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Geant4/examples/extended/medical/dna/chem6/src/PrimaryKiller.cc

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Differences between /examples/extended/medical/dna/chem6/src/PrimaryKiller.cc (Version 11.3.0) and /examples/extended/medical/dna/chem6/src/PrimaryKiller.cc (Version 11.2.1)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // This example is provided by the Geant4-DNA      26 // This example is provided by the Geant4-DNA collaboration
 27 // chem6 example is derived from chem4 and che     27 // chem6 example is derived from chem4 and chem5 examples
 28 //                                                 28 //
 29 // Any report or published results obtained us     29 // Any report or published results obtained using the Geant4-DNA software
 30 // shall cite the following Geant4-DNA collabo     30 // shall cite the following Geant4-DNA collaboration publication:
 31 // J. Appl. Phys. 125 (2019) 104301                31 // J. Appl. Phys. 125 (2019) 104301
 32 // Med. Phys. 45 (2018) e722-e739                  32 // Med. Phys. 45 (2018) e722-e739
 33 // J. Comput. Phys. 274 (2014) 841-882             33 // J. Comput. Phys. 274 (2014) 841-882
 34 // Med. Phys. 37 (2010) 4692-4708                  34 // Med. Phys. 37 (2010) 4692-4708
 35 // Int. J. Model. Simul. Sci. Comput. 1 (2010)     35 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157-178
 36 // The Geant4-DNA web site is available at htt     36 // The Geant4-DNA web site is available at http://geant4-dna.org
 37 //                                                 37 //
 38 // Authors: W. G. Shin and S. Incerti (CENBG,      38 // Authors: W. G. Shin and S. Incerti (CENBG, France)
 39 //                                                 39 //
 40 // $Id$                                            40 // $Id$
 41 //                                                 41 //
 42 /// \file PrimaryKiller.cc                         42 /// \file PrimaryKiller.cc
 43 /// \brief Implementation of the PrimaryKiller     43 /// \brief Implementation of the PrimaryKiller class
 44                                                    44 
 45 #include "PrimaryKiller.hh"                        45 #include "PrimaryKiller.hh"
 46                                                    46 
                                                   >>  47 #include <G4UnitsTable.hh>
 47 #include <G4Event.hh>                              48 #include <G4Event.hh>
 48 #include <G4RunManager.hh>                     << 
 49 #include <G4SystemOfUnits.hh>                      49 #include <G4SystemOfUnits.hh>
 50 #include <G4UIcmdWith3VectorAndUnit.hh>        << 
 51 #include <G4UIcmdWithADoubleAndUnit.hh>            50 #include <G4UIcmdWithADoubleAndUnit.hh>
 52 #include <G4UnitsTable.hh>                     <<  51 #include <G4UIcmdWith3VectorAndUnit.hh>
                                                   >>  52 #include <G4RunManager.hh>
 53                                                    53 
 54 /** \file PrimaryKiller.cc                         54 /** \file PrimaryKiller.cc
 55     \class PrimaryKiller                           55     \class PrimaryKiller
 56                                                    56 
 57     Kill the primary particle:                     57     Kill the primary particle:
 58     - either after a given energy loss             58     - either after a given energy loss
 59     - or after the primary particle has reache     59     - or after the primary particle has reached a given energy
 60  */                                                60  */
 61                                                    61 
 62 //....oooOO0OOooo........oooOO0OOooo........oo     62 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
 63                                                    63 
 64 PrimaryKiller::PrimaryKiller(G4String name, G4     64 PrimaryKiller::PrimaryKiller(G4String name, G4int depth)
 65   : G4VPrimitiveScorer(name, depth), G4UImesse <<  65 : G4VPrimitiveScorer(name,depth),
                                                   >>  66   G4UImessenger()
 66 {                                                  67 {
 67   fELoss = 0.;  // cumulated energy for curren <<  68   fELoss = 0.; // cumulated energy for current event
 68                                                    69 
 69   fELossRange_Min = DBL_MAX;  // fELoss from w <<  70   fELossRange_Min = DBL_MAX; // fELoss from which the primary is killed
 70   fELossRange_Max = DBL_MAX;  // fELoss from w <<  71   fELossRange_Max = DBL_MAX; // fELoss from which the event is aborted
 71   fKineticE_Min = 0;  // kinetic energy below  <<  72   fKineticE_Min = 0; // kinetic energy below which the primary is killed
 72   fPhantomSize = G4ThreeVector(1 * km, 1 * km, <<  73   fPhantomSize = G4ThreeVector(1*km,1*km,1*km);
 73                                                <<  74 
 74   fpELossUI = new G4UIcmdWithADoubleAndUnit("/ <<  75   fpELossUI = new G4UIcmdWithADoubleAndUnit("/primaryKiller/eLossMin",this);
 75   fpAbortEventIfELossUpperThan = new G4UIcmdWi <<  76   fpAbortEventIfELossUpperThan =
