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Geant4/examples/extended/medical/dna/UHDR/src/ChemPureWaterBuilder.cc

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

Diff markup

Differences between /examples/extended/medical/dna/UHDR/src/ChemPureWaterBuilder.cc (Version 11.3.0) and /examples/extended/medical/dna/UHDR/src/ChemPureWaterBuilder.cc (Version 5.2)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26                                                   
 27 #include "ChemPureWaterBuilder.hh"                
 28                                                   
 29 #include "G4DNAMolecularReactionTable.hh"         
 30 #include "G4MoleculeTable.hh"                     
 31 #include "G4SystemOfUnits.hh"                     
 32 //....oooOO0OOooo........oooOO0OOooo........oo    
 33                                                   
 34 void ChemPureWaterBuilder::WaterScavengerReact    
 35 {                                                 
 36   // Get the molecular configuration              
 37   auto table = G4MoleculeTable::Instance();       
 38                                                   
 39   G4MolecularConfiguration* OH = table->GetCon    
 40   G4MolecularConfiguration* OHm = table->GetCo    
 41   G4MolecularConfiguration* H3Op = table->GetC    
 42   G4MolecularConfiguration* e_aq = table->GetC    
 43   G4MolecularConfiguration* H = table->GetConf    
 44   G4MolecularConfiguration* H2O2 = table->GetC    
 45   G4MolecularConfiguration* HO2 = table->GetCo    
 46   G4MolecularConfiguration* HO2m = table->GetC    
 47   G4MolecularConfiguration* Om = table->GetCon    
 48   G4MolecularConfiguration* O2 = table->GetCon    
 49   G4MolecularConfiguration* O2m = table->GetCo    
 50   G4MolecularConfiguration* O3m = table->GetCo    
 51   G4MolecularConfiguration* H2O = table->GetCo    
 52   G4MolecularConfiguration* H3OpB = table->Get    
 53   G4MolecularConfiguration* OHmB = table->GetC    
 54   //---------------1--------------------------    
 55   //------------------------------------------    
 56   // HO2 + H2O -> H3O+ + O2-                      
 57   // 4.78e10*std::pow(10, -pka (4.8257) = 7575    
 58   auto reactionData = new G4DNAMolecularReacti    
 59   reactionData->AddProduct(H3OpB);                
 60   reactionData->AddProduct(O2m);                  
 61   reactionData->SetReactionType(6);  // Equili    
 62   pReactionTable->SetReaction(reactionData);      
 63                                                   
 64   //------------------------------------------    
 65   // O2- + H3O+(B) -> HO2 + H2O 4.73e3 / s        
 66   reactionData = new G4DNAMolecularReactionDat    
 67                                                   
 68   reactionData->AddProduct(HO2);                  
 69   reactionData->SetReactionType(6);  // Equili    
 70   pReactionTable->SetReaction(reactionData);      
 71                                                   
 72   //------------------------------------------    
 73   //--------------2---------------------------    
 74   // H + H2O -> eaq- + H3O+ 5.94 / s pkA = 9.5    
 75   reactionData = new G4DNAMolecularReactionDat    
 76   reactionData->AddProduct(e_aq);                 
 77   reactionData->AddProduct(H3OpB);                
 78   pReactionTable->SetReaction(reactionData);      
 79   //------------------------------------------    
 80   // eaq- + H3O+(B) -> H + H2O 2.09e3 / s         
 81   reactionData = new G4DNAMolecularReactionDat    
 82   reactionData->AddProduct(H);                    
 83   pReactionTable->SetReaction(reactionData);      
 84                                                   
 85   //------------------------------------------    
 86   //--------------3---------------------------    
 87   // eaq- + H2O -> H + OH- 15.7 / M * s pKa =     
 88   reactionData = new G4DNAMolecularReactionDat    
 89   reactionData->AddProduct(H);                    
 90   reactionData->AddProduct(OHmB);                 
 91   pReactionTable->SetReaction(reactionData);      
 92   //------------------------------------------    
 93   // H + OH-(B) -> H2O + eaq- 2.49e3 / s          
 94   reactionData = new G4DNAMolecularReactionDat    
 95                                                   
 96   reactionData->AddProduct(e_aq);                 
 97   pReactionTable->SetReaction(reactionData);      
 98                                                   
 99   //------------4-----------------------------    
100   //------------------------------------------    
101   // O2- + H2O -> HO2 + OH- 0.15 / s              
102   reactionData = new G4DNAMolecularReactionDat    
103   reactionData->AddProduct(HO2);                  
104   reactionData->AddProduct(OHmB);                 
105   pReactionTable->SetReaction(reactionData);      
106   //------------------------------------------    
107   // HO2 + OH-(B) -> O2- + H2O                    
108   reactionData = new G4DNAMolecularReactionDat    
109   reactionData->AddProduct(O2m);                  
110   pReactionTable->SetReaction(reactionData);      
111   //-----------5------------------------------    
112   //------------------------------------------    
