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25 // 25 //
>> 26 // $Id: DicomIntersectVolume.cc 92820 2015-09-17 15:22:14Z gcosmo $
26 // 27 //
27 /// \file medical/DICOM/src/DicomIntersectVolu 28 /// \file medical/DICOM/src/DicomIntersectVolume.cc
28 /// \brief Implementation of the DicomIntersec 29 /// \brief Implementation of the DicomIntersectVolume class
29 // 30 //
30 31
31 #include "DicomIntersectVolume.hh" 32 #include "DicomIntersectVolume.hh"
32 33
>> 34 #include "G4UIcmdWithAString.hh"
33 #include "G4LogicalVolume.hh" 35 #include "G4LogicalVolume.hh"
34 #include "G4LogicalVolumeStore.hh" 36 #include "G4LogicalVolumeStore.hh"
35 #include "G4Material.hh" <<
36 #include "G4PVParameterised.hh" <<
37 #include "G4PhantomParameterisation.hh" <<
38 #include "G4PhysicalVolumeStore.hh" <<
39 #include "G4SystemOfUnits.hh" <<
40 #include "G4UIcmdWithAString.hh" <<
41 #include "G4UIcommand.hh" <<
42 #include "G4VPhysicalVolume.hh" 37 #include "G4VPhysicalVolume.hh"
>> 38 #include "G4PhysicalVolumeStore.hh"
43 #include "G4VSolid.hh" 39 #include "G4VSolid.hh"
44 #include "G4tgbVolume.hh" <<
45 #include "G4tgrSolid.hh" 40 #include "G4tgrSolid.hh"
>> 41 #include "G4tgbVolume.hh"
>> 42 #include "G4Material.hh"
>> 43 #include "G4PhantomParameterisation.hh"
>> 44 #include "G4PVParameterised.hh"
>> 45 #include "G4UIcommand.hh"
>> 46 #include "G4SystemOfUnits.hh"
46 47
47 //....oooOO0OOooo........oooOO0OOooo........oo 48 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
48 DicomIntersectVolume::DicomIntersectVolume() 49 DicomIntersectVolume::DicomIntersectVolume()
49 : G4UImessenger(), fG4VolumeCmd(0), fSolid(0 << 50 : G4UImessenger(),
>> 51 fG4VolumeCmd(0),
>> 52 fSolid(0),
>> 53 fPhantomMinusCorner(),
>> 54 fVoxelIsInside(0)
50 { 55 {
51 fUserVolumeCmd = new G4UIcmdWithAString("/di << 56 fUserVolumeCmd= new G4UIcmdWithAString("/dicom/intersectWithUserVolume",this);
52 fUserVolumeCmd->SetGuidance( << 57 fUserVolumeCmd->SetGuidance("Intersects a phantom with a user-defined volume "
53 "Intersects a phantom with a user-defined << 58 "and outputs the voxels that are totally inside the intersection as"
54 "and outputs the voxels that are totally i << 59 " a new phantom file. It must have the parameters: POS_X POS_Y POS_Z "
55 " a new phantom file. It must have the par << 60 "ANG_X ANG_Y ANG_Z SOLID_TYPE SOLID_PARAM_1 (SOLID_PARAM_2 ...)");
56 "ANG_X ANG_Y ANG_Z SOLID_TYPE SOLID_PARAM_ << 61 fUserVolumeCmd->SetParameterName("choice",true);
57 fUserVolumeCmd->SetParameterName("choice", t <<
58 fUserVolumeCmd->AvailableForStates(G4State_I 62 fUserVolumeCmd->AvailableForStates(G4State_Idle);
59 63
60 fG4VolumeCmd = new G4UIcmdWithAString("/dico << 64 fG4VolumeCmd = new G4UIcmdWithAString("/dicom/intersectWithUserVolume",this);
61 fG4VolumeCmd->SetGuidance( << 65 fG4VolumeCmd->SetGuidance("Intersects a phantom with a user-defined volume"
62 "Intersects a phantom with a user-defined << 66 " and outputs the voxels that are totally inside the intersection as "
63 " and outputs the voxels that are totally << 67 " a new phantom file. It must have the parameters: POS_X POS_Y POS_Z "
64 " a new phantom file. It must have the par << 68 "ANG_X ANG_Y ANG_Z SOLID_TYPE SOLID_PARAM_1 (SOLID_PARAM_2 ...)");
65 "ANG_X ANG_Y ANG_Z SOLID_TYPE SOLID_PARAM_ << 69 fG4VolumeCmd->SetParameterName("choice",true);
66 fG4VolumeCmd->SetParameterName("choice", tru <<
67 fG4VolumeCmd->AvailableForStates(G4State_Idl 70 fG4VolumeCmd->AvailableForStates(G4State_Idle);
68 } 71 }
69 72
70 //....oooOO0OOooo........oooOO0OOooo........oo 73 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
71 DicomIntersectVolume::~DicomIntersectVolume() 74 DicomIntersectVolume::~DicomIntersectVolume()
72 { 75 {
73 if (fUserVolumeCmd) delete fUserVolumeCmd; << 76 if (fUserVolumeCmd) delete fUserVolumeCmd;
74 if (fG4VolumeCmd) delete fG4VolumeCmd; << 77 if (fG4VolumeCmd) delete fG4VolumeCmd;
