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27 /// \file medical/DICOM/src/DicomIntersectVolu 27 /// \file medical/DICOM/src/DicomIntersectVolume.cc
28 /// \brief Implementation of the DicomIntersec 28 /// \brief Implementation of the DicomIntersectVolume class
29 // 29 //
30 30
31 #include "DicomIntersectVolume.hh" 31 #include "DicomIntersectVolume.hh"
32 32
>> 33 #include "G4UIcmdWithAString.hh"
33 #include "G4LogicalVolume.hh" 34 #include "G4LogicalVolume.hh"
34 #include "G4LogicalVolumeStore.hh" 35 #include "G4LogicalVolumeStore.hh"
35 #include "G4Material.hh" <<
36 #include "G4PVParameterised.hh" <<
37 #include "G4PhantomParameterisation.hh" <<
38 #include "G4PhysicalVolumeStore.hh" <<
39 #include "G4SystemOfUnits.hh" <<
40 #include "G4UIcmdWithAString.hh" <<
41 #include "G4UIcommand.hh" <<
42 #include "G4VPhysicalVolume.hh" 36 #include "G4VPhysicalVolume.hh"
>> 37 #include "G4PhysicalVolumeStore.hh"
43 #include "G4VSolid.hh" 38 #include "G4VSolid.hh"
44 #include "G4tgbVolume.hh" <<
45 #include "G4tgrSolid.hh" 39 #include "G4tgrSolid.hh"
>> 40 #include "G4tgbVolume.hh"
>> 41 #include "G4Material.hh"
>> 42 #include "G4PhantomParameterisation.hh"
>> 43 #include "G4PVParameterised.hh"
>> 44 #include "G4UIcommand.hh"
>> 45 #include "G4SystemOfUnits.hh"
46 46
47 //....oooOO0OOooo........oooOO0OOooo........oo 47 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
48 DicomIntersectVolume::DicomIntersectVolume() 48 DicomIntersectVolume::DicomIntersectVolume()
49 : G4UImessenger(), fG4VolumeCmd(0), fSolid(0 << 49 : G4UImessenger(),
>> 50 fG4VolumeCmd(0),
>> 51 fSolid(0),
>> 52 fPhantomMinusCorner(),
>> 53 fVoxelIsInside(0)
50 { 54 {
51 fUserVolumeCmd = new G4UIcmdWithAString("/di << 55 fUserVolumeCmd= new G4UIcmdWithAString("/dicom/intersectWithUserVolume",this);
52 fUserVolumeCmd->SetGuidance( << 56 fUserVolumeCmd->SetGuidance("Intersects a phantom with a user-defined volume "
53 "Intersects a phantom with a user-defined << 57 "and outputs the voxels that are totally inside the intersection as"
54 "and outputs the voxels that are totally i << 58 " a new phantom file. It must have the parameters: POS_X POS_Y POS_Z "
55 " a new phantom file. It must have the par << 59 "ANG_X ANG_Y ANG_Z SOLID_TYPE SOLID_PARAM_1 (SOLID_PARAM_2 ...)");
56 "ANG_X ANG_Y ANG_Z SOLID_TYPE SOLID_PARAM_ << 60 fUserVolumeCmd->SetParameterName("choice",true);
57 fUserVolumeCmd->SetParameterName("choice", t <<
58 fUserVolumeCmd->AvailableForStates(G4State_I 61 fUserVolumeCmd->AvailableForStates(G4State_Idle);
59 62
60 fG4VolumeCmd = new G4UIcmdWithAString("/dico << 63 fG4VolumeCmd = new G4UIcmdWithAString("/dicom/intersectWithUserVolume",this);
61 fG4VolumeCmd->SetGuidance( << 64 fG4VolumeCmd->SetGuidance("Intersects a phantom with a user-defined volume"
62 "Intersects a phantom with a user-defined << 65 " and outputs the voxels that are totally inside the intersection as "
63 " and outputs the voxels that are totally << 66 " a new phantom file. It must have the parameters: POS_X POS_Y POS_Z "
64 " a new phantom file. It must have the par << 67 "ANG_X ANG_Y ANG_Z SOLID_TYPE SOLID_PARAM_1 (SOLID_PARAM_2 ...)");
65 "ANG_X ANG_Y ANG_Z SOLID_TYPE SOLID_PARAM_ << 68 fG4VolumeCmd->SetParameterName("choice",true);
66 fG4VolumeCmd->SetParameterName("choice", tru <<
67 fG4VolumeCmd->AvailableForStates(G4State_Idl 69 fG4VolumeCmd->AvailableForStates(G4State_Idle);
68 } 70 }
69 71
70 //....oooOO0OOooo........oooOO0OOooo........oo 72 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
71 DicomIntersectVolume::~DicomIntersectVolume() 73 DicomIntersectVolume::~DicomIntersectVolume()
72 { 74 {
73 if (fUserVolumeCmd) delete fUserVolumeCmd; << 75 if (fUserVolumeCmd) delete fUserVolumeCmd;
74 if (fG4VolumeCmd) delete fG4VolumeCmd; << 76 if (fG4VolumeCmd) delete fG4VolumeCmd;
75 } 77 }
76 78