113   // HO2- + H2O -> H2O2 + OH- 1.36e6 / M * s p    
114   reactionData = new G4DNAMolecularReactionDat    
115   reactionData->AddProduct(H2O2);                 
116   reactionData->AddProduct(OHmB);                 
117   reactionData->SetReactionType(7);  // Equili    
118   pReactionTable->SetReaction(reactionData);      
119   //------------------------------------------    
120   // H2O2 + OH-(B) -> HO2- + H2O 4.66e2 / s       
121   reactionData = new G4DNAMolecularReactionDat    
122   reactionData->AddProduct(HO2m);                 
123   reactionData->SetReactionType(7);  // Equili    
124   pReactionTable->SetReaction(reactionData);      
125   //-------------6----------------------------    
126   //------------------------------------------    
127   // O- + H2O -> OH + OH- 1.8e6 / s pka = 11.9    
128   reactionData = new G4DNAMolecularReactionDat    
129   reactionData->AddProduct(OH);                   
130   reactionData->AddProduct(OHmB);                 
131   reactionData->SetReactionType(8);  // Equili    
132   pReactionTable->SetReaction(reactionData);      
133   //------------------------------------------    
134   // OH + OH-(B) -> O- + H2O 6.24e2 / s           
135   reactionData = new G4DNAMolecularReactionDat    
136   reactionData->AddProduct(Om);                   
137   reactionData->SetReactionType(8);  // Equili    
138   pReactionTable->SetReaction(reactionData);      
139   //------------------------------------------    
140   //-------------7----------------------------    
141   // H2O2 + H2O -> H+ + HO2- First order pka =    
142   reactionData = new G4DNAMolecularReactionDat    
143   reactionData->AddProduct(HO2m);                 
144   reactionData->AddProduct(H3OpB);                
145   pReactionTable->SetReaction(reactionData);      
146                                                   
147   //------------------------------------------    
148   // HO2- + H3O+(B) -> H2O2 + H2O 4.98e3 / s      
149   reactionData = new G4DNAMolecularReactionDat    
150                                                   
151   reactionData->AddProduct(H2O2);                 
152   pReactionTable->SetReaction(reactionData);      
153                                                   
154   //-------------8----------------------------    
155   //------------------------------------------    
156   // O- + H3O+(B) -> OH + H2O 4.73e3 / s  *       
157   reactionData = new G4DNAMolecularReactionDat    
158                                                   
159   reactionData->AddProduct(OH);                   
160   pReactionTable->SetReaction(reactionData);      
161                                                   
162   //------------------------------------------    
163   // OH -> O- + H3O+(B)                           
164   reactionData = new G4DNAMolecularReactionDat    
165                                                   
166   reactionData->AddProduct(Om);                   
167   reactionData->AddProduct(H3OpB);                
168   pReactionTable->SetReaction(reactionData);      
169                                                   
170   // end Acid - Base Reactions                    
171   //------------------------------------------    
172   //  OH- + H3O+(B) -> 2H2O 1.11e4 / s            
173   reactionData = new G4DNAMolecularReactionDat    
174                                                   
175   pReactionTable->SetReaction(reactionData);      
176                                                   
177   //------------------------------------------    
178   // O3- + H3O+(B) -> OH + O2 + H2O 8.91e3 / s    
179   reactionData = new G4DNAMolecularReactionDat    
180                                                   
181   reactionData->AddProduct(OH);                   
182   reactionData->AddProduct(O2);                   
183   pReactionTable->SetReaction(reactionData);      
184   //------------------------------------------    
185   // H3O+ + OH-(B) -> 2H2O 1.11e4 / s             
186   // opposite description of OH- + H3O+(B) ->     
187   reactionData = new G4DNAMolecularReactionDat    
188                                                   
189   pReactionTable->SetReaction(reactionData);      
190                                                   
191   //------------------------------------------    
192   // O3- + H2OB -> O- + O2                        
193   reactionData = new G4DNAMolecularReactionDat    
194   reactionData->AddProduct(Om);                   
195   reactionData->AddProduct(O2);                   
196   pReactionTable->SetReaction(reactionData);      
197                                                   
198   //------------------------------------------    
199   // O(3p) + OH-(B) -> HO2- 4.16e1 / s            
200   //    reactionData = new G4DNAMolecularReact    
201   //            4.16e1 / s, O,OHmB);//            
202   //    reactionData->AddProduct(HO2m);           
203   //    pReactionTable->SetReaction(reactionDa    
204   //------------------------------------------    
205 }                                                 
206                                                   
207 //....oooOO0OOooo........oooOO0OOooo........oo    
208