75 } 78 }
76 79
77 //....oooOO0OOooo........oooOO0OOooo........oo 80 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
78 void DicomIntersectVolume::SetNewValue(G4UIcom << 81 void DicomIntersectVolume::SetNewValue(G4UIcommand * command,
79 { << 82 G4String newValues)
>> 83 {
80 G4AffineTransform theVolumeTransform; 84 G4AffineTransform theVolumeTransform;
81 85
82 if (command == fUserVolumeCmd) { 86 if (command == fUserVolumeCmd) {
83 std::vector<G4String> params = GetWordsInS << 87
84 if (params.size() < 8) { << 88 std::vector<G4String> params = GetWordsInString( newValues );
>> 89 if( params.size() < 8 ) {
85 G4Exception("DicomIntersectVolume::SetNe 90 G4Exception("DicomIntersectVolume::SetNewValue",
86 " There must be at least 8 p << 91 " There must be at least 8 parameter: SOLID_TYPE POS_X POS_Y POS_Z "
87 "ANG_X ANG_Y ANG_Z SOLID_PAR << 92 "ANG_X ANG_Y ANG_Z SOLID_PARAM_1 (SOLID_PARAM_2 ...)",
88 FatalErrorInArgument, 93 FatalErrorInArgument,
89 G4String("Number of paramete << 94 G4String("Number of parameters given = " +
90 + G4UIcommand::Conv << 95 G4UIcommand::ConvertToString( G4int(params.size()) )).c_str());
91 .c_str()); << 96
92 } 97 }
93 98
94 //----- Build G4VSolid << 99 //----- Build G4VSolid
95 BuildUserSolid(params); 100 BuildUserSolid(params);
96 101
97 //----- Calculate volume inverse 3D transf 102 //----- Calculate volume inverse 3D transform
98 G4ThreeVector pos = G4ThreeVector(G4UIcomm << 103 G4ThreeVector pos = G4ThreeVector( G4UIcommand::ConvertToDouble(params[0]),
99 G4UIcomm << 104 G4UIcommand::ConvertToDouble(params[1]),
100 G4UIcomm << 105 G4UIcommand::ConvertToDouble(params[2]) );
101 G4RotationMatrix* rotmat = new G4RotationM 106 G4RotationMatrix* rotmat = new G4RotationMatrix;
102 std::vector<G4double> angles; << 107 std::vector<double> angles;
103 rotmat->rotateX(G4UIcommand::ConvertToDoub << 108 rotmat->rotateX( G4UIcommand::ConvertToDouble(params[3]) );
104 rotmat->rotateY(G4UIcommand::ConvertToDoub << 109 rotmat->rotateY( G4UIcommand::ConvertToDouble(params[4]) );
105 rotmat->rotateY(G4UIcommand::ConvertToDoub << 110 rotmat->rotateY( G4UIcommand::ConvertToDouble(params[5]) );
106 theVolumeTransform = G4AffineTransform(rot << 111 theVolumeTransform = G4AffineTransform( rotmat, pos ).Invert();
107 } << 112
108 else if (command == fG4VolumeCmd) { << 113 } else if (command == fG4VolumeCmd) {
109 std::vector<G4String> params = GetWordsInS << 114 std::vector<G4String> params = GetWordsInString( newValues );
110 if (params.size() != 1) << 115 if( params.size() !=1 )
111 G4Exception("DicomIntersectVolume::SetNe << 116 G4Exception("DicomIntersectVolume::SetNewValue",
112 G4String("Command: " + comma << 117 "",
113 + " " + newValues + << 118 FatalErrorInArgument,
114 .c_str()); << 119 G4String("Command: "+ command->GetCommandPath() +
>> 120 "/" + command->GetCommandName() +
>> 121 " " + newValues +
>> 122 " needs 1 argument: VOLUME_NAME").c_str());
115 123
116 //----- Build G4VSolid << 124 //----- Build G4VSolid
117 BuildG4Solid(params); 125 BuildG4Solid(params);
118 126
119 //----- Calculate volume inverse 3D transf 127 //----- Calculate volume inverse 3D transform
120 G4VPhysicalVolume* pv = GetPhysicalVolumes << 128 G4VPhysicalVolume* pv = GetPhysicalVolumes( params[0], 1, 1)[0];
121 << 129
122 theVolumeTransform = G4AffineTransform(pv- << 130 theVolumeTransform =
>> 131 G4AffineTransform( pv->GetFrameRotation(), pv->GetFrameTranslation() );
123 } 132 }
124 133
125 //----- Calculate relative phantom - volume << 134 //----- Calculate relative phantom - volume 3D transform
126 G4PhantomParameterisation* thePhantomParam = 135 G4PhantomParameterisation* thePhantomParam = GetPhantomParam(true);
127 << 136
128 G4RotationMatrix* rotph = new G4RotationMatr << 137 G4RotationMatrix* rotph = new G4RotationMatrix();
129 // assumes the phantom mother is not rotated << 138 // assumes the phantom mother is not rotated !!!
