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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // J. Comput. Phys. 274 (2014) 841-882 30 // J. Comput. Phys. 274 (2014) 841-882
31 // The Geant4-DNA web site is available at htt 31 // The Geant4-DNA web site is available at http://geant4-dna.org
32 // 32 //
33 /// \file ActionInitialization.cc 33 /// \file ActionInitialization.cc
34 /// \brief Implementation of the ActionInitial 34 /// \brief Implementation of the ActionInitialization class
35 35
36 #include "ActionInitialization.hh" 36 #include "ActionInitialization.hh"
37 <<
38 #include "PrimaryGeneratorAction.hh" 37 #include "PrimaryGeneratorAction.hh"
39 #include "RunAction.hh" 38 #include "RunAction.hh"
40 #include "StackingAction.hh" 39 #include "StackingAction.hh"
41 #include "TrackingAction.hh" 40 #include "TrackingAction.hh"
42 41
43 #include "G4DNAChemistryManager.hh" 42 #include "G4DNAChemistryManager.hh"
44 #include "G4H2O.hh" <<
45 #include "G4MoleculeCounter.hh" 43 #include "G4MoleculeCounter.hh"
46 #include "G4Scheduler.hh" 44 #include "G4Scheduler.hh"
47 45
>> 46 #include "G4H2O.hh"
>> 47
48 //....oooOO0OOooo........oooOO0OOooo........oo 48 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
49 49
50 ActionInitialization::ActionInitialization() : << 50 ActionInitialization::ActionInitialization()
>> 51 : G4VUserActionInitialization()
>> 52 {
>> 53 }
51 54
52 //....oooOO0OOooo........oooOO0OOooo........oo 55 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
53 56
54 ActionInitialization::~ActionInitialization() << 57 ActionInitialization::~ActionInitialization()
>> 58 {
>> 59 }
55 60
56 //....oooOO0OOooo........oooOO0OOooo........oo 61 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
57 62
58 void ActionInitialization::BuildForMaster() co 63 void ActionInitialization::BuildForMaster() const
59 { 64 {
60 SetUserAction(new RunAction()); 65 SetUserAction(new RunAction());
>> 66 // G4MoleculeCounter::Use();
>> 67 // G4MoleculeCounter::Instance()->SetVerbose(2);
>> 68 // G4MoleculeCounter::Instance()->DontRegister(G4H2O::Definition());
61 G4DNAChemistryManager::Instance()->ResetCoun 69 G4DNAChemistryManager::Instance()->ResetCounterWhenRunEnds(false);
62 } 70 }
63 71
64 //....oooOO0OOooo........oooOO0OOooo........oo 72 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
65 73
66 void ActionInitialization::Build() const 74 void ActionInitialization::Build() const
67 { 75 {
68 G4MoleculeCounter::Instance()->Use(); << 76 G4MoleculeCounter::Use();
69 // G4MoleculeCounter::Instance()->SetVerbose 77 // G4MoleculeCounter::Instance()->SetVerbose(2);
70 G4MoleculeCounter::Instance()->DontRegister( 78 G4MoleculeCounter::Instance()->DontRegister(G4H2O::Definition());
71 << 79
72 // sequential mode 80 // sequential mode
73 if (G4Threading::IsMultithreadedApplication( << 81 if(G4Threading::IsMultithreadedApplication() == false)
>> 82 {
74 G4DNAChemistryManager::Instance()->ResetCo 83 G4DNAChemistryManager::Instance()->ResetCounterWhenRunEnds(false);
75 } 84 }
76 85
77 SetUserAction(new PrimaryGeneratorAction()); 86 SetUserAction(new PrimaryGeneratorAction());
78 SetUserAction(new RunAction()); 87 SetUserAction(new RunAction());
79 SetUserAction(new StackingAction()); 88 SetUserAction(new StackingAction());
80 // SetUserAction(new TrackingAction()); << 89 // SetUserAction(new TrackingAction());
81 } 90 }
82 91
83 //....oooOO0OOooo........oooOO0OOooo........oo 92 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
84 93