77 //....oooOO0OOooo........oooOO0OOooo........oo 79 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
78 void DicomIntersectVolume::SetNewValue(G4UIcom << 80 void DicomIntersectVolume::SetNewValue(G4UIcommand * command,
79 { << 81 G4String newValues)
>> 82 {
80 G4AffineTransform theVolumeTransform; 83 G4AffineTransform theVolumeTransform;
81 84
82 if (command == fUserVolumeCmd) { << 85 if (command == fUserVolumeCmd)
83 std::vector<G4String> params = GetWordsInS << 86 {
84 if (params.size() < 8) { << 87 std::vector<G4String> params = GetWordsInString( newValues );
>> 88 if( params.size() < 8 ) {
85 G4Exception("DicomIntersectVolume::SetNe 89 G4Exception("DicomIntersectVolume::SetNewValue",
86 " There must be at least 8 p << 90 " There must be at least 8 parameter: SOLID_TYPE POS_X POS_Y POS_Z "
87 "ANG_X ANG_Y ANG_Z SOLID_PAR << 91 "ANG_X ANG_Y ANG_Z SOLID_PARAM_1 (SOLID_PARAM_2 ...)",
88 FatalErrorInArgument, 92 FatalErrorInArgument,
89 G4String("Number of paramete << 93 G4String("Number of parameters given = " +
90 + G4UIcommand::Conv << 94 G4UIcommand::ConvertToString( G4int(params.size()) )).c_str());
91 .c_str()); << 95
92 } 96 }
93 97
94 //----- Build G4VSolid << 98 //----- Build G4VSolid
95 BuildUserSolid(params); 99 BuildUserSolid(params);
96 100
97 //----- Calculate volume inverse 3D transf 101 //----- Calculate volume inverse 3D transform
98 G4ThreeVector pos = G4ThreeVector(G4UIcomm << 102 G4ThreeVector pos = G4ThreeVector( G4UIcommand::ConvertToDouble(params[0]),
99 G4UIcomm << 103 G4UIcommand::ConvertToDouble(params[1]),
100 G4UIcomm << 104 G4UIcommand::ConvertToDouble(params[2]) );
101 G4RotationMatrix* rotmat = new G4RotationM 105 G4RotationMatrix* rotmat = new G4RotationMatrix;
102 std::vector<G4double> angles; << 106 std::vector<G4double> angles;
103 rotmat->rotateX(G4UIcommand::ConvertToDoub << 107 rotmat->rotateX( G4UIcommand::ConvertToDouble(params[3]) );
104 rotmat->rotateY(G4UIcommand::ConvertToDoub << 108 rotmat->rotateY( G4UIcommand::ConvertToDouble(params[4]) );
105 rotmat->rotateY(G4UIcommand::ConvertToDoub << 109 rotmat->rotateY( G4UIcommand::ConvertToDouble(params[5]) );
106 theVolumeTransform = G4AffineTransform(rot << 110 theVolumeTransform = G4AffineTransform( rotmat, pos ).Invert();
107 } << 111
108 else if (command == fG4VolumeCmd) { << 112 }
109 std::vector<G4String> params = GetWordsInS << 113 else if (command == fG4VolumeCmd)
110 if (params.size() != 1) << 114 {
111 G4Exception("DicomIntersectVolume::SetNe << 115 std::vector<G4String> params = GetWordsInString( newValues );
112 G4String("Command: " + comma << 116 if( params.size() !=1 )
113 + " " + newValues + << 117 G4Exception("DicomIntersectVolume::SetNewValue",
114 .c_str()); << 118 "",
>> 119 FatalErrorInArgument,
>> 120 G4String("Command: "+ command->GetCommandPath() +
>> 121 "/" + command->GetCommandName() +
>> 122 " " + newValues +
>> 123 " needs 1 argument: VOLUME_NAME").c_str());
115 124
116 //----- Build G4VSolid << 125 //----- Build G4VSolid
117 BuildG4Solid(params); 126 BuildG4Solid(params);
118 127
119 //----- Calculate volume inverse 3D transf 128 //----- Calculate volume inverse 3D transform
120 G4VPhysicalVolume* pv = GetPhysicalVolumes << 129 G4VPhysicalVolume* pv = GetPhysicalVolumes( params[0], 1, 1)[0];
121 << 130
122 theVolumeTransform = G4AffineTransform(pv- << 131 theVolumeTransform =
>> 132 G4AffineTransform( pv->GetFrameRotation(), pv->GetFrameTranslation() );
123 } 133 }
124 134
125 //----- Calculate relative phantom - volume << 135 //----- Calculate relative phantom - volume 3D transform
126 G4PhantomParameterisation* thePhantomParam = 136 G4PhantomParameterisation* thePhantomParam = GetPhantomParam(true);
127 << 137
128 G4RotationMatrix* rotph = new G4RotationMatr << 138 G4RotationMatrix* rotph = new G4RotationMatrix();
129 // assumes the phantom mother is not rotated << 139 // assumes the phantom mother is not rotated !!!
