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Geant4/examples/extended/medical/DICOM/History

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Diff markup

Differences between /examples/extended/medical/DICOM/History (Version 11.3.0) and /examples/extended/medical/DICOM/History (Version 9.1.p2)


  1 # Example DICOM History                        <<   1 $Id: History,v 1.13 2008/01/22 15:09:53 gcosmo Exp $
                                                   >>   2 -------------------------------------------------------------------
  2                                                     3 
  3 See `CONTRIBUTING.rst` for details of **requir <<   4      =========================================================
  4 which **must** added in reverse chronological  <<   5           Geant4 - DICOM example
  5 It must **not** be used as a substitute for wr <<   6      =========================================================
  6                                                     7 
  7 ---------------------------------------------- <<   8                       Category History file
  8                                                <<   9                       ---------------------
  9 ## 2024-06-05 L. T. Anh (DICOM-V11-02-00)      << 
 10 - Correct symbols for Chlorine and Potassium e << 
 11   InitialisationOfMaterials().                 << 
 12                                                << 
 13 ## 2023-12-03 A. Howard (DICOM-V11-01-02)      << 
 14 - Modified DicomDetectorConstruction: added co << 
 15   of G4PSDoseDeposit3D for nested parameterisa << 
 16   according to the fixed formula within G4PSDo << 
 17   variable to switch to standard G4PSDoseDepos << 
 18   navigation (default).                        << 
 19 - Updated README and .README to be more correc << 
 20   G4PSDoseDeposit3D and its usage for nested p << 
 21                                                << 
 22 ## 2023-11-25 C. Mancini (DICOM-V11-01-01)     << 
 23 - Modified DicomNestedPhantomParameterisation: << 
 24   from the  "G4Material* mate" instantiation.  << 
 25                                                << 
 26 ## 2023-09-02 Gabriele Cosmo (DICOM-V11-01-00) << 
 27 - Removed forward declaration for G4VTouchable << 
 28                                                << 
 29 ## 2022-10-04 John Allison (DICOM-V11-00-04)   << 
 30 - Introduce special mesh rendering of DICOM im << 
 31                                                << 
 32 ## 2022-10-24 I. Hrivnacova  (DICOM-V11-00-03) << 
 33 - Coding guidelines: start data member with 'f << 
 34   (skipped dicomReader classes).               << 
 35                                                << 
 36 ## 2022-10-04 Ben Morgan (DICOM-V11-00-02)     << 
 37 - Replace sprintf with direct G4String use to  << 
 38   macOS-13.                                    << 
 39                                                << 
 40 ## 2022-10-04 Gabriele Cosmo (DICOM-V11-00-01) << 
 41 - Fixed compilation warning on Intel-icx compi << 
 42   in DicomHandler::ReadData().                 << 
 43                                                << 
 44 ## 2021-12-10 Ben Morgan (DICOM-V11-00-00)     << 
 45 - Change to new Markdown History format.       << 
 46                                                << 
 47 ---                                            << 
 48                                                << 
 49 # History entries prior to 11.0                << 
 50                                                << 
 51 27.09.2021  Pedro Arce (DICOM-V10-07-01)       << 
 52 - Use updated interface from geomnav to use G4 << 
 53                                                << 
 54 31.12.2020 - John Allison (DICOM-V10-07-00)    << 
 55              vis.mac: "Change /vis/ogl/set/eve << 
 56              "/vis/ogl/flushAt NthPrimitive".  << 
 57                                                << 
 58 10.11.2020 - Ben Morgan (DICOM-V10-06-01)      << 
 59              Migration to G4RunManagerFactory. << 
 60                                                << 
 61 21.10.2020 - Ben Morgan (DICOM-V10-06-00)      << 
 62              Distinguish output names of archi << 
 63              fix Windows LNK1149 errors for st << 
 64              Modernize cmake version detection << 
 65              Geant4 usage.                     << 
 66                                                << 
 67 19.11.2019 - Gabriele Cosmo (DICOM-V10-05-03)  << 
 68              Fixed more cases of implicit type << 
 69              Some minor code cleanup.          << 
 70                                                << 