130 G4AffineTransform thePhantomTransform(rotph, << 139 G4AffineTransform thePhantomTransform( rotph, G4ThreeVector() );
131 // assumes the phantom mother is not transla << 140 // assumes the phantom mother is not translated !!!
132 << 141
133 G4AffineTransform theTransform = theVolumeTr << 142 G4AffineTransform theTransform = theVolumeTransform*thePhantomTransform;
134 << 143
135 G4ThreeVector axisX(1., 0., 0.); << 144 G4ThreeVector axisX( 1., 0., 0. );
136 G4ThreeVector axisY(0., 1., 0.); << 145 G4ThreeVector axisY( 0., 1., 0. );
137 G4ThreeVector axisZ(0., 0., 1.); << 146 G4ThreeVector axisZ( 0., 0., 1. );
138 theTransform.ApplyAxisTransform(axisX); 147 theTransform.ApplyAxisTransform(axisX);
139 theTransform.ApplyAxisTransform(axisY); 148 theTransform.ApplyAxisTransform(axisY);
140 theTransform.ApplyAxisTransform(axisZ); 149 theTransform.ApplyAxisTransform(axisZ);
141 << 150
142 //----- Write phantom header 151 //----- Write phantom header
143 G4String thePhantomFileName = "phantom.g4pdc 152 G4String thePhantomFileName = "phantom.g4pdcm";
144 fout.open(thePhantomFileName); 153 fout.open(thePhantomFileName);
145 std::vector<G4Material*> materials = thePhan 154 std::vector<G4Material*> materials = thePhantomParam->GetMaterials();
146 fout << materials.size() << G4endl; 155 fout << materials.size() << G4endl;
147 for (unsigned int ii = 0; ii < materials.siz << 156 for( unsigned int ii = 0; ii < materials.size(); ii++ ) {
148 fout << ii << " " << materials[ii]->GetNam 157 fout << ii << " " << materials[ii]->GetName() << G4endl;
149 } 158 }
150 159
151 //----- Loop to pantom voxels 160 //----- Loop to pantom voxels
152 G4int nx = G4int(thePhantomParam->GetNoVoxel << 161 G4int nx = thePhantomParam->GetNoVoxelX();
153 G4int ny = G4int(thePhantomParam->GetNoVoxel << 162 G4int ny = thePhantomParam->GetNoVoxelY();
154 G4int nz = G4int(thePhantomParam->GetNoVoxel << 163 G4int nz = thePhantomParam->GetNoVoxelZ();
155 G4int nxy = nx * ny; << 164 G4int nxy = nx*ny;
156 fVoxelIsInside = new G4bool[nx * ny * nz]; << 165 fVoxelIsInside = new G4bool[nx*ny*nz];
157 G4double voxelHalfWidthX = thePhantomParam-> 166 G4double voxelHalfWidthX = thePhantomParam->GetVoxelHalfX();
158 G4double voxelHalfWidthY = thePhantomParam-> 167 G4double voxelHalfWidthY = thePhantomParam->GetVoxelHalfY();
159 G4double voxelHalfWidthZ = thePhantomParam-> 168 G4double voxelHalfWidthZ = thePhantomParam->GetVoxelHalfZ();
160 169
161 //----- Write phantom dimensions and limits 170 //----- Write phantom dimensions and limits
162 fout << nx << " " << ny << " " << nz << G4en 171 fout << nx << " " << ny << " " << nz << G4endl;
163 fout << -voxelHalfWidthX * nx + thePhantomTr << 172 fout << -voxelHalfWidthX*nx+thePhantomTransform.NetTranslation().x() << " "
164 << voxelHalfWidthX * nx + thePhantomTra << 173 << voxelHalfWidthX*nx+thePhantomTransform.NetTranslation().x() << G4endl;
165 fout << -voxelHalfWidthY * ny + thePhantomTr << 174 fout << -voxelHalfWidthY*ny+thePhantomTransform.NetTranslation().y() << " "
166 << voxelHalfWidthY * ny + thePhantomTra << 175 << voxelHalfWidthY*ny+thePhantomTransform.NetTranslation().y() << G4endl;
167 fout << -voxelHalfWidthZ * nz + thePhantomTr << 176 fout << -voxelHalfWidthZ*nz+thePhantomTransform.NetTranslation().z() << " "
168 << voxelHalfWidthZ * nz + thePhantomTra << 177 << voxelHalfWidthZ*nz+thePhantomTransform.NetTranslation().z() << G4endl;
>> 178
>> 179 for( G4int iz = 0; iz < nz; iz++ ){
>> 180 for( G4int iy = 0; iy < ny; iy++) {
169 181
170 for (G4int iz = 0; iz < nz; ++iz) { <<
171 for (G4int iy = 0; iy < ny; ++iy) { <<
172 G4bool bPrevVoxelInside = true; 182 G4bool bPrevVoxelInside = true;
173 G4bool b1VoxelFoundInside = false; 183 G4bool b1VoxelFoundInside = false;
