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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // chem6 example is derived from chem4 and che 27 // chem6 example is derived from chem4 and chem5 examples
28 // 28 //
29 // Any report or published results obtained us 29 // Any report or published results obtained using the Geant4-DNA software
30 // shall cite the following Geant4-DNA collabo 30 // shall cite the following Geant4-DNA collaboration publication:
31 // J. Appl. Phys. 125 (2019) 104301 31 // J. Appl. Phys. 125 (2019) 104301
32 // Med. Phys. 45 (2018) e722-e739 32 // Med. Phys. 45 (2018) e722-e739
33 // J. Comput. Phys. 274 (2014) 841-882 33 // J. Comput. Phys. 274 (2014) 841-882
34 // Med. Phys. 37 (2010) 4692-4708 34 // Med. Phys. 37 (2010) 4692-4708
35 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 35 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157-178
36 // The Geant4-DNA web site is available at htt 36 // The Geant4-DNA web site is available at http://geant4-dna.org
37 // 37 //
38 // Authors: W. G. Shin and S. Incerti (CENBG, 38 // Authors: W. G. Shin and S. Incerti (CENBG, France)
39 // 39 //
40 /// \file ActionInitialization.cc 40 /// \file ActionInitialization.cc
41 /// \brief Implementation of the ActionInitial 41 /// \brief Implementation of the ActionInitialization class
42 42
43 #include "ActionInitialization.hh" 43 #include "ActionInitialization.hh"
44 <<
45 #include "PrimaryGeneratorAction.hh" 44 #include "PrimaryGeneratorAction.hh"
46 #include "RunAction.hh" 45 #include "RunAction.hh"
47 #include "StackingAction.hh" 46 #include "StackingAction.hh"
48 #include "TimeStepAction.hh" 47 #include "TimeStepAction.hh"
49 48
50 #include "G4DNAChemistryManager.hh" 49 #include "G4DNAChemistryManager.hh"
51 #include "G4H2O.hh" <<
52 #include "G4MoleculeCounter.hh" 50 #include "G4MoleculeCounter.hh"
53 #include "G4Scheduler.hh" 51 #include "G4Scheduler.hh"
54 52
>> 53 #include "G4H2O.hh"
>> 54
55 //....oooOO0OOooo........oooOO0OOooo........oo 55 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
56 56
57 ActionInitialization::ActionInitialization() : << 57 ActionInitialization::ActionInitialization()
>> 58 : G4VUserActionInitialization()
>> 59 {
>> 60 }
58 61
59 //....oooOO0OOooo........oooOO0OOooo........oo 62 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
60 63
61 ActionInitialization::~ActionInitialization() << 64 ActionInitialization::~ActionInitialization()
>> 65 {
>> 66 }
62 67
63 //....oooOO0OOooo........oooOO0OOooo........oo 68 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
64 69
65 void ActionInitialization::BuildForMaster() co 70 void ActionInitialization::BuildForMaster() const
66 { 71 {
67 SetUserAction(new RunAction()); 72 SetUserAction(new RunAction());
68 G4DNAChemistryManager::Instance()->ResetCoun 73 G4DNAChemistryManager::Instance()->ResetCounterWhenRunEnds(false);
69 } 74 }
70 75
71 //....oooOO0OOooo........oooOO0OOooo........oo 76 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
72 77
73 void ActionInitialization::Build() const 78 void ActionInitialization::Build() const
74 { 79 {
75 G4MoleculeCounter::Instance()->Use(); << 80
76 // G4MoleculeCounter::Instance()->SetVerbos << 81 G4MoleculeCounter::Use();
>> 82 // G4MoleculeCounter::Instance()->SetVerbose(2);
77 83
78 G4MoleculeCounter::Instance()->DontRegister( 84 G4MoleculeCounter::Instance()->DontRegister(G4H2O::Definition());
79 85
80 // sequential mode 86 // sequential mode
81 if (G4Threading::IsMultithreadedApplication( << 87 if(G4Threading::IsMultithreadedApplication() == false) {
82 G4DNAChemistryManager::Instance()->ResetCo 88 G4DNAChemistryManager::Instance()->ResetCounterWhenRunEnds(false);
83 } 89 }
84 90
85 SetUserAction(new PrimaryGeneratorAction()); 91 SetUserAction(new PrimaryGeneratorAction());
86 SetUserAction(new RunAction()); 92 SetUserAction(new RunAction());
87 SetUserAction(new StackingAction()); 93 SetUserAction(new StackingAction());
88 G4Scheduler::Instance()->SetUserAction(new T 94 G4Scheduler::Instance()->SetUserAction(new TimeStepAction());
89 } 95 }
90 96
91 //....oooOO0OOooo........oooOO0OOooo........oo 97 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
92 98