 71 15.11.2019 - Gabriele Cosmo (DICOM-V10-05-02)  << 
 72              Fixed cases of implicit type conv << 
 73                                                << 
 74 12.11.2019 - Gunter Folger (DICOM-V10-05-01)   << 
 75              Correct DicomHandler singleton fo << 
 76        DICOM2 was crashing                     << 
 77                                                << 
 78 08.06.2019 - Gabriele Cosmo (DICOM-V10-05-00)  << 
 79              Defaulted copy-ctr in DicomPhanto << 
 80              compilation warnings on gcc-9.1.  << 
 81                                                << 
 82 13.11.2018 - Jonathan Madsen (DICOM-V10-04-11) << 
 83              Bugfix (2102) to DicomHandler rea << 
 84                                                << 
 85 13.11.2018 - Jonathan Madsen (DICOM-V10-04-10) << 
 86              Bugfix (2101) to DicomHandler ski << 
 87                                                << 
 88 12.11.2018 - Jonathan Madsen (DICOM-V10-04-09) << 
 89              Updated DICOMUtilities.cmake to h << 
 90              Using modern CMake DICOM::target  << 
 91                                                << 
 92 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-08)  << 
 93              DicomDetectorConstruction: remove << 
 94              method.                           << 
 95                                                << 
 96 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-07)  << 
 97              DicomPartialDetectorConstruction: << 
 98              data for 'fMateIDs'. Fixed type c << 
 99                                                << 
100 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-06)  << 
101              DicomNestedPhantomParameterisatio << 
102              causing compilation error on Linu << 
103                                                << 
104 10.11.2018 - Jonathan Madsen (DICOM-V10-04-05) << 
105              DICOMConfig.cmake.in handles DICO << 
106              DownloadDICOMData.cmake does inst << 
107              CMakeLists.txt creates build-tree << 
108              DicomDetectorConstruction is glob << 
109              DicomHandler implements GetDicomD << 
110                which provides a fallback path  << 
111                directory for DICOM2 and handle << 
112              Phantom parameterization classes  << 
113                specifying color file           << 
114              fDcmrun is protected instead of p << 
115              DicomEventAction doesn't print ev << 
116              Removed DicomRun::RecordEvent inc << 
117                (done by G4Run::RecordEvent)    << 
118              Cleaned up output (when provided  << 
119                it was too excessive) now just  << 
120                and per-voxel is output to file << 
121              Moved Data.dat to Data.dat.old an << 
122                Data.dat.{old,new} to Data.dat  << 
123                on DICOM_USE_DCMTK setting      << 
124              Updated README                    << 
125                                                << 
126 09.11.2018 - Gabriele Cosmo (DICOM-V10-04-04)  << 
127              Use canonical definition for DICO << 
128              singleton specification (in any c << 
129                                                << 
130 22.06.2018 - Jonathan Madsen (DICOM-V10-04-03) << 
131              Added dicomReader/cmake/DICOMUtil << 
132              a DICOM_BUILD_LIBRARY macro which << 
133              DICOM-library (and dicomReader li << 
134              based on the Geant4 installation  << 
135              both) + updates to DICOMConfig.cm << 
136              dicomReaderConfig.cmake.in to han << 
137              use link to                       << 
138                                                << 
139 20.05.2018 - John Allison (DICOM-V10-04-02)    << 
140              Remove G4UI_USE and G4VIS_USE.    << 
141              Move instantiation of G4UIExecuti << 
142                                                << 
143 09.05.2018 - Ben Morgan (DICOM-V10-04-01)      << 
144              Include G4Types before use of G4M << 
145              compatibility with move to #defin << 
146              symbols.                          << 
147                                                << 
148 20.03.2018 - Jonathan Madsen (DICOM-V10-04-00) << 
149              Enabled CMake package configurati << 
150              Added DICOM_USE_DCMTK and DICOM_U << 
151               options back-compat with environ << 
152              Updated README and .README.txt    << 
153                                                << 