174 G4int firstVoxel = -1; 184 G4int firstVoxel = -1;
175 G4int lastVoxel = -1; 185 G4int lastVoxel = -1;
176 for (G4int ix = 0; ix < nx; ++ix) { << 186 for(G4int ix = 0; ix < nx; ix++ ){
177 G4ThreeVector voxelCentre((-nx + ix * << 187 G4ThreeVector voxelCentre( (-nx+ix*2+1)*voxelHalfWidthX,
178 (-ny + iy * << 188 (-ny+iy*2+1)*voxelHalfWidthY, (-nz+iz*2+1)*voxelHalfWidthZ);
179 (-nz + iz * <<
180 theTransform.ApplyPointTransform(voxel 189 theTransform.ApplyPointTransform(voxelCentre);
181 G4bool bVoxelIsInside = true; 190 G4bool bVoxelIsInside = true;
182 for (G4int ivx = -1; ivx <= 1; ivx += << 191 for( G4int ivx = -1; ivx <= 1; ivx+=2 ) {
183 for (G4int ivy = -1; ivy <= 1; ivy + << 192 for( G4int ivy = -1; ivy <= 1; ivy+=2 ){
184 for (G4int ivz = -1; ivz <= 1; ivz << 193 for( G4int ivz = -1; ivz <= 1; ivz+=2 ) {
185 G4ThreeVector voxelPoint = voxel << 194 G4ThreeVector voxelPoint = voxelCentre
186 + ivy << 195 + ivx*voxelHalfWidthX*axisX +
187 + ivz << 196 ivy*voxelHalfWidthY*axisY + ivz*voxelHalfWidthZ*axisZ;
188 if (fSolid->Inside(voxelPoint) = << 197 if( fSolid->Inside( voxelPoint ) == kOutside ) {
189 bVoxelIsInside = false; 198 bVoxelIsInside = false;
190 break; 199 break;
191 } << 200 } else {
192 else { <<
193 } 201 }
194 } 202 }
195 if (!bVoxelIsInside) break; << 203 if( !bVoxelIsInside ) break;
196 } 204 }
197 if (!bVoxelIsInside) break; << 205 if( !bVoxelIsInside ) break;
198 } 206 }
199 207
200 G4int copyNo = ix + nx * iy + nxy * iz << 208 G4int copyNo = ix + nx*iy + nxy*iz;
201 if (bVoxelIsInside) { << 209 if( bVoxelIsInside ) {
202 if (!bPrevVoxelInside) { << 210 if( !bPrevVoxelInside ) {
203 G4Exception("DicomIntersectVolume: << 211 G4Exception("DicomIntersectVolume::SetNewValue",
204 "Volume cannot interse << 212 "",
205 "please use other voxe << 213 FatalException,
>> 214 "Volume cannot intersect phantom in discontiguous voxels, "
>> 215 "please use other voxel");
206 } 216 }
207 if (!b1VoxelFoundInside) { << 217 if( !b1VoxelFoundInside ) {
208 firstVoxel = ix; 218 firstVoxel = ix;
209 b1VoxelFoundInside = true; 219 b1VoxelFoundInside = true;
210 } 220 }
211 lastVoxel = ix; 221 lastVoxel = ix;
212 fVoxelIsInside[copyNo] = true; 222 fVoxelIsInside[copyNo] = true;
213 } << 223 } else {
214 else { <<
215 fVoxelIsInside[copyNo] = false; 224 fVoxelIsInside[copyNo] = false;
216 } 225 }
>> 226
217 } 227 }
218 fout << firstVoxel << " " << lastVoxel < 228 fout << firstVoxel << " " << lastVoxel << G4endl;
219 } 229 }
220 } 230 }
221 231
222 //----- Now write the materials 232 //----- Now write the materials
223 for (G4int iz = 0; iz < nz; ++iz) { << 233 for( G4int iz = 0; iz < nz; iz++ ){
224 for (G4int iy = 0; iy < ny; ++iy) { << 234 for( G4int iy = 0; iy < ny; iy++) {
225 G4bool b1xFound = false; << 235 G4bool b1xFound = false;
226 for (G4int ix = 0; ix < nx; ++ix) { << 236 for(G4int ix = 0; ix < nx; ix++ ){
227 size_t copyNo = ix + ny * iy + nxy * i << 237 size_t copyNo = ix + ny*iy + nxy*iz;
228 if (fVoxelIsInside[copyNo]) { << 238 // fout << " iz " << iz << " i " << iy << " ix " << ix << G4endl;
229 fout << thePhantomParam->GetMaterial << 239 if( fVoxelIsInside[copyNo] ) {
>> 240 fout << thePhantomParam->GetMaterialIndex(copyNo)<< " ";
230 b1xFound = true; 241 b1xFound = true;
231 } 242 }
232 } 243 }
233 if (b1xFound) fout << G4endl; << 244 if(b1xFound ) fout << G4endl;
234 } 245 }
235 } 246 }
236 247
237 // Now write densities 248 // Now write densities
238 for (G4int iz = 0; iz < nz; ++iz) { << 249 for( G4int iz = 0; iz < nz; iz++ ){
239 for (G4int iy = 0; iy < ny; ++iy) { << 250 for( G4int iy = 0; iy < ny; iy++) {
240 G4bool b1xFound = false; << 251 G4bool b1xFound = false;
