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Geant4/examples/extended/medical/DICOM/History

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Diff markup

Differences between /examples/extended/medical/DICOM/History (Version 11.3.0) and /examples/extended/medical/DICOM/History (Version 11.2.1)


  1 # Example DICOM History                             1 # Example DICOM History
  2                                                     2 
  3 See `CONTRIBUTING.rst` for details of **requir      3 See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
  4 which **must** added in reverse chronological       4 which **must** added in reverse chronological order (newest at the top).
  5 It must **not** be used as a substitute for wr      5 It must **not** be used as a substitute for writing good git commit messages!
  6                                                     6 
  7 ----------------------------------------------      7 -------------------------------------------------------------------------------
  8                                                     8 
  9 ## 2024-06-05 L. T. Anh (DICOM-V11-02-00)      << 
 10 - Correct symbols for Chlorine and Potassium e << 
 11   InitialisationOfMaterials().                 << 
 12                                                << 
 13 ## 2023-12-03 A. Howard (DICOM-V11-01-02)           9 ## 2023-12-03 A. Howard (DICOM-V11-01-02)
 14 - Modified DicomDetectorConstruction: added co     10 - Modified DicomDetectorConstruction: added correct replica depths for x,y,z
 15   of G4PSDoseDeposit3D for nested parameterisa     11   of G4PSDoseDeposit3D for nested parameterisation and corrected voxel ordering
 16   according to the fixed formula within G4PSDo     12   according to the fixed formula within G4PSDoseDeposit3D; added environment
 17   variable to switch to standard G4PSDoseDepos     13   variable to switch to standard G4PSDoseDeposit in the case of regular
 18   navigation (default).                            14   navigation (default).
 19 - Updated README and .README to be more correc     15 - Updated README and .README to be more correct and include description of
 20   G4PSDoseDeposit3D and its usage for nested p     16   G4PSDoseDeposit3D and its usage for nested parameterisation.
 21                                                    17   
 22 ## 2023-11-25 C. Mancini (DICOM-V11-01-01)         18 ## 2023-11-25 C. Mancini (DICOM-V11-01-01)
 23 - Modified DicomNestedPhantomParameterisation:     19 - Modified DicomNestedPhantomParameterisation: removed the "static" descriptor
 24   from the  "G4Material* mate" instantiation.      20   from the  "G4Material* mate" instantiation.
 25                                                    21   
 26 ## 2023-09-02 Gabriele Cosmo (DICOM-V11-01-00)     22 ## 2023-09-02 Gabriele Cosmo (DICOM-V11-01-00)
 27 - Removed forward declaration for G4VTouchable     23 - Removed forward declaration for G4VTouchable.
 28                                                    24 
 29 ## 2022-10-04 John Allison (DICOM-V11-00-04)       25 ## 2022-10-04 John Allison (DICOM-V11-00-04)
 30 - Introduce special mesh rendering of DICOM im     26 - Introduce special mesh rendering of DICOM image.
 31                                                    27 
 32 ## 2022-10-24 I. Hrivnacova  (DICOM-V11-00-03)     28 ## 2022-10-24 I. Hrivnacova  (DICOM-V11-00-03)
 33 - Coding guidelines: start data member with 'f     29 - Coding guidelines: start data member with 'f'; use G4int, G4double
 34   (skipped dicomReader classes).                   30   (skipped dicomReader classes).
 35                                                    31 
 36 ## 2022-10-04 Ben Morgan (DICOM-V11-00-02)         32 ## 2022-10-04 Ben Morgan (DICOM-V11-00-02)
 37 - Replace sprintf with direct G4String use to      33 - Replace sprintf with direct G4String use to remove deprecation warnings on
 38   macOS-13.                                        34   macOS-13.
 39                                                    35 
 40 ## 2022-10-04 Gabriele Cosmo (DICOM-V11-00-01)     36 ## 2022-10-04 Gabriele Cosmo (DICOM-V11-00-01)
 41 - Fixed compilation warning on Intel-icx compi     37 - Fixed compilation warning on Intel-icx compiler for set but unused variable
 42   in DicomHandler::ReadData().                     38   in DicomHandler::ReadData().
 43                                                    39 
 44 ## 2021-12-10 Ben Morgan (DICOM-V11-00-00)         40 ## 2021-12-10 Ben Morgan (DICOM-V11-00-00)
 45 - Change to new Markdown History format.           41 - Change to new Markdown History format.