130 G4AffineTransform thePhantomTransform(rotph, << 140 G4AffineTransform thePhantomTransform( rotph, G4ThreeVector() );
131 // assumes the phantom mother is not transla << 141 // assumes the phantom mother is not translated !!!
132 << 142
133 G4AffineTransform theTransform = theVolumeTr << 143 G4AffineTransform theTransform = theVolumeTransform*thePhantomTransform;
134 << 144
135 G4ThreeVector axisX(1., 0., 0.); << 145 G4ThreeVector axisX( 1., 0., 0. );
136 G4ThreeVector axisY(0., 1., 0.); << 146 G4ThreeVector axisY( 0., 1., 0. );
137 G4ThreeVector axisZ(0., 0., 1.); << 147 G4ThreeVector axisZ( 0., 0., 1. );
138 theTransform.ApplyAxisTransform(axisX); 148 theTransform.ApplyAxisTransform(axisX);
139 theTransform.ApplyAxisTransform(axisY); 149 theTransform.ApplyAxisTransform(axisY);
140 theTransform.ApplyAxisTransform(axisZ); 150 theTransform.ApplyAxisTransform(axisZ);
141 << 151
142 //----- Write phantom header 152 //----- Write phantom header
143 G4String thePhantomFileName = "phantom.g4pdc 153 G4String thePhantomFileName = "phantom.g4pdcm";
144 fout.open(thePhantomFileName); 154 fout.open(thePhantomFileName);
145 std::vector<G4Material*> materials = thePhan 155 std::vector<G4Material*> materials = thePhantomParam->GetMaterials();
146 fout << materials.size() << G4endl; 156 fout << materials.size() << G4endl;
147 for (unsigned int ii = 0; ii < materials.siz << 157 for( unsigned int ii = 0; ii < materials.size(); ++ii )
>> 158 {
148 fout << ii << " " << materials[ii]->GetNam 159 fout << ii << " " << materials[ii]->GetName() << G4endl;
149 } 160 }
150 161
151 //----- Loop to pantom voxels 162 //----- Loop to pantom voxels
152 G4int nx = G4int(thePhantomParam->GetNoVoxel 163 G4int nx = G4int(thePhantomParam->GetNoVoxelsX());
153 G4int ny = G4int(thePhantomParam->GetNoVoxel 164 G4int ny = G4int(thePhantomParam->GetNoVoxelsY());
154 G4int nz = G4int(thePhantomParam->GetNoVoxel 165 G4int nz = G4int(thePhantomParam->GetNoVoxelsZ());
155 G4int nxy = nx * ny; << 166 G4int nxy = nx*ny;
156 fVoxelIsInside = new G4bool[nx * ny * nz]; << 167 fVoxelIsInside = new G4bool[nx*ny*nz];
157 G4double voxelHalfWidthX = thePhantomParam-> 168 G4double voxelHalfWidthX = thePhantomParam->GetVoxelHalfX();
158 G4double voxelHalfWidthY = thePhantomParam-> 169 G4double voxelHalfWidthY = thePhantomParam->GetVoxelHalfY();
159 G4double voxelHalfWidthZ = thePhantomParam-> 170 G4double voxelHalfWidthZ = thePhantomParam->GetVoxelHalfZ();
160 171
161 //----- Write phantom dimensions and limits 172 //----- Write phantom dimensions and limits
162 fout << nx << " " << ny << " " << nz << G4en 173 fout << nx << " " << ny << " " << nz << G4endl;
163 fout << -voxelHalfWidthX * nx + thePhantomTr << 174 fout << -voxelHalfWidthX*nx+thePhantomTransform.NetTranslation().x() << " "
164 << voxelHalfWidthX * nx + thePhantomTra << 175 << voxelHalfWidthX*nx+thePhantomTransform.NetTranslation().x() << G4endl;
165 fout << -voxelHalfWidthY * ny + thePhantomTr << 176 fout << -voxelHalfWidthY*ny+thePhantomTransform.NetTranslation().y() << " "
166 << voxelHalfWidthY * ny + thePhantomTra << 177 << voxelHalfWidthY*ny+thePhantomTransform.NetTranslation().y() << G4endl;
167 fout << -voxelHalfWidthZ * nz + thePhantomTr << 178 fout << -voxelHalfWidthZ*nz+thePhantomTransform.NetTranslation().z() << " "
168 << voxelHalfWidthZ * nz + thePhantomTra << 179 << voxelHalfWidthZ*nz+thePhantomTransform.NetTranslation().z() << G4endl;
>> 180
>> 181 for( G4int iz = 0; iz < nz; ++iz ){
>> 182 for( G4int iy = 0; iy < ny; ++iy) {
169 183
170 for (G4int iz = 0; iz < nz; ++iz) { <<
171 for (G4int iy = 0; iy < ny; ++iy) { <<
172 G4bool bPrevVoxelInside = true; 184 G4bool bPrevVoxelInside = true;