 76   fpMinKineticE = new G4UIcmdWithADoubleAndUni <<  77     new G4UIcmdWithADoubleAndUnit("/primaryKiller/eLossMax", this);
 77   fpSizeUI = new G4UIcmdWith3VectorAndUnit("/p <<  78   fpMinKineticE =
                                                   >>  79     new G4UIcmdWithADoubleAndUnit("/primaryKiller/minKineticE", this);
                                                   >>  80   fpSizeUI = new G4UIcmdWith3VectorAndUnit("/primaryKiller/setSize",this);
 78   fpSizeUI->SetDefaultUnit("um");                  81   fpSizeUI->SetDefaultUnit("um");
 79 }                                                  82 }
 80                                                    83 
 81 //....oooOO0OOooo........oooOO0OOooo........oo     84 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
 82                                                    85 
 83 PrimaryKiller::~PrimaryKiller()                    86 PrimaryKiller::~PrimaryKiller()
 84 {                                                  87 {
 85   delete fpELossUI;                                88   delete fpELossUI;
 86   delete fpAbortEventIfELossUpperThan;             89   delete fpAbortEventIfELossUpperThan;
 87   delete fpSizeUI;                                 90   delete fpSizeUI;
 88 }                                                  91 }
 89                                                    92 
 90 //....oooOO0OOooo........oooOO0OOooo........oo     93 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
 91                                                    94 
 92 void PrimaryKiller::SetNewValue(G4UIcommand* c <<  95 void PrimaryKiller::SetNewValue(G4UIcommand * command,
                                                   >>  96                                 G4String newValue)
 93 {                                                  97 {
 94   if (command == fpELossUI) {                  <<  98   if(command == fpELossUI){
 95     fELossRange_Min = fpELossUI->GetNewDoubleV     99     fELossRange_Min = fpELossUI->GetNewDoubleValue(newValue);
 96   }                                               100   }
 97   else if (command == fpAbortEventIfELossUpper << 101   else if(command == fpAbortEventIfELossUpperThan){
 98     fELossRange_Max = fpAbortEventIfELossUpper << 102     fELossRange_Max =
                                                   >> 103     fpAbortEventIfELossUpperThan->GetNewDoubleValue(newValue);
 99   }                                               104   }
100   else if (command == fpSizeUI) {              << 105   else if(command == fpSizeUI){
101     fPhantomSize = fpSizeUI->GetNew3VectorValu    106     fPhantomSize = fpSizeUI->GetNew3VectorValue(newValue);
102   }                                               107   }
103 }                                                 108 }
104                                                   109 
105 //....oooOO0OOooo........oooOO0OOooo........oo    110 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
106                                                   111 
107 G4bool PrimaryKiller::ProcessHits(G4Step* aSte << 112 G4bool PrimaryKiller::ProcessHits(G4Step* aStep,G4TouchableHistory*)
108 {                                                 113 {
                                                   >> 114 
109   const G4Track* track = aStep->GetTrack();       115   const G4Track* track = aStep->GetTrack();
110   G4ThreeVector pos = aStep->GetPostStepPoint(    116   G4ThreeVector pos = aStep->GetPostStepPoint()->GetPosition();
111                                                   117 
112   if (std::abs(pos.x()) > fPhantomSize.getX()  << 118   if(std::abs(pos.x())>fPhantomSize.getX()/2 ||
113       || std::abs(pos.z()) > fPhantomSize.getZ << 119     std::abs(pos.y())>fPhantomSize.getY()/2 ||
114   {                                            << 120     std::abs(pos.z())>fPhantomSize.getZ()/2){
115     ((G4Track*)track)->SetTrackStatus(fStopAnd    121     ((G4Track*)track)->SetTrackStatus(fStopAndKill);
116     return false;                                 122     return false;
117   }                                               123   }
118                                                   124 
119   if (track->GetTrackID() != 1 || track->GetPa << 125   if(track->GetTrackID() != 1 ||
120     return FALSE;                              << 126      track->GetParticleDefinition()->GetPDGEncoding() != 11) return FALSE;
121                                                   127 
122   //-------------------                           128   //-------------------
123                                                   129 
124   double kineticE = aStep->GetPostStepPoint()-    130   double kineticE = aStep->GetPostStepPoint()->GetKineticEnergy();
125                                                   131 
126   G4double eLoss = aStep->GetPreStepPoint()->G << 132   G4double eLoss = aStep->GetPreStepPoint()->GetKineticEnergy()
                                                   >> 133                   - kineticE;
127                                                   134 
128   if (eLoss == 0.) return FALSE;               << 135   if ( eLoss == 0. ) return FALSE;
