ActionInitialization.cc
43 /// \brief Implementation of the ActionInitial 43 /// \brief Implementation of the ActionInitialization class
44 44
45 #include "ActionInitialization.hh" 45 #include "ActionInitialization.hh"
46 <<
47 #include "PrimaryGeneratorAction.hh" 46 #include "PrimaryGeneratorAction.hh"
48 #include "RunAction.hh" 47 #include "RunAction.hh"
49 #include "StackingAction.hh" 48 #include "StackingAction.hh"
50 #include "TimeStepAction.hh" 49 #include "TimeStepAction.hh"
51 50
52 #include "G4DNAChemistryManager.hh" 51 #include "G4DNAChemistryManager.hh"
53 #include "G4H2O.hh" <<
54 #include "G4MoleculeCounter.hh" 52 #include "G4MoleculeCounter.hh"
55 #include "G4Scheduler.hh" 53 #include "G4Scheduler.hh"
56 54
>> 55 #include "G4H2O.hh"
>> 56
57 //....oooOO0OOooo........oooOO0OOooo........oo 57 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
58 58
59 ActionInitialization::ActionInitialization() : << 59 ActionInitialization::ActionInitialization()
>> 60 : G4VUserActionInitialization()
>> 61 {
>> 62 }
60 63
61 //....oooOO0OOooo........oooOO0OOooo........oo 64 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
62 65
63 void ActionInitialization::BuildForMaster() co 66 void ActionInitialization::BuildForMaster() const
64 { 67 {
65 SetUserAction(new RunAction()); 68 SetUserAction(new RunAction());
66 G4DNAChemistryManager::Instance()->ResetCoun 69 G4DNAChemistryManager::Instance()->ResetCounterWhenRunEnds(false);
67 } 70 }
68 71
69 //....oooOO0OOooo........oooOO0OOooo........oo 72 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
70 73
71 void ActionInitialization::Build() const 74 void ActionInitialization::Build() const
72 { 75 {
>> 76
73 G4MoleculeCounter::Instance()->Use(); 77 G4MoleculeCounter::Instance()->Use();
74 78
75 G4MoleculeCounter::Instance()->DontRegister( 79 G4MoleculeCounter::Instance()->DontRegister(G4H2O::Definition());
76 80
77 // sequential mode 81 // sequential mode
78 if (G4Threading::IsMultithreadedApplication( << 82 if(G4Threading::IsMultithreadedApplication() == false) {
79 G4DNAChemistryManager::Instance()->ResetCo 83 G4DNAChemistryManager::Instance()->ResetCounterWhenRunEnds(false);
80 } 84 }
81 85
82 SetUserAction(new PrimaryGeneratorAction()); 86 SetUserAction(new PrimaryGeneratorAction());
83 SetUserAction(new RunAction()); 87 SetUserAction(new RunAction());
84 SetUserAction(new StackingAction()); 88 SetUserAction(new StackingAction());
85 G4Scheduler::Instance()->SetUserAction(new T 89 G4Scheduler::Instance()->SetUserAction(new TimeStepAction());
86 } 90 }
87 91
88 //....oooOO0OOooo........oooOO0OOooo........oo 92 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
89 93