173 G4bool b1VoxelFoundInside = false; 185 G4bool b1VoxelFoundInside = false;
174 G4int firstVoxel = -1; 186 G4int firstVoxel = -1;
175 G4int lastVoxel = -1; 187 G4int lastVoxel = -1;
176 for (G4int ix = 0; ix < nx; ++ix) { << 188 for(G4int ix = 0; ix < nx; ++ix ){
177 G4ThreeVector voxelCentre((-nx + ix * << 189 G4ThreeVector voxelCentre( (-nx+ix*2+1)*voxelHalfWidthX,
178 (-ny + iy * << 190 (-ny+iy*2+1)*voxelHalfWidthY, (-nz+iz*2+1)*voxelHalfWidthZ);
179 (-nz + iz * <<
180 theTransform.ApplyPointTransform(voxel 191 theTransform.ApplyPointTransform(voxelCentre);
181 G4bool bVoxelIsInside = true; 192 G4bool bVoxelIsInside = true;
182 for (G4int ivx = -1; ivx <= 1; ivx += << 193 for( G4int ivx = -1; ivx <= 1; ivx+=2 ) {
183 for (G4int ivy = -1; ivy <= 1; ivy + << 194 for( G4int ivy = -1; ivy <= 1; ivy+=2 ){
184 for (G4int ivz = -1; ivz <= 1; ivz << 195 for( G4int ivz = -1; ivz <= 1; ivz+=2 ) {
185 G4ThreeVector voxelPoint = voxel << 196 G4ThreeVector voxelPoint = voxelCentre
186 + ivy << 197 + ivx*voxelHalfWidthX*axisX +
187 + ivz << 198 ivy*voxelHalfWidthY*axisY + ivz*voxelHalfWidthZ*axisZ;
188 if (fSolid->Inside(voxelPoint) = << 199 if( fSolid->Inside( voxelPoint ) == kOutside ) {
189 bVoxelIsInside = false; 200 bVoxelIsInside = false;
190 break; 201 break;
191 } << 202 } else {
192 else { <<
193 } 203 }
194 } 204 }
195 if (!bVoxelIsInside) break; << 205 if( !bVoxelIsInside ) break;
196 } 206 }
197 if (!bVoxelIsInside) break; << 207 if( !bVoxelIsInside ) break;
198 } 208 }
199 209
200 G4int copyNo = ix + nx * iy + nxy * iz << 210 G4int copyNo = ix + nx*iy + nxy*iz;
201 if (bVoxelIsInside) { << 211 if( bVoxelIsInside ) {
202 if (!bPrevVoxelInside) { << 212 if( !bPrevVoxelInside ) {
203 G4Exception("DicomIntersectVolume: << 213 G4Exception("DicomIntersectVolume::SetNewValue",
204 "Volume cannot interse << 214 "",
205 "please use other voxe << 215 FatalException,
>> 216 "Volume cannot intersect phantom in discontiguous voxels, "
>> 217 "please use other voxel");
206 } 218 }
207 if (!b1VoxelFoundInside) { << 219 if( !b1VoxelFoundInside ) {
208 firstVoxel = ix; 220 firstVoxel = ix;
209 b1VoxelFoundInside = true; 221 b1VoxelFoundInside = true;
210 } 222 }
211 lastVoxel = ix; 223 lastVoxel = ix;
212 fVoxelIsInside[copyNo] = true; 224 fVoxelIsInside[copyNo] = true;
213 } << 225 } else {
214 else { <<
215 fVoxelIsInside[copyNo] = false; 226 fVoxelIsInside[copyNo] = false;
216 } 227 }
>> 228
217 } 229 }
218 fout << firstVoxel << " " << lastVoxel < 230 fout << firstVoxel << " " << lastVoxel << G4endl;
219 } 231 }
220 } 232 }
221 233
222 //----- Now write the materials 234 //----- Now write the materials
223 for (G4int iz = 0; iz < nz; ++iz) { << 235 for( G4int iz = 0; iz < nz; ++iz ){
224 for (G4int iy = 0; iy < ny; ++iy) { << 236 for( G4int iy = 0; iy < ny; ++iy) {
225 G4bool b1xFound = false; << 237 G4bool b1xFound = false;
226 for (G4int ix = 0; ix < nx; ++ix) { << 238 for(G4int ix = 0; ix < nx; ++ix ){
227 size_t copyNo = ix + ny * iy + nxy * i << 239 size_t copyNo = ix + ny*iy + nxy*iz;
228 if (fVoxelIsInside[copyNo]) { << 240 if( fVoxelIsInside[copyNo] ) {
229 fout << thePhantomParam->GetMaterial << 241 fout << thePhantomParam->GetMaterialIndex(copyNo)<< " ";
230 b1xFound = true; 242 b1xFound = true;
231 } 243 }
232 } 244 }
233 if (b1xFound) fout << G4endl; << 245 if(b1xFound ) fout << G4endl;
234 } 246 }
235 } 247 }
236 248
237 // Now write densities 249 // Now write densities
238 for (G4int iz = 0; iz < nz; ++iz) { << 250 for( G4int iz = 0; iz < nz; ++iz ){
239 for (G4int iy = 0; iy < ny; ++iy) { << 251 for( G4int iy = 0; iy < ny; ++iy) {
240 G4bool b1xFound = false; << 252 G4bool b1xFound = false;