129                                                   136 
130   //-------------------                           137   //-------------------
131                                                   138 
132   fELoss += eLoss;                             << 139   fELoss+=eLoss;
133                                                << 140   
134   if (fELoss > fELossRange_Max) {              << 141   if(fELoss > fELossRange_Max){
135     G4RunManager::GetRunManager()->AbortEvent(    142     G4RunManager::GetRunManager()->AbortEvent();
136     /*    int eventID =                        << 143 /*    int eventID =
137          G4EventManager::GetEventManager()->Ge << 144      G4EventManager::GetEventManager()->GetConstCurrentEvent()->GetEventID();
138                                                   145 
139         G4cout << " * PrimaryKiller: aborts ev << 146     G4cout << " * PrimaryKiller: aborts event " << eventID <<" energy loss "
140                   "is too large. \n"           << 147               "is too large. \n"
141                << " * Energy loss by primary i << 148            << " * Energy loss by primary is: "
142                << G4BestUnit(fELoss, "Energy") << 149            << G4BestUnit(fELoss, "Energy")
143                << ". Event is aborted if the E << 150            << ". Event is aborted if the Eloss is > "
144                << G4BestUnit(fELossRange_Max,  << 151            << G4BestUnit(fELossRange_Max, "Energy")
145                << G4endl;                      << 152            << G4endl;
146      */                                        << 153  */
147   }                                               154   }
148                                                   155 
149   if (fELoss >= fELossRange_Min || kineticE <= << 156   if(fELoss >= fELossRange_Min || kineticE <= fKineticE_Min){
150     ((G4Track*)track)->SetTrackStatus(fStopAnd    157     ((G4Track*)track)->SetTrackStatus(fStopAndKill);
151     //     G4cout << "kill track at : "<<'\n'; << 158 //     G4cout << "kill track at : "<<'\n';
152     //           << G4BestUnit(kineticE, "Ener << 159 //           << G4BestUnit(kineticE, "Energy")
153     //           << ", E loss is: "            << 160 //           << ", E loss is: "
154     //           << G4BestUnit(fELoss, "Energy << 161 //           << G4BestUnit(fELoss, "Energy")
155     //           << " /fELossMax: "            << 162 //           << " /fELossMax: "
156     //           << G4BestUnit(fELossMax, "Ene << 163 //           << G4BestUnit(fELossMax, "Energy")
157     //           << ", EThreshold is: "        << 164 //           << ", EThreshold is: "
158     //           << G4BestUnit(fEThreshold, "E << 165 //           << G4BestUnit(fEThreshold, "Energy")
159     //           << G4endl;                    << 166 //           << G4endl;
160   }                                               167   }
161                                                   168 
162   return TRUE;                                    169   return TRUE;
163 }                                                 170 }
164                                                   171 
165 //....oooOO0OOooo........oooOO0OOooo........oo    172 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
166                                                   173 
167 void PrimaryKiller::Initialize(G4HCofThisEvent    174 void PrimaryKiller::Initialize(G4HCofThisEvent* /*HCE*/)
168 {                                                 175 {
169   fELoss = 0.;                                    176   fELoss = 0.;
170 }                                                 177 }
171                                                   178 
172 //....oooOO0OOooo........oooOO0OOooo........oo    179 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
173                                                   180 
174 void PrimaryKiller::EndOfEvent(G4HCofThisEvent << 181 void PrimaryKiller::EndOfEvent(G4HCofThisEvent*)
                                                   >> 182 {
                                                   >> 183 }
175                                                   184 
176 //....oooOO0OOooo........oooOO0OOooo........oo    185 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
177                                                   186 
178 void PrimaryKiller::DrawAll()                     187 void PrimaryKiller::DrawAll()
179 {                                              << 188 {;}
180   ;                                            << 
181 }                                              << 
182                                                   189 
183 //....oooOO0OOooo........oooOO0OOooo........oo    190 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
184                                                   191 
185 void PrimaryKiller::PrintAll() {}              << 192 void PrimaryKiller::PrintAll()
                                                   >> 193 {}
186                                                   194 
187 //....oooOO0OOooo........oooOO0OOooo........oo    195 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
188                                                   196