241 for (G4int ix = 0; ix < nx; ++ix) { << 252 for(G4int ix = 0; ix < nx; ix++ ){
242 size_t copyNo = ix + ny * iy + nxy * i << 253 size_t copyNo = ix + ny*iy + nxy*iz;
243 if (fVoxelIsInside[copyNo]) { << 254 if( fVoxelIsInside[copyNo] ) {
244 fout << thePhantomParam->GetMaterial << 255 fout <<thePhantomParam->GetMaterial(copyNo)->GetDensity()/g*cm3<< " ";
245 b1xFound = true; 256 b1xFound = true;
246 } 257 }
247 } 258 }
248 if (b1xFound) fout << G4endl; << 259 if(b1xFound ) fout << G4endl;
249 } 260 }
250 } 261 }
251 } << 262
>> 263 }
252 264
253 //....oooOO0OOooo........oooOO0OOooo........oo 265 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
254 void DicomIntersectVolume::BuildUserSolid(std: << 266 void DicomIntersectVolume::BuildUserSolid( std::vector<G4String> params )
255 { 267 {
256 for (G4int ii = 0; ii < 6; ++ii) << 268 for( G4int ii = 0; ii < 6; ii++ ) params.erase( params.begin() );
257 params.erase(params.begin()); <<
258 // take otu position and rotation angles 269 // take otu position and rotation angles
259 params.insert(params.begin(), ":SOLID"); << 270 params.insert( params.begin(), ":SOLID");
260 params.insert(params.begin(), params[1]); << 271 params.insert( params.begin(), params[1] );
261 G4tgrSolid* tgrSolid = new G4tgrSolid(params 272 G4tgrSolid* tgrSolid = new G4tgrSolid(params);
262 G4tgbVolume* tgbVolume = new G4tgbVolume(); << 273 G4tgbVolume* tgbVolume = new G4tgbVolume();
263 fSolid = tgbVolume->FindOrConstructG4Solid(t << 274 fSolid = tgbVolume->FindOrConstructG4Solid( tgrSolid );
>> 275
264 } 276 }
265 277
266 //....oooOO0OOooo........oooOO0OOooo........oo 278 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
267 void DicomIntersectVolume::BuildG4Solid(std::v << 279 void DicomIntersectVolume::BuildG4Solid( std::vector<G4String> params )
268 { 280 {
269 fSolid = GetLogicalVolumes(params[0], 1, 1)[ << 281 fSolid = GetLogicalVolumes( params[0], 1, 1)[0]->GetSolid();
>> 282
270 } 283 }
271 284
272 //....oooOO0OOooo........oooOO0OOooo........oo 285 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
273 G4PhantomParameterisation* DicomIntersectVolum 286 G4PhantomParameterisation* DicomIntersectVolume::GetPhantomParam(G4bool bMustExist)
274 { 287 {
275 G4PhantomParameterisation* paramreg = 0; 288 G4PhantomParameterisation* paramreg = 0;
276 289
277 G4PhysicalVolumeStore* pvs = G4PhysicalVolum 290 G4PhysicalVolumeStore* pvs = G4PhysicalVolumeStore::GetInstance();
278 for (auto cite = pvs->cbegin(); cite != pvs- << 291 std::vector<G4VPhysicalVolume*>::iterator cite;
279 if (IsPhantomVolume(*cite)) { << 292 for( cite = pvs->begin(); cite != pvs->end(); cite++ ) {
280 const G4PVParameterised* pvparam = stati << 293
>> 294 if( IsPhantomVolume( *cite ) ) {
>> 295 const G4PVParameterised* pvparam =
>> 296 static_cast<const G4PVParameterised*>(*cite);
281 G4VPVParameterisation* param = pvparam-> 297 G4VPVParameterisation* param = pvparam->GetParameterisation();
282 // if( static_cast<const G4PhantomPar 298 // if( static_cast<const G4PhantomParameterisation*>(param) ){
283 // if( static_cast<const G4PhantomPar 299 // if( static_cast<const G4PhantomParameterisation*>(param) ){
284 // G4cout << "G4PhantomParameterisa 300 // G4cout << "G4PhantomParameterisation volume found "
285 // << (*cite)->GetName() << G4endl; 301 // << (*cite)->GetName() << G4endl;
286 paramreg = static_cast<G4PhantomParamete 302 paramreg = static_cast<G4PhantomParameterisation*>(param);
287 } 303 }
288 } 304 }
289 << 305
290 if (!paramreg && bMustExist) << 306 if( !paramreg && bMustExist )
291 G4Exception("DicomIntersectVolume::GetPhan << 307 G4Exception("DicomIntersectVolume::GetPhantomParam",
>> 308 "",
>> 309 FatalErrorInArgument,