154 11.11.2017 - Marc Verderi (DICOM-V10-03-12)    << 
155              Retag as DICOM-V10-03-11 too quic << 
156                                                << 
157 09.11.2017 - Ivana Hrivnacova (DICOM-V10-03-11 << 
158              Updated DICOM data version to 1.1 << 
159                                                << 
160 09.11.2017 - S. Guatelli (DICOM-V10-03-10)     << 
161              Updated README and .README.txt    << 
162                                                << 
163 09.11.2017 - S. Guatelli (DICOM-V10-03-09)     << 
164              .g4dmc created in the user direct << 
165              together with the .g4dcmb files.  << 
166                                                << 
167 09.11.2017 - S. Guatelli (DICOM-V10-03-08)     << 
168              DICOM_PATH changed                << 
169              no writing .g4dcmb in the library << 
170                                                << 
171 08.11.2017 - Ivana Hrivnacova (DICOM-V10-03-07 << 
172              Added downloading DICOM data in C << 
173              (used only with DICOM_USE_HEAD op << 
174                                                << 
175 07.11.2017 - S. Guatelli (DICOM-V10-03-06).    << 
176              Warning deleted, updated README a << 
177                                                << 
178 01.11.2017 - S. Guatelli (DICOM-V10-03-05).    << 
179              DICOM_HEAD library can be used as << 
180              DICOM_v1 does not need to be copi << 
181                                                << 
182 01.11.2017 - S. Guatelli (DICOM-V10-03-04). DI << 
183                                                << 
184 28.09.2017 - S. Guatelli (DICOM-V10-03-03). DI << 
185                                                << 
186 16.09.2017 - S. Guatelli (DICOM-V10-03-02)     << 
187            - New DICOM Digital Head included b << 
188            - Updated README, .README.txt       << 
189                                                << 
190 19.11.2016 - Andrea Dotti     (DICOM-V10-02-04 << 
191            - explicit set of SD to manager     << 
192                                                << 
193 11.11.2016 - Ivana Hrivnacova (DICOM-V10-02-03 << 
194            - Removed extra compiler flags in G << 
195              (not needed)                      << 
196            - Renamed G4_USE_DCMTK in DICOM_USE << 
197            - Updated README, .README.txt       << 
198                                                << 
199 11.11.2016 - Pedro Arce (DICOM-V10-02-02)      << 
200            - Complying with Geant4 guidelines  << 
201                                                << 
202 04.11.2016 - Pedro Arce (DICOM-V10-02-01)      << 
203            - New DICOM reader based on DCMTK   << 
204                                                << 
205 20.07.2016 - Ivana Hrivnacova (DICOM-V10-02-00 << 
206            - Fixed coding guidelines           << 
207              (redundant empty lines, class dat << 
208                                                << 
209 17.09.2015 - Pedro Arce (DICOM-V10-01-01)      << 
210            - Fixed coding guidelines (long lin << 
211                                                << 
212 21.10.2014 - Pedro Arce (DICOM-V10-00-04)      << 
213            - Fixed coding guidelines (long lin << 
214                                                << 
215 16.10.2014 - Ivana Hrivnacova (DICOM-V10-00-03 << 
216            - Fixed coding guidelines (long lin << 
217              DicomPartialDetectorConstruction. << 
218                                                << 
219 29.07.2014 - Pedro Arce (DICOM-V10-00-02)      << 
220            - Remove DicomPhysicsList           << 
221                                                << 
222 25.07.2014 - Pedro Arce (DICOM-V10-00-01)      << 
223            - Using G4GenericPhysicsList        << 
224          - no std::cout                        << 
225      - no exit()                               << 
226                                                << 
227 03.12.2013 - Gabriele Cosmo (DICOM-V10-00-00)  << 
228            - Attempt to fix Valgrind run-time  << 
229              DicomHandler::CheckFileFormat().  << 
230                                                << 
231 03.12.2013 - Ivana Hrivnacova (DICOM-V09-06-09 << 
232            - Updated README and .README to mat << 
233                                                << 
234 18.11.2014 - Ivana Hrivnacova (DICOM-V09-06-08 << 
235            - Fixed DicomPhantomZSliceMerged.hh << 
236              (for Doxygen)                     << 