 46                                                    42 
 47 ---                                                43 ---
 48                                                    44 
 49 # History entries prior to 11.0                    45 # History entries prior to 11.0
 50                                                    46 
 51 27.09.2021  Pedro Arce (DICOM-V10-07-01)           47 27.09.2021  Pedro Arce (DICOM-V10-07-01)
 52 - Use updated interface from geomnav to use G4     48 - Use updated interface from geomnav to use G4PhantomParameterisation::GetNoVoxels instead of GetNoVoxel
 53                                                    49 
 54 31.12.2020 - John Allison (DICOM-V10-07-00)        50 31.12.2020 - John Allison (DICOM-V10-07-00)
 55              vis.mac: "Change /vis/ogl/set/eve     51              vis.mac: "Change /vis/ogl/set/eventsDrawInterval" to
 56              "/vis/ogl/flushAt NthPrimitive".      52              "/vis/ogl/flushAt NthPrimitive".
 57                                                    53 
 58 10.11.2020 - Ben Morgan (DICOM-V10-06-01)          54 10.11.2020 - Ben Morgan (DICOM-V10-06-01)
 59              Migration to G4RunManagerFactory.     55              Migration to G4RunManagerFactory.
 60                                                    56 
 61 21.10.2020 - Ben Morgan (DICOM-V10-06-00)          57 21.10.2020 - Ben Morgan (DICOM-V10-06-00)
 62              Distinguish output names of archi     58              Distinguish output names of archive lib from DLL and application to
 63              fix Windows LNK1149 errors for st     59              fix Windows LNK1149 errors for static libs.
 64              Modernize cmake version detection     60              Modernize cmake version detection and policy setting to follow main
 65              Geant4 usage.                         61              Geant4 usage.
 66                                                    62 
 67 19.11.2019 - Gabriele Cosmo (DICOM-V10-05-03)      63 19.11.2019 - Gabriele Cosmo (DICOM-V10-05-03)
 68              Fixed more cases of implicit type     64              Fixed more cases of implicit type conversions.
 69              Some minor code cleanup.              65              Some minor code cleanup.
 70                                                    66 
 71 15.11.2019 - Gabriele Cosmo (DICOM-V10-05-02)      67 15.11.2019 - Gabriele Cosmo (DICOM-V10-05-02)
 72              Fixed cases of implicit type conv     68              Fixed cases of implicit type conversions from size_t to G4int.
 73                                                    69 
 74 12.11.2019 - Gunter Folger (DICOM-V10-05-01)       70 12.11.2019 - Gunter Folger (DICOM-V10-05-01)
 75              Correct DicomHandler singleton fo     71              Correct DicomHandler singleton for use on Windows.
 76        DICOM2 was crashing                         72        DICOM2 was crashing
 77                                                    73 
 78 08.06.2019 - Gabriele Cosmo (DICOM-V10-05-00)      74 08.06.2019 - Gabriele Cosmo (DICOM-V10-05-00)
 79              Defaulted copy-ctr in DicomPhanto     75              Defaulted copy-ctr in DicomPhantomZSliceHeader, to fix deprecation
 80              compilation warnings on gcc-9.1.      76              compilation warnings on gcc-9.1.
 81                                                    77 
 82 13.11.2018 - Jonathan Madsen (DICOM-V10-04-11)     78 13.11.2018 - Jonathan Madsen (DICOM-V10-04-11)
 83              Bugfix (2102) to DicomHandler rea     79              Bugfix (2102) to DicomHandler reading fPixelSpacingY
 84                                                    80 
 85 13.11.2018 - Jonathan Madsen (DICOM-V10-04-10)     81 13.11.2018 - Jonathan Madsen (DICOM-V10-04-10)
 86              Bugfix (2101) to DicomHandler ski     82              Bugfix (2101) to DicomHandler skipping 2 bytes in implicit VR
 87                                                    83 
 88 12.11.2018 - Jonathan Madsen (DICOM-V10-04-09)     84 12.11.2018 - Jonathan Madsen (DICOM-V10-04-09)
 89              Updated DICOMUtilities.cmake to h     85              Updated DICOMUtilities.cmake to handle Windows builds
 90              Using modern CMake DICOM::target      86              Using modern CMake DICOM::target library alias
 91                                                    87 
 92 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-08)      88 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-08)
 93              DicomDetectorConstruction: remove     89              DicomDetectorConstruction: removed useless static Instance()
 94              method.                               90              method.
 95                                                    91 
 96 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-07)      92 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-07)
 97              DicomPartialDetectorConstruction:     93              DicomPartialDetectorConstruction: fixed shadowing of base class
 98              data for 'fMateIDs'. Fixed type c     94              data for 'fMateIDs'. Fixed type conversion unsigned_int -> int.