292 " No G4PhantomParameterisation 310 " No G4PhantomParameterisation found ");
293 << 311
294 return paramreg; 312 return paramreg;
>> 313
295 } 314 }
296 315
297 //....oooOO0OOooo........oooOO0OOooo........oo 316 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
298 std::vector<G4VPhysicalVolume*> DicomIntersect << 317 std::vector<G4VPhysicalVolume*> DicomIntersectVolume::GetPhysicalVolumes(
299 << 318 const G4String& name, bool exists, G4int nVols )
300 { 319 {
301 std::vector<G4VPhysicalVolume*> vvolu; 320 std::vector<G4VPhysicalVolume*> vvolu;
302 std::string::size_type ial = name.rfind(":") 321 std::string::size_type ial = name.rfind(":");
303 G4String volname = ""; 322 G4String volname = "";
304 G4int volcopy = 0; 323 G4int volcopy = 0;
305 if (ial != std::string::npos) { << 324 if( ial != std::string::npos ) {
306 std::string::size_type ial2 = name.rfind(" << 325 std::string::size_type ial2 = name.rfind(":",ial-1);
307 if (ial2 != std::string::npos) { << 326 if( ial2 != std::string::npos ) {
308 G4Exception("DicomIntersectVolume::GetPh << 327 G4Exception("DicomIntersectVolume::GetPhysicalVolumes",
>> 328 "",
>> 329 FatalErrorInArgument,
309 G4String("Name corresponds t 330 G4String("Name corresponds to a touchable " + name).c_str());
>> 331 }else {
>> 332 volname = name.substr( 0, ial );
>> 333 volcopy = G4UIcommand::ConvertToInt( name.substr( ial+1, name.length() ).c_str() );
310 } 334 }
311 else { << 335 } else {
312 volname = name.substr(0, ial); <<
313 volcopy = G4UIcommand::ConvertToInt(name <<
314 } <<
315 } <<
316 else { <<
317 volname = name; 336 volname = name;
318 volcopy = -1; 337 volcopy = -1;
319 } 338 }
320 339
321 G4PhysicalVolumeStore* pvs = G4PhysicalVolum 340 G4PhysicalVolumeStore* pvs = G4PhysicalVolumeStore::GetInstance();
322 for (auto citepv = pvs->cbegin(); citepv != << 341 std::vector<G4VPhysicalVolume*>::iterator citepv;
323 if (volname == (*citepv)->GetName() && ((* << 342 for( citepv = pvs->begin(); citepv != pvs->end(); citepv++ ) {
324 vvolu.push_back(*citepv); << 343 if( volname == (*citepv)->GetName()
>> 344 && ( (*citepv)->GetCopyNo() == volcopy || -1 == volcopy ) ){
>> 345 vvolu.push_back( *citepv );
325 } 346 }
326 } 347 }
327 << 348
328 //----- Check that at least one volume was f 349 //----- Check that at least one volume was found
329 if (vvolu.size() == 0) { << 350 if( vvolu.size() == 0 ) {
330 if (exists) { << 351 if(exists) {
331 G4Exception(" DicomIntersectVolume::GetP << 352 G4Exception(" DicomIntersectVolume::GetPhysicalVolumes",
332 G4String("No physical volume << 353 "",
333 } << 354 FatalErrorInArgument,
334 else { << 355 G4String("No physical volume found with name " + name).c_str());
335 G4cerr << "!!WARNING: DicomIntersectVolu << 356 } else {
336 << " no physical volume found wit << 357 G4cerr << "!!WARNING: DicomIntersectVolume::GetPhysicalVolumes: "<<
>> 358 " no physical volume found with name " << name << G4endl;
337 } 359 }
338 } 360 }
339 361
340 if (nVols != -1 && G4int(vvolu.size()) != nV << 362 if( nVols != -1 && G4int(vvolu.size()) != nVols ) {
341 G4Exception("DicomIntersectVolume::GetLogi 363 G4Exception("DicomIntersectVolume::GetLogicalVolumes:",
342 "Wrong number of physical volu << 364 "Wrong number of physical volumes found",
343 ("Number of physical volumes " << 365 FatalErrorInArgument,
344 + ", requesting " + G4UIcomma << 366 ("Number of physical volumes " +
345 .c_str()); << 367 G4UIcommand::ConvertToString(G4int(vvolu.size())) +
346 } << 368 ", requesting " + G4UIcommand::ConvertToString(nVols)).c_str());
>> 369 }
347 370
348 return vvolu; 371 return vvolu;
349 } 372 }
350 373
351 //....oooOO0OOooo........oooOO0OOooo........oo 374 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