237                                                << 
238 13.11.2014 - Jonathan Mdsen (DICOM-V09-06-07)  << 
239            - Updated README and .README        << 
240            - Fixed some comments               << 
241                                                << 
242 04.11.2013 - Dennis Wright  (DICOM-V09-06-06)  << 
243            - replaced LEP model for alphas by  << 
244              zero energy                       << 
245            - updated sample output files to re << 
246                                                << 
247 23.10.2013 - Gabriele Cosmo (DICOM-V09-06-05)  << 
248      - Fixed compilation warnings.             << 
249                                                << 
250 15.10.2013 - Jonathan Madsen (DICOM-V09-06-04) << 
251      - Modified DICOM to enable multithreading << 
252        - Adapted scorers                       << 
253        - Added ActionInitialization class      << 
254        - Modified RunAction to handle master a << 
255                                                << 
256 09.10.2013 - Ivana Hrivnacova (DICOM-V09-06-03 << 
257            Fixed file description (DicomPhanto << 
258                                                << 
259 28.08.2013 - Gabriele Cosmo (DICOM-V09-06-02)  << 
260            Added G4Ellipsoid to solids enabled << 
261            DicomNestedPhantomParameterisation. << 
262                                                << 
263 29.07.2013 - Peter Gumplinger (DICOM-V09-06-01 << 
264            Fixed MAC/clang32 compilation warni << 
265            DiconIntersectVolume classes        << 
266                                                << 
267 18.07.2013 - Jonathan Madsen                   << 
268            Missing documentation update from 1 << 
269              Improvements and bug-fixes ->     << 
270              DicomHandler had some bugs when u << 
271                other than examples provided    << 
272              Added DicomPhantomZSliceMerged cl << 
273                inconsistencies in DCM file met << 
274              DicomPhantomZSliceHeader class is << 
275                and material ID data and the pr << 
276                to files instead of DicomHandle << 
277            Removed additions on 16.07.2013 pen << 
278            Reverted DICOM example to 18.12.201 << 
279              minor tweaks                      << 
280            Kept share folder with additional a << 
281              and additional data files (SixSli << 
282              these files with Data.dat to use  << 
283            Kept CMakeLists.txt to copy over ex << 
284              DCM files                         << 
285                                                << 
286 16.07.2013 - Jonathan Madsen                   << 
287            Many modifications to the DICOM exa << 
288            Added more anonymous DICOM files.   << 
289            Added more script configurations.   << 
290            Added DicomCommandLineOptions, Dico << 
291              DicomOption as part of a command  << 
292            Modified CMakeLists.txt to configur << 
293            Added capability to use different d << 
294              CT2Density file, ColourMap file.  << 
295            Added Statistical Analysis and Stat << 
296            Miscellaneous improvements.         << 
297            DICOM.cc now has a large list of ru << 
298              via command line.                 << 
299            Options set at command line are set << 
300              variables.                        << 
301                                                << 
302 15.02.2013 - Ivana Hrivnacova (DICOM-V09-06-00 << 
303            Applied coding guidelines (virtual  << 
304            names and initialization)           << 
305                                                << 
306 07.11.2012 - Gabriele Cosmo (DICOM-V09-05-10)  << 
307            Fixed compilation warnings for shad << 
308            return flag from system calls.      << 
309                                                << 
310 18.10.2012 - Ivana Hrivnacova (DICOM-V09-05-09 << 
311      Updated CMakeLists.txt: added copying dat << 
312            area as they are needed to run the  << 
313                                                << 
314 13.10.2012 - Andrea Dotti (DICOM-V09-05-08)    << 
315      Removing previous tag modification (not n << 
316                                                << 
317 13.10.2012 - Andrea Dotti (DICOM-V09-05-07)    << 
318        Adding explicit use of system of units  << 
319                                                << 
320 05.09.2012 - Ivana Hrivnacova (DICOM-V09-05-06 << 