 99                                                    95 
100 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-06)      96 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-06)
101              DicomNestedPhantomParameterisatio     97              DicomNestedPhantomParameterisation: removed useless statement
102              causing compilation error on Linu     98              causing compilation error on Linux.
103                                                    99 
104 10.11.2018 - Jonathan Madsen (DICOM-V10-04-05)    100 10.11.2018 - Jonathan Madsen (DICOM-V10-04-05)
105              DICOMConfig.cmake.in handles DICO    101              DICOMConfig.cmake.in handles DICOM_USE_HEAD being set
106              DownloadDICOMData.cmake does inst    102              DownloadDICOMData.cmake does installation
107              CMakeLists.txt creates build-tree    103              CMakeLists.txt creates build-tree export
108              DicomDetectorConstruction is glob    104              DicomDetectorConstruction is globally accessible
109              DicomHandler implements GetDicomD    105              DicomHandler implements GetDicomData{Path,File}
110                which provides a fallback path     106                which provides a fallback path to data libraries
111                directory for DICOM2 and handle    107                directory for DICOM2 and handles DICOM_USE_HEAD situation
112              Phantom parameterization classes     108              Phantom parameterization classes take an argument
113                specifying color file              109                specifying color file
114              fDcmrun is protected instead of p    110              fDcmrun is protected instead of private (for DICOM2)
115              DicomEventAction doesn't print ev    111              DicomEventAction doesn't print every event
116              Removed DicomRun::RecordEvent inc    112              Removed DicomRun::RecordEvent incrementing numberOfEvent
117                (done by G4Run::RecordEvent)       113                (done by G4Run::RecordEvent)
118              Cleaned up output (when provided     114              Cleaned up output (when provided along with DICOM2 output
119                it was too excessive) now just     115                it was too excessive) now just a summary is provided
120                and per-voxel is output to file    116                and per-voxel is output to file only
121              Moved Data.dat to Data.dat.old an    117              Moved Data.dat to Data.dat.old and CMake copies correct
122                Data.dat.{old,new} to Data.dat     118                Data.dat.{old,new} to Data.dat in binary directory based
123                on DICOM_USE_DCMTK setting         119                on DICOM_USE_DCMTK setting
124              Updated README                       120              Updated README
125                                                   121 
126 09.11.2018 - Gabriele Cosmo (DICOM-V10-04-04)     122 09.11.2018 - Gabriele Cosmo (DICOM-V10-04-04)
127              Use canonical definition for DICO    123              Use canonical definition for DICOMRunAction; removed wrong
128              singleton specification (in any c    124              singleton specification (in any case not necessary).
129                                                   125 
130 22.06.2018 - Jonathan Madsen (DICOM-V10-04-03)    126 22.06.2018 - Jonathan Madsen (DICOM-V10-04-03)
131              Added dicomReader/cmake/DICOMUtil    127              Added dicomReader/cmake/DICOMUtilities.cmake that defines
132              a DICOM_BUILD_LIBRARY macro which    128              a DICOM_BUILD_LIBRARY macro which handles how to build
133              DICOM-library (and dicomReader li    129              DICOM-library (and dicomReader library if USE_DICOM_DCMTK=ON)
134              based on the Geant4 installation     130              based on the Geant4 installation (e.g. build shared, static, or
135              both) + updates to DICOMConfig.cm    131              both) + updates to DICOMConfig.cmake.in and
136              dicomReaderConfig.cmake.in to han    132              dicomReaderConfig.cmake.in to handle which library type to
137              use link to                          133              use link to
138                                                   134 
139 20.05.2018 - John Allison (DICOM-V10-04-02)       135 20.05.2018 - John Allison (DICOM-V10-04-02)
140              Remove G4UI_USE and G4VIS_USE.       136              Remove G4UI_USE and G4VIS_USE.
141              Move instantiation of G4UIExecuti    137              Move instantiation of G4UIExecutive to start of main.
142                                                   138 
143 09.05.2018 - Ben Morgan (DICOM-V10-04-01)         139 09.05.2018 - Ben Morgan (DICOM-V10-04-01)
144              Include G4Types before use of G4M    140              Include G4Types before use of G4MULTITHREADED. For forward
145              compatibility with move to #defin    141              compatibility with move to #defines over -D for G4 preprocessor
146              symbols.                             142              symbols.