241 for (G4int ix = 0; ix < nx; ++ix) { << 253 for(G4int ix = 0; ix < nx; ++ix ){
242 size_t copyNo = ix + ny * iy + nxy * i << 254 size_t copyNo = ix + ny*iy + nxy*iz;
243 if (fVoxelIsInside[copyNo]) { << 255 if( fVoxelIsInside[copyNo] ) {
244 fout << thePhantomParam->GetMaterial << 256 fout <<thePhantomParam->GetMaterial(copyNo)->GetDensity()/g*cm3<< " ";
245 b1xFound = true; 257 b1xFound = true;
246 } 258 }
247 } 259 }
248 if (b1xFound) fout << G4endl; << 260 if(b1xFound ) fout << G4endl;
249 } 261 }
250 } 262 }
251 } << 263
>> 264 }
252 265
253 //....oooOO0OOooo........oooOO0OOooo........oo 266 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
254 void DicomIntersectVolume::BuildUserSolid(std: << 267 void DicomIntersectVolume::BuildUserSolid( std::vector<G4String> params )
255 { 268 {
256 for (G4int ii = 0; ii < 6; ++ii) << 269 for( G4int ii = 0; ii < 6; ++ii ) params.erase( params.begin() );
257 params.erase(params.begin()); <<
258 // take otu position and rotation angles 270 // take otu position and rotation angles
259 params.insert(params.begin(), ":SOLID"); << 271 params.insert( params.begin(), ":SOLID");
260 params.insert(params.begin(), params[1]); << 272 params.insert( params.begin(), params[1] );
261 G4tgrSolid* tgrSolid = new G4tgrSolid(params 273 G4tgrSolid* tgrSolid = new G4tgrSolid(params);
262 G4tgbVolume* tgbVolume = new G4tgbVolume(); << 274 G4tgbVolume* tgbVolume = new G4tgbVolume();
263 fSolid = tgbVolume->FindOrConstructG4Solid(t << 275 fSolid = tgbVolume->FindOrConstructG4Solid( tgrSolid );
>> 276
264 } 277 }
265 278
266 //....oooOO0OOooo........oooOO0OOooo........oo 279 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
267 void DicomIntersectVolume::BuildG4Solid(std::v << 280 void DicomIntersectVolume::BuildG4Solid( std::vector<G4String> params )
268 { 281 {
269 fSolid = GetLogicalVolumes(params[0], 1, 1)[ << 282 fSolid = GetLogicalVolumes( params[0], 1, 1)[0]->GetSolid();
>> 283
270 } 284 }
271 285
272 //....oooOO0OOooo........oooOO0OOooo........oo 286 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
273 G4PhantomParameterisation* DicomIntersectVolum << 287 G4PhantomParameterisation*
>> 288 DicomIntersectVolume::GetPhantomParam(G4bool bMustExist)
274 { 289 {
275 G4PhantomParameterisation* paramreg = 0; 290 G4PhantomParameterisation* paramreg = 0;
276 291
277 G4PhysicalVolumeStore* pvs = G4PhysicalVolum 292 G4PhysicalVolumeStore* pvs = G4PhysicalVolumeStore::GetInstance();
278 for (auto cite = pvs->cbegin(); cite != pvs- << 293 for( auto cite = pvs->cbegin(); cite != pvs->cend(); ++cite )
279 if (IsPhantomVolume(*cite)) { << 294 {
280 const G4PVParameterised* pvparam = stati << 295 if( IsPhantomVolume( *cite ) ) {
>> 296 const G4PVParameterised* pvparam =
>> 297 static_cast<const G4PVParameterised*>(*cite);
281 G4VPVParameterisation* param = pvparam-> 298 G4VPVParameterisation* param = pvparam->GetParameterisation();
282 // if( static_cast<const G4PhantomPar 299 // if( static_cast<const G4PhantomParameterisation*>(param) ){
283 // if( static_cast<const G4PhantomPar 300 // if( static_cast<const G4PhantomParameterisation*>(param) ){
284 // G4cout << "G4PhantomParameterisa 301 // G4cout << "G4PhantomParameterisation volume found "
285 // << (*cite)->GetName() << G4endl; 302 // << (*cite)->GetName() << G4endl;
286 paramreg = static_cast<G4PhantomParamete 303 paramreg = static_cast<G4PhantomParameterisation*>(param);
287 } 304 }
288 } 305 }
289 << 306
290 if (!paramreg && bMustExist) << 307 if( !paramreg && bMustExist )
291 G4Exception("DicomIntersectVolume::GetPhan << 308 G4Exception("DicomIntersectVolume::GetPhantomParam",
>> 309 "",
>> 310 FatalErrorInArgument,