321              Fixed compiler warning            << 
322                                                << 
323 04.09.2012 - Pedro Arce    (DICOM-V09-05-05)   << 
324              Remove old renamed files          << 
325              Updated CMakeLists.txt (By I.Hriv << 
326              Adding visualization, copying mac << 
327              comment lines                     << 
328                                                << 
329 17.07.2012 - Ivana Hrivnacova (DICOM-V09-05-04 << 
330              Improved README files             << 
331                                                << 
332 06.07.2012 - Pedro Arce    (DICOM-V09-05-03)   << 
333              Reviewed examples according to co << 
334                                                << 
335 13.06.2012 - Gabriele Cosmo   (DICOM-V09-05-02 << 
336              Assign return value for fread() a << 
337              DicomHandler. Fixes compilation w << 
338                                                << 
339 28.03.2012 - Pedro Arce   (DICOM-V09-05-01)    << 
340              Corrections in materials Z/A. Add << 
341                                                << 
342 13.11.2011 - Pedro Arce   (DICOM-V09-04-03)    << 
343              Migration to new G4Exception sche << 
344                                                << 
345 03.10.2011 - G.Folger   (DICOM-V09-04-02)      << 
346              Fix gcc46 compilation warning in  << 
347              and DicomPhantomParameterisationC << 
348                                                << 
349 05.06.2011 - Pedro Arce (DICOM-V09-04-01)      << 
350              Corrected name for sensitive dete << 
351              named as "phantomSD" in DicomRunA << 
352              report #1210.                     << 
353              Corrected axis slicing hint in ne << 
354                                                << 
355 23.12.2010 - Stephane Chauvie                  << 
356              Corrected 2 bugs in DicomHandler  << 
357                                                << 
358 30.11.2010 - John Allison                      << 
359              dicom.cc: Removed redundant heade << 
360              "G4UIterminal.hh" and "G4UItcsh.h << 
361                                                << 
362 30.11.2010 - Ivana Hrivnacova (DICOM-V09-03-09 << 
363              Moved inclusion of vis headers as << 
364                                                << 
365 26.11.2010 - Pedro Arce (DICOM-V09-03-08)      << 
366        Correction of warnings                  << 
367                                                << 
368 24.11.2010 - Pedro Arce (DICOM-V09-03-07)      << 
369        Introduced partial phantom example      << 
370        Delete G4PSDoseDeposit_RegNav and use G << 
371                                                << 
372 11.11.2010 - Gabriele Cosmo (DICOM-V09-03-06)  << 
373              Corrected vis.mac macro and set O << 
374              Corrected some printouts in code. << 
375                                                << 
376 09.11.2010 - Gabriele Cosmo (DICOM-V09-03-05)  << 
377              Fixed compilation warning on virt << 
378              Fixed compilation warnings in Dic << 
379              and DicomHandler.                 << 
380                                                << 
381 02.11.2010 - John Allison (DICOM-V09-03-04)    << 
382              Introduced G4UIExecutive.         << 
383                                                << 
384 06.06.2010 - Joseph Perl (DICOM-V09-03-03)     << 
385        Remove unused variable in EventAction   << 
386                                                << 
387 03.06.2010 - Joseph Perl (DICOM-V09-03-02)     << 
388        Updated vis usage                       << 
389                                                << 
390 19.11.2009 - StÈphane Chauvie (DICOM-V09-03-0 << 
391 01.06.2010 - Stephane Chauvie - Andrea Armando << 
392        Added function to read nested items (de << 
393        Removed dependencies on CONQUEST        << 
394        DICOM handler could now read whichever  << 
395              (PT,CT,DR,CR,US,MR... )           << 
396                                                << 
397 19.11.2009 - Stephanee Chauvie (DICOM-V09-02-0 << 
398        Changed DICOM Handler to read CT files  << 
399              DICOM server                      << 
400                                                << 
401 05.02.2009 - Pedro Arce (DICOM-V09-02-01)      << 
402              Added report on dose per voxel.   << 
403              Added warning for erroneous inclu << 