147                                                   143 
148 20.03.2018 - Jonathan Madsen (DICOM-V10-04-00)    144 20.03.2018 - Jonathan Madsen (DICOM-V10-04-00)
149              Enabled CMake package configurati    145              Enabled CMake package configuration
150              Added DICOM_USE_DCMTK and DICOM_U    146              Added DICOM_USE_DCMTK and DICOM_USE_HEAD CMake
151               options back-compat with environ    147               options back-compat with environment variables
152              Updated README and .README.txt       148              Updated README and .README.txt
153                                                   149 
154 11.11.2017 - Marc Verderi (DICOM-V10-03-12)       150 11.11.2017 - Marc Verderi (DICOM-V10-03-12)
155              Retag as DICOM-V10-03-11 too quic    151              Retag as DICOM-V10-03-11 too quickly rejected
156                                                   152 
157 09.11.2017 - Ivana Hrivnacova (DICOM-V10-03-11    153 09.11.2017 - Ivana Hrivnacova (DICOM-V10-03-11)
158              Updated DICOM data version to 1.1    154              Updated DICOM data version to 1.1
159                                                   155 
160 09.11.2017 - S. Guatelli (DICOM-V10-03-10)        156 09.11.2017 - S. Guatelli (DICOM-V10-03-10)
161              Updated README and .README.txt       157              Updated README and .README.txt
162                                                   158 
163 09.11.2017 - S. Guatelli (DICOM-V10-03-09)        159 09.11.2017 - S. Guatelli (DICOM-V10-03-09)
164              .g4dmc created in the user direct    160              .g4dmc created in the user directory and not in the DICOM library,
165              together with the .g4dcmb files.     161              together with the .g4dcmb files.
166                                                   162 
167 09.11.2017 - S. Guatelli (DICOM-V10-03-08)        163 09.11.2017 - S. Guatelli (DICOM-V10-03-08)
168              DICOM_PATH changed                   164              DICOM_PATH changed
169              no writing .g4dcmb in the library    165              no writing .g4dcmb in the library DICOM
170                                                   166 
171 08.11.2017 - Ivana Hrivnacova (DICOM-V10-03-07    167 08.11.2017 - Ivana Hrivnacova (DICOM-V10-03-07)
172              Added downloading DICOM data in C    168              Added downloading DICOM data in CMake build
173              (used only with DICOM_USE_HEAD op    169              (used only with DICOM_USE_HEAD option)
174                                                   170 
175 07.11.2017 - S. Guatelli (DICOM-V10-03-06).       171 07.11.2017 - S. Guatelli (DICOM-V10-03-06).
176              Warning deleted, updated README a    172              Warning deleted, updated README and .README.txt
177                                                   173 
178 01.11.2017 - S. Guatelli (DICOM-V10-03-05).       174 01.11.2017 - S. Guatelli (DICOM-V10-03-05).
179              DICOM_HEAD library can be used as    175              DICOM_HEAD library can be used as input to the DICOM
180              DICOM_v1 does not need to be copi    176              DICOM_v1 does not need to be copied in the directory where the simulation is executed
181                                                   177 
182 01.11.2017 - S. Guatelli (DICOM-V10-03-04). DI    178 01.11.2017 - S. Guatelli (DICOM-V10-03-04). DICOM_HEAD library can be used as input to the DICOM
183                                                   179 
184 28.09.2017 - S. Guatelli (DICOM-V10-03-03). DI    180 28.09.2017 - S. Guatelli (DICOM-V10-03-03). DICOM_HEAD Directory deleted
185                                                   181 
186 16.09.2017 - S. Guatelli (DICOM-V10-03-02)        182 16.09.2017 - S. Guatelli (DICOM-V10-03-02)
187            - New DICOM Digital Head included b    183            - New DICOM Digital Head included by S. Guatelli
188            - Updated README, .README.txt          184            - Updated README, .README.txt
189                                                   185 
190 19.11.2016 - Andrea Dotti     (DICOM-V10-02-04    186 19.11.2016 - Andrea Dotti     (DICOM-V10-02-04)
191            - explicit set of SD to manager        187            - explicit set of SD to manager
192                                                   188 
193 11.11.2016 - Ivana Hrivnacova (DICOM-V10-02-03    189 11.11.2016 - Ivana Hrivnacova (DICOM-V10-02-03)
194            - Removed extra compiler flags in G    190            - Removed extra compiler flags in GNUmakefile, CMakeLists.txt
195              (not needed)                         191              (not needed)
196            - Renamed G4_USE_DCMTK in DICOM_USE    192            - Renamed G4_USE_DCMTK in DICOM_USE_DCMTK
197            - Updated README, .README.txt          193            - Updated README, .README.txt
198                                                   194 