352 G4bool DicomIntersectVolume::IsPhantomVolume(G << 375 G4bool DicomIntersectVolume::IsPhantomVolume( G4VPhysicalVolume* pv )
353 { 376 {
354 EAxis axis; 377 EAxis axis;
355 G4int nReplicas; 378 G4int nReplicas;
356 G4double width, offset; << 379 G4double width,offset;
357 G4bool consuming; 380 G4bool consuming;
358 pv->GetReplicationData(axis, nReplicas, widt << 381 pv->GetReplicationData(axis,nReplicas,width,offset,consuming);
359 EVolume type = (consuming) ? kReplica : kPar 382 EVolume type = (consuming) ? kReplica : kParameterised;
360 if (type == kParameterised && pv->GetRegular << 383 if( type == kParameterised && pv->GetRegularStructureId() == 1 ) {
361 return TRUE; 384 return TRUE;
362 } << 385 } else {
363 else { <<
364 return FALSE; 386 return FALSE;
365 } 387 }
366 } << 388
>> 389 }
367 390
368 //....oooOO0OOooo........oooOO0OOooo........oo 391 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
369 std::vector<G4LogicalVolume*> DicomIntersectVo << 392 std::vector<G4LogicalVolume*> DicomIntersectVolume::GetLogicalVolumes(
370 << 393 const G4String& name, bool exists, G4int nVols )
371 { 394 {
372 // G4cout << "GetLogicalVolumes " << name < 395 // G4cout << "GetLogicalVolumes " << name << " " << exists << G4endl;
373 std::vector<G4LogicalVolume*> vvolu; 396 std::vector<G4LogicalVolume*> vvolu;
374 G4int ial = G4int(name.rfind(":")); << 397 G4int ial = name.rfind(":");
375 if (ial != -1) { << 398 if( ial != -1 ) {
376 G4Exception("DicomIntersectVolume::GetLogi << 399 G4Exception("DicomIntersectVolume::GetLogicalVolumes",
377 G4String("Name corresponds to << 400 "",
>> 401 FatalErrorInArgument,
>> 402 G4String("Name corresponds to a touchable or physcal volume"
>> 403 + name).c_str());
378 } 404 }
379 405
380 G4LogicalVolumeStore* lvs = G4LogicalVolumeS 406 G4LogicalVolumeStore* lvs = G4LogicalVolumeStore::GetInstance();
381 for (auto citelv = lvs->cbegin(); citelv != << 407 std::vector<G4LogicalVolume*>::iterator citelv;
382 if (name == (*citelv)->GetName()) { << 408 for( citelv = lvs->begin(); citelv != lvs->end(); citelv++ ) {
383 vvolu.push_back(*citelv); << 409 if( name == (*citelv)->GetName() ) {
>> 410 vvolu.push_back( *citelv );
384 } 411 }
385 } 412 }
386 << 413
387 //----- Check that at least one volume was f 414 //----- Check that at least one volume was found
388 if (vvolu.size() == 0) { << 415 if( vvolu.size() == 0 ) {
389 if (exists) { << 416 if(exists) {
390 G4Exception("DicomIntersectVolume::GetLo << 417 G4Exception("DicomIntersectVolume::GetLogicalVolumes:","",
391 ("no logical volume found wi << 418 FatalErrorInArgument,("no logical volume found with name "
392 } << 419 + name).c_str());
393 else { << 420 } else {
394 G4Exception("DicomIntersectVolume::GetLo << 421 G4Exception("DicomIntersectVolume::GetLogicalVolumes:","",
395 ("no logical volume found w << 422 JustWarning,("no logical volume found with name " + name).c_str());
396 } 423 }
397 } 424 }
398 425
399 if (nVols != -1 && G4int(vvolu.size()) != nV << 426 if( nVols != -1 && G4int(vvolu.size()) != nVols ) {
400 G4Exception("DicomIntersectVolume::GetLogi << 427 G4Exception("DicomIntersectVolume::GetLogicalVolumes:",
>> 428 "Wrong number of logical volumes found",
401 FatalErrorInArgument, 429 FatalErrorInArgument,
402 ("Number of logical volumes " << 430 ("Number of logical volumes " +
403 + ", requesting " + G4UIcomma << 431 G4UIcommand::ConvertToString(G4int(vvolu.size())) +
404 .c_str()); << 432 ", requesting " + G4UIcommand::ConvertToString(nVols)).c_str());
405 } << 433 }
406 434
407 return vvolu; 435 return vvolu;
>> 436
408 } 437 }
409 438
410 //....oooOO0OOooo........oooOO0OOooo........oo 439 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