292 " No G4PhantomParameterisation 311 " No G4PhantomParameterisation found ");
293 << 312
294 return paramreg; 313 return paramreg;
>> 314
295 } 315 }
296 316
297 //....oooOO0OOooo........oooOO0OOooo........oo 317 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
298 std::vector<G4VPhysicalVolume*> DicomIntersect << 318 std::vector<G4VPhysicalVolume*> DicomIntersectVolume::GetPhysicalVolumes(
299 << 319 const G4String& name, G4bool exists, G4int nVols )
300 { 320 {
301 std::vector<G4VPhysicalVolume*> vvolu; 321 std::vector<G4VPhysicalVolume*> vvolu;
302 std::string::size_type ial = name.rfind(":") 322 std::string::size_type ial = name.rfind(":");
303 G4String volname = ""; 323 G4String volname = "";
304 G4int volcopy = 0; 324 G4int volcopy = 0;
305 if (ial != std::string::npos) { << 325 if( ial != std::string::npos )
306 std::string::size_type ial2 = name.rfind(" << 326 {
307 if (ial2 != std::string::npos) { << 327 std::string::size_type ial2 = name.rfind(":",ial-1);
308 G4Exception("DicomIntersectVolume::GetPh << 328 if( ial2 != std::string::npos )
>> 329 {
>> 330 G4Exception("DicomIntersectVolume::GetPhysicalVolumes",
>> 331 "",
>> 332 FatalErrorInArgument,
309 G4String("Name corresponds t 333 G4String("Name corresponds to a touchable " + name).c_str());
310 } 334 }
311 else { << 335 else
312 volname = name.substr(0, ial); << 336 {
313 volcopy = G4UIcommand::ConvertToInt(name << 337 volname = name.substr( 0, ial );
>> 338 volcopy = G4UIcommand::ConvertToInt( name.substr(ial+1, name.length()).c_str() );
314 } 339 }
315 } 340 }
316 else { << 341 else
>> 342 {
317 volname = name; 343 volname = name;
318 volcopy = -1; 344 volcopy = -1;
319 } 345 }
320 346
321 G4PhysicalVolumeStore* pvs = G4PhysicalVolum 347 G4PhysicalVolumeStore* pvs = G4PhysicalVolumeStore::GetInstance();
322 for (auto citepv = pvs->cbegin(); citepv != << 348 for( auto citepv = pvs->cbegin(); citepv != pvs->cend(); ++citepv )
323 if (volname == (*citepv)->GetName() && ((* << 349 {
324 vvolu.push_back(*citepv); << 350 if( volname == (*citepv)->GetName()
>> 351 && ( (*citepv)->GetCopyNo() == volcopy || -1 == volcopy ) )
>> 352 {
>> 353 vvolu.push_back( *citepv );
325 } 354 }
326 } 355 }
327 << 356
328 //----- Check that at least one volume was f 357 //----- Check that at least one volume was found
329 if (vvolu.size() == 0) { << 358 if( vvolu.size() == 0 ) {
330 if (exists) { << 359 if(exists) {
331 G4Exception(" DicomIntersectVolume::GetP << 360 G4Exception(" DicomIntersectVolume::GetPhysicalVolumes",
332 G4String("No physical volume << 361 "",
333 } << 362 FatalErrorInArgument,
334 else { << 363 G4String("No physical volume found with name " + name).c_str());
335 G4cerr << "!!WARNING: DicomIntersectVolu << 364 } else {
336 << " no physical volume found wit << 365 G4cerr << "!!WARNING: DicomIntersectVolume::GetPhysicalVolumes: "<<
>> 366 " no physical volume found with name " << name << G4endl;
337 } 367 }
338 } 368 }
339 369
340 if (nVols != -1 && G4int(vvolu.size()) != nV << 370 if( nVols != -1 && G4int(vvolu.size()) != nVols ) {
341 G4Exception("DicomIntersectVolume::GetLogi 371 G4Exception("DicomIntersectVolume::GetLogicalVolumes:",
342 "Wrong number of physical volu << 372 "Wrong number of physical volumes found",
343 ("Number of physical volumes " << 373 FatalErrorInArgument,
344 + ", requesting " + G4UIcomma << 374 ("Number of physical volumes " +
345 .c_str()); << 375 G4UIcommand::ConvertToString(G4int(vvolu.size())) +
346 } << 376 ", requesting " + G4UIcommand::ConvertToString(nVols)).c_str());
>> 377 }
347 378
348 return vvolu; 379 return vvolu;
349 } 380 }
350 381
351 //....oooOO0OOooo........oooOO0OOooo........oo 382 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