404              release 9.2 (to be removed when f << 
405                                                << 
406 27.01.2009 - Gabriele Cosmo (DICOM-V09-02-00)  << 
407              Use new class G4RegularNavigation << 
408              lengths in voxels of the regular  << 
409                                                << 
410 27.11.2008 - Pedro Arce (DICOM-V09-01-02)      << 
411              Included G4PSDoseDeposit_RegNav t << 
412        including msc and energy loss correctio << 
413        skipping voxel with equal materials whe << 
414        navigation                              << 
415                                                << 
416 21.07.2008 - Pedro Arce (DICOM-V09-01-01)      << 
417              Bug fix in DicomNestedPhantomPara << 
418              'copyNo', so that material assign << 
419              Set default cut to 1 mm (with pre << 
420              spent on physics and no improveme << 
421              navigation options).              << 
422              Corrected direction and position  << 
423              they traverse the DICOM voxels.   << 
424                                                    10 
425 22.01.2008 - Pedro Arce (DICOM-V09-01-00)          11 22.01.2008 - Pedro Arce (DICOM-V09-01-00)
426              Do not use 'rindex' in DicomHandl     12              Do not use 'rindex' in DicomHandler class to avoid problems
427              on Windows.                           13              on Windows.
428                                                    14 
429 06.12.2007 - Pedro Arce                            15 06.12.2007 - Pedro Arce
430              Added voxel colouring by material     16              Added voxel colouring by material. Added possibility to use nested parameterisation
431                                                    17 
432 05.12.2007 - Pedro Arce                            18 05.12.2007 - Pedro Arce
433              Deep review on the input files an     19              Deep review on the input files and the way how the geometry is built.
434              Use of G4PhantomParameterisation      20              Use of G4PhantomParameterisation and G4RegularNavigation.
435                                                    21 
436 06.12.2005 - Gabriele Cosmo                        22 06.12.2005 - Gabriele Cosmo
437              Trivial changes for support of CL     23              Trivial changes for support of CLHEP-2.0.X series.
438                                                    24 
439 29.11.2005 - Susanna Guatelli (DICOM-V07-01-00     25 29.11.2005 - Susanna Guatelli (DICOM-V07-01-00)
440              Documentation update                  26              Documentation update
441                                                    27 
442 12.06.2005 - Stephane Chauvie (DICOM-V07-00-01     28 12.06.2005 - Stephane Chauvie (DICOM-V07-00-01)
443              Added improvement by Akinori Kimu     29              Added improvement by Akinori Kimura.
444                                                    30 
445 03.05.2005 - John Allison                          31 03.05.2005 - John Allison
446              Replaced vis manager with G4VisEx     32              Replaced vis manager with G4VisExecutive.
447                                                    33 
448 10.12.2004 - Maria Grazia Pia (DICOM-V06-02-02     34 10.12.2004 - Maria Grazia Pia (DICOM-V06-02-02)
449              Update README to announce further     35              Update README to announce further improvements and fixes
450              by Akinori Kimura.                    36              by Akinori Kimura.
451                                                    37 
452 3.12.2004 - Gabriele Cosmo (DICOM-V06-02-01)       38 3.12.2004 - Gabriele Cosmo (DICOM-V06-02-01)
453             Implemented migration to <cmath>.      39             Implemented migration to <cmath>.
454                                                    40 
455 13.5.2004 - Susanna Guatelli                       41 13.5.2004 - Susanna Guatelli
456             updated compiler: gcc3.2.3             42             updated compiler: gcc3.2.3
457                                                    43 
458 11.3.2003 - Susanna Guatelli                       44 11.3.2003 - Susanna Guatelli
459             README changed                         45             README changed
460                                                    46 
461 6.2003 - Susanna Guatelli                          47 6.2003 - Susanna Guatelli
462          First public release of the example       48          First public release of the example