411 std::vector<G4String> DicomIntersectVolume::Ge << 440 std::vector<G4String> DicomIntersectVolume::GetWordsInString(
>> 441 const G4String& stemp)
412 { 442 {
413 std::vector<G4String> wordlist; 443 std::vector<G4String> wordlist;
414 444
415 //---------- Read a line of file: 445 //---------- Read a line of file:
416 //----- Clear wordlist 446 //----- Clear wordlist
417 G4int ii; 447 G4int ii;
418 const char* cstr = stemp.c_str(); 448 const char* cstr = stemp.c_str();
419 G4int siz = G4int(stemp.length()); << 449 int siz = stemp.length();
420 G4int istart = 0; << 450 int istart = 0;
421 G4int nQuotes = 0; << 451 int nQuotes = 0;
422 G4bool lastIsBlank = false; << 452 bool lastIsBlank = false;
423 G4bool lastIsQuote = false; << 453 bool lastIsQuote = false;
424 for (ii = 0; ii < siz; ++ii) { << 454 for( ii = 0; ii < siz; ii++ ){
425 if (cstr[ii] == '\"') { << 455 if(cstr[ii] == '\"' ){
426 if (lastIsQuote) { << 456 if( lastIsQuote ){
427 G4Exception("GmGenUtils:GetWordsFromSt << 457 G4Exception("GmGenUtils:GetWordsFromString","",FatalException,
428 ("There cannot be two quot << 458 ("There cannot be two quotes together " + stemp).c_str() );
429 } 459 }
430 if (nQuotes % 2 == 1) { << 460 if( nQuotes%2 == 1 ){
431 // close word << 461 //close word
432 wordlist.push_back(stemp.substr(istart << 462 wordlist.push_back( stemp.substr(istart,ii-istart) );
433 // G4cout << "GetWordsInString << 463 // G4cout << "GetWordsInString new word0 "
434 //<< wordlist[wordlist.size()-1] << " << 464 //<< wordlist[wordlist.size()-1] << " istart " << istart
435 //<< " ii " << ii << G4endl; 465 //<< " ii " << ii << G4endl;
>> 466 } else {
>> 467 istart = ii+1;
436 } 468 }
437 else { << 469 nQuotes++;
438 istart = ii + 1; <<
439 } <<
440 ++nQuotes; <<
441 lastIsQuote = true; 470 lastIsQuote = true;
442 lastIsBlank = false; 471 lastIsBlank = false;
443 } << 472 } else if(cstr[ii] == ' ' ){
444 else if (cstr[ii] == ' ') { << 473 // G4cout << "GetWordsInString blank nQuotes "
445 // G4cout << "GetWordsInStrin <<
446 //<< nQuotes << " lastIsBlank " << lastI 474 //<< nQuotes << " lastIsBlank " << lastIsBlank << G4endl;
447 if (nQuotes % 2 == 0) { << 475 if( nQuotes%2 == 0 ){
448 if (!lastIsBlank && !lastIsQuote) { << 476 if( !lastIsBlank && !lastIsQuote ) {
449 wordlist.push_back(stemp.substr(ista << 477 wordlist.push_back( stemp.substr(istart,ii-istart) );
450 // G4cout << "GetWordsInStr << 478 // G4cout << "GetWordsInString new word1 "
451 //<< wordlist[wordlist.size()-1] << << 479 //<< wordlist[wordlist.size()-1] << " lastIsBlank "
452 //<< lastIsBlank << G4endl; 480 //<< lastIsBlank << G4endl;
453 } 481 }
454 482
455 istart = ii + 1; << 483 istart = ii+1;
456 lastIsQuote = false; 484 lastIsQuote = false;
457 lastIsBlank = true; 485 lastIsBlank = true;
458 } 486 }
459 } << 487 } else {
460 else { << 488 if( ii == siz-1 ) {
461 if (ii == siz - 1) { << 489 wordlist.push_back( stemp.substr(istart,ii-istart+1) );
462 wordlist.push_back(stemp.substr(istart << 490 // G4cout << "GetWordsInString new word2 "
463 // G4cout << "GetWordsI << 491 //<< wordlist[wordlist.size()-1] << " istart " << istart << G4endl;
464 //<< wordlist[wordlist.size()-1] << " <<
465 } 492 }
466 lastIsQuote = false; 493 lastIsQuote = false;
467 lastIsBlank = false; 494 lastIsBlank = false;
468 } 495 }
469 } 496 }
470 if (nQuotes % 2 == 1) { << 497 if( nQuotes%2 == 1 ) {
471 G4Exception("GmGenUtils:GetWordsFromString << 498 G4Exception("GmGenUtils:GetWordsFromString","",FatalException,
472 ("unbalanced quotes in line " << 499 ("unbalanced quotes in line " + stemp).c_str() );
473 } 500 }
474 501
475 return wordlist; 502 return wordlist;
476 } 503 }
477 504