352 G4bool DicomIntersectVolume::IsPhantomVolume(G << 383 G4bool DicomIntersectVolume::IsPhantomVolume( G4VPhysicalVolume* pv )
353 { 384 {
354 EAxis axis; 385 EAxis axis;
355 G4int nReplicas; 386 G4int nReplicas;
356 G4double width, offset; << 387 G4double width,offset;
357 G4bool consuming; 388 G4bool consuming;
358 pv->GetReplicationData(axis, nReplicas, widt << 389 pv->GetReplicationData(axis,nReplicas,width,offset,consuming);
359 EVolume type = (consuming) ? kReplica : kPar 390 EVolume type = (consuming) ? kReplica : kParameterised;
360 if (type == kParameterised && pv->GetRegular << 391 if( type == kParameterised && pv->GetRegularStructureId() == 1 ) {
361 return TRUE; 392 return TRUE;
362 } << 393 } else {
363 else { <<
364 return FALSE; 394 return FALSE;
365 } 395 }
366 } << 396
>> 397 }
367 398
368 //....oooOO0OOooo........oooOO0OOooo........oo 399 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
369 std::vector<G4LogicalVolume*> DicomIntersectVo << 400 std::vector<G4LogicalVolume*> DicomIntersectVolume::GetLogicalVolumes(
370 << 401 const G4String& name, G4bool exists, G4int nVols )
371 { 402 {
372 // G4cout << "GetLogicalVolumes " << name < 403 // G4cout << "GetLogicalVolumes " << name << " " << exists << G4endl;
373 std::vector<G4LogicalVolume*> vvolu; 404 std::vector<G4LogicalVolume*> vvolu;
374 G4int ial = G4int(name.rfind(":")); 405 G4int ial = G4int(name.rfind(":"));
375 if (ial != -1) { << 406 if( ial != -1 ) {
376 G4Exception("DicomIntersectVolume::GetLogi << 407 G4Exception("DicomIntersectVolume::GetLogicalVolumes",
377 G4String("Name corresponds to << 408 "",
>> 409 FatalErrorInArgument,
>> 410 G4String("Name corresponds to a touchable or physcal volume"
>> 411 + name).c_str());
378 } 412 }
379 413
380 G4LogicalVolumeStore* lvs = G4LogicalVolumeS 414 G4LogicalVolumeStore* lvs = G4LogicalVolumeStore::GetInstance();
381 for (auto citelv = lvs->cbegin(); citelv != << 415 for( auto citelv = lvs->cbegin(); citelv != lvs->cend(); ++citelv )
382 if (name == (*citelv)->GetName()) { << 416 {
383 vvolu.push_back(*citelv); << 417 if( name == (*citelv)->GetName() ) {
>> 418 vvolu.push_back( *citelv );
384 } 419 }
385 } 420 }
386 << 421
387 //----- Check that at least one volume was f 422 //----- Check that at least one volume was found
388 if (vvolu.size() == 0) { << 423 if( vvolu.size() == 0 ) {
389 if (exists) { << 424 if(exists) {
390 G4Exception("DicomIntersectVolume::GetLo << 425 G4Exception("DicomIntersectVolume::GetLogicalVolumes:","",
391 ("no logical volume found wi << 426 FatalErrorInArgument,("no logical volume found with name "
392 } << 427 + name).c_str());
393 else { << 428 } else {
394 G4Exception("DicomIntersectVolume::GetLo << 429 G4Exception("DicomIntersectVolume::GetLogicalVolumes:","",
395 ("no logical volume found w << 430 JustWarning,("no logical volume found with name " + name).c_str());
396 } 431 }
397 } 432 }
398 433
399 if (nVols != -1 && G4int(vvolu.size()) != nV << 434 if( nVols != -1 && G4int(vvolu.size()) != nVols ) {
400 G4Exception("DicomIntersectVolume::GetLogi << 435 G4Exception("DicomIntersectVolume::GetLogicalVolumes:",
>> 436 "Wrong number of logical volumes found",
401 FatalErrorInArgument, 437 FatalErrorInArgument,
402 ("Number of logical volumes " << 438 ("Number of logical volumes " +
403 + ", requesting " + G4UIcomma << 439 G4UIcommand::ConvertToString(G4int(vvolu.size())) +
404 .c_str()); << 440 ", requesting " + G4UIcommand::ConvertToString(nVols)).c_str());
405 } << 441 }
406 442
407 return vvolu; 443 return vvolu;
>> 444
408 } 445 }
409 446
410 //....oooOO0OOooo........oooOO0OOooo........oo 447 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
