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Geant4/examples/extended/medical/dna/UHDR/src/BoundedBrownianAction.cc

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Diff markup

Differences between /examples/extended/medical/dna/UHDR/src/BoundedBrownianAction.cc (Version 11.3.0) and /examples/extended/medical/dna/UHDR/src/BoundedBrownianAction.cc (Version 11.1.1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26                                                   
 27 #include "BoundedBrownianAction.hh"               
 28                                                   
 29 #include "G4DNABoundingBox.hh"                    
 30 #include "G4Molecule.hh"                          
 31 #include "G4Track.hh"                             
 32                                                   
 33 //....oooOO0OOooo........oooOO0OOooo........oo    
 34                                                   
 35 BoundedBrownianAction::BoundedBrownianAction()    
 36 //....oooOO0OOooo........oooOO0OOooo........oo    
 37                                                   
 38 G4double BoundedBrownianAction::GetDistanceToB    
 39 {                                                 
 40   if (!fpBoundingBox->contains(track.GetPositi    
 41     G4ExceptionDescription errMsg;                
 42     errMsg << "Point is out of box : " << *fpB    
 43            << " of particle : " << GetIT(track    
 44            << ") : " << track.GetPosition();      
 45     G4Exception(                                  
 46       "BoundedBrownianAction::GetDistanceToBou    
 47       "BoundedBrownianAction",                    
 48       "BoundedBrownianAction", FatalErrorInArg    
 49   }                                               
 50                                                   
 51   auto dx = std::min(track.GetPosition().getX(    
 52                      fpBoundingBox->Getxhi() -    
 53   auto dy = std::min(track.GetPosition().getY(    
 54                      fpBoundingBox->Getyhi() -    
 55   auto dz = std::min(track.GetPosition().getZ(    
 56                      fpBoundingBox->Getzhi() -    
 57   return std::min({dx, dy, dz});                  
 58 }                                                 
 59                                                   
 60 //....oooOO0OOooo........oooOO0OOooo........oo    
 61                                                   
 62 void BoundedBrownianAction::Transport(G4ThreeV    
 63 {                                                 
 64   BouncingAction(nextposition);                   
 65 }                                                 
 66                                                   
 67 //....oooOO0OOooo........oooOO0OOooo........oo    
 68                                                   
 69 void BoundedBrownianAction::BouncingAction(G4T    
 70 {                                                 
 71   // This algorithm is implemented based on Ka    
 72   //  https://doi.org/10.48550/arXiv.2006.1422    
 73   G4double RxM = fpBoundingBox->Getxhi();         
 74   G4double RyM = fpBoundingBox->Getyhi();         
 75   G4double RzM = fpBoundingBox->Getzhi();         
 76                                                   
 77   G4double Rxm = fpBoundingBox->Getxlo();         
 78   G4double Rym = fpBoundingBox->Getylo();         
 79   G4double Rzm = fpBoundingBox->Getzlo();         
 80   G4double Lx = RxM - Rxm;                        
 81   G4double Ly = RyM - Rym;                        
 82   G4double Lz = RzM - Rzm;                        
 83   G4double trunx = trunc(std::abs(nextposition    
 84   G4double truny = trunc(std::abs(nextposition    
 85   G4double trunz = trunc(std::abs(nextposition    
 86   G4double hx = std::fmod(trunx, 2);              
 87   G4double hy = std::fmod(truny, 2);              
 88   G4double hz = std::fmod(trunz, 2);              
 89   G4double x = Rxm + hx * Lx + (1 - 2 * hx) *     
 90   G4double y = Rym + hy * Ly + (1 - 2 * hy) *     
 91   G4double z = Rzm + hz * Lz + (1 - 2 * hz) *     
 92   nextposition.set(x, y, z);                      
 93 }                                                 
 94                                                   
 95 //....oooOO0OOooo........oooOO0OOooo........oo    
 96