411 std::vector<G4String> DicomIntersectVolume::Ge << 448 std::vector<G4String> DicomIntersectVolume::GetWordsInString(
>> 449 const G4String& stemp)
412 { 450 {
413 std::vector<G4String> wordlist; 451 std::vector<G4String> wordlist;
414 452
415 //---------- Read a line of file: 453 //---------- Read a line of file:
416 //----- Clear wordlist 454 //----- Clear wordlist
417 G4int ii; 455 G4int ii;
418 const char* cstr = stemp.c_str(); 456 const char* cstr = stemp.c_str();
419 G4int siz = G4int(stemp.length()); 457 G4int siz = G4int(stemp.length());
420 G4int istart = 0; 458 G4int istart = 0;
421 G4int nQuotes = 0; 459 G4int nQuotes = 0;
422 G4bool lastIsBlank = false; 460 G4bool lastIsBlank = false;
423 G4bool lastIsQuote = false; 461 G4bool lastIsQuote = false;
424 for (ii = 0; ii < siz; ++ii) { << 462 for( ii = 0; ii < siz; ++ii )
425 if (cstr[ii] == '\"') { << 463 {
426 if (lastIsQuote) { << 464 if(cstr[ii] == '\"' ){
427 G4Exception("GmGenUtils:GetWordsFromSt << 465 if( lastIsQuote ){
428 ("There cannot be two quot << 466 G4Exception("GmGenUtils:GetWordsFromString","",FatalException,
>> 467 ("There cannot be two quotes together " + stemp).c_str() );
429 } 468 }
430 if (nQuotes % 2 == 1) { << 469 if( nQuotes%2 == 1 ){
431 // close word << 470 //close word
432 wordlist.push_back(stemp.substr(istart << 471 wordlist.push_back( stemp.substr(istart,ii-istart) );
433 // G4cout << "GetWordsInString << 472 // G4cout << "GetWordsInString new word0 "
434 //<< wordlist[wordlist.size()-1] << " << 473 //<< wordlist[wordlist.size()-1] << " istart " << istart
435 //<< " ii " << ii << G4endl; 474 //<< " ii " << ii << G4endl;
436 } << 475 } else {
437 else { << 476 istart = ii+1;
438 istart = ii + 1; <<
439 } 477 }
440 ++nQuotes; 478 ++nQuotes;
441 lastIsQuote = true; 479 lastIsQuote = true;
442 lastIsBlank = false; 480 lastIsBlank = false;
443 } << 481 } else if(cstr[ii] == ' ' ){
444 else if (cstr[ii] == ' ') { << 482 // G4cout << "GetWordsInString blank nQuotes "
445 // G4cout << "GetWordsInStrin <<
446 //<< nQuotes << " lastIsBlank " << lastI 483 //<< nQuotes << " lastIsBlank " << lastIsBlank << G4endl;
447 if (nQuotes % 2 == 0) { << 484 if( nQuotes%2 == 0 ){
448 if (!lastIsBlank && !lastIsQuote) { << 485 if( !lastIsBlank && !lastIsQuote ) {
449 wordlist.push_back(stemp.substr(ista << 486 wordlist.push_back( stemp.substr(istart,ii-istart) );
450 // G4cout << "GetWordsInStr << 487 // G4cout << "GetWordsInString new word1 "
451 //<< wordlist[wordlist.size()-1] << << 488 //<< wordlist[wordlist.size()-1] << " lastIsBlank "
452 //<< lastIsBlank << G4endl; 489 //<< lastIsBlank << G4endl;
453 } 490 }
454 491
455 istart = ii + 1; << 492 istart = ii+1;
456 lastIsQuote = false; 493 lastIsQuote = false;
457 lastIsBlank = true; 494 lastIsBlank = true;
458 } 495 }
459 } << 496 } else {
460 else { << 497 if( ii == siz-1 ) {
461 if (ii == siz - 1) { << 498 wordlist.push_back( stemp.substr(istart,ii-istart+1) );
462 wordlist.push_back(stemp.substr(istart << 499 // G4cout << "GetWordsInString new word2 "
463 // G4cout << "GetWordsI << 500 //<< wordlist[wordlist.size()-1] << " istart " << istart << G4endl;
464 //<< wordlist[wordlist.size()-1] << " <<
465 } 501 }
466 lastIsQuote = false; 502 lastIsQuote = false;
467 lastIsBlank = false; 503 lastIsBlank = false;
468 } 504 }
469 } 505 }
470 if (nQuotes % 2 == 1) { << 506 if( nQuotes%2 == 1 ) {
471 G4Exception("GmGenUtils:GetWordsFromString << 507 G4Exception("GmGenUtils:GetWordsFromString","",FatalException,
472 ("unbalanced quotes in line " << 508 ("unbalanced quotes in line " + stemp).c_str() );
473 } 509 }
474 510
475 return wordlist; 511 return wordlist;
476 } 512 }
477 513