199 11.11.2016 - Pedro Arce (DICOM-V10-02-02)         195 11.11.2016 - Pedro Arce (DICOM-V10-02-02)
200            - Complying with Geant4 guidelines     196            - Complying with Geant4 guidelines in data variables
201                                                   197 
202 04.11.2016 - Pedro Arce (DICOM-V10-02-01)         198 04.11.2016 - Pedro Arce (DICOM-V10-02-01)
203            - New DICOM reader based on DCMTK      199            - New DICOM reader based on DCMTK
204                                                   200 
205 20.07.2016 - Ivana Hrivnacova (DICOM-V10-02-00    201 20.07.2016 - Ivana Hrivnacova (DICOM-V10-02-00)
206            - Fixed coding guidelines              202            - Fixed coding guidelines
207              (redundant empty lines, class dat    203              (redundant empty lines, class data member names)
208                                                   204 
209 17.09.2015 - Pedro Arce (DICOM-V10-01-01)         205 17.09.2015 - Pedro Arce (DICOM-V10-01-01)
210            - Fixed coding guidelines (long lin    206            - Fixed coding guidelines (long lines)
211                                                   207 
212 21.10.2014 - Pedro Arce (DICOM-V10-00-04)         208 21.10.2014 - Pedro Arce (DICOM-V10-00-04)
213            - Fixed coding guidelines (long lin    209            - Fixed coding guidelines (long lines)
214                                                   210 
215 16.10.2014 - Ivana Hrivnacova (DICOM-V10-00-03    211 16.10.2014 - Ivana Hrivnacova (DICOM-V10-00-03)
216            - Fixed coding guidelines (long lin    212            - Fixed coding guidelines (long lines) in
217              DicomPartialDetectorConstruction.    213              DicomPartialDetectorConstruction.hh, DicomPhantomZSliceHeader.hh
218                                                   214 
219 29.07.2014 - Pedro Arce (DICOM-V10-00-02)         215 29.07.2014 - Pedro Arce (DICOM-V10-00-02)
220            - Remove DicomPhysicsList              216            - Remove DicomPhysicsList
221                                                   217 
222 25.07.2014 - Pedro Arce (DICOM-V10-00-01)         218 25.07.2014 - Pedro Arce (DICOM-V10-00-01)
223            - Using G4GenericPhysicsList           219            - Using G4GenericPhysicsList
224          - no std::cout                           220          - no std::cout
225      - no exit()                                  221      - no exit()
226                                                   222 
227 03.12.2013 - Gabriele Cosmo (DICOM-V10-00-00)     223 03.12.2013 - Gabriele Cosmo (DICOM-V10-00-00)
228            - Attempt to fix Valgrind run-time     224            - Attempt to fix Valgrind run-time error from printout in
229              DicomHandler::CheckFileFormat().     225              DicomHandler::CheckFileFormat().
230                                                   226 
231 03.12.2013 - Ivana Hrivnacova (DICOM-V09-06-09    227 03.12.2013 - Ivana Hrivnacova (DICOM-V09-06-09)
232            - Updated README and .README to mat    228            - Updated README and .README to match (Pedro Arce)
233                                                   229 
234 18.11.2014 - Ivana Hrivnacova (DICOM-V09-06-08    230 18.11.2014 - Ivana Hrivnacova (DICOM-V09-06-08)
235            - Fixed DicomPhantomZSliceMerged.hh    231            - Fixed DicomPhantomZSliceMerged.hh file description
236              (for Doxygen)                        232              (for Doxygen)
237                                                   233 
238 13.11.2014 - Jonathan Mdsen (DICOM-V09-06-07)     234 13.11.2014 - Jonathan Mdsen (DICOM-V09-06-07)
239            - Updated README and .README           235            - Updated README and .README
240            - Fixed some comments                  236            - Fixed some comments
241                                                   237 
242 04.11.2013 - Dennis Wright  (DICOM-V09-06-06)     238 04.11.2013 - Dennis Wright  (DICOM-V09-06-06)
243            - replaced LEP model for alphas by     239            - replaced LEP model for alphas by extending Binary cascade to
244              zero energy                          240              zero energy
245            - updated sample output files to re    241            - updated sample output files to reflect this
246                                                   242 
247 23.10.2013 - Gabriele Cosmo (DICOM-V09-06-05)     243 23.10.2013 - Gabriele Cosmo (DICOM-V09-06-05)
248      - Fixed compilation warnings.                244      - Fixed compilation warnings.
249                                                   245 
250 15.10.2013 - Jonathan Madsen (DICOM-V09-06-04)    246 15.10.2013 - Jonathan Madsen (DICOM-V09-06-04)
251      - Modified DICOM to enable multithreading    247      - Modified DICOM to enable multithreading
252        - Adapted scorers                          248        - Adapted scorers
253        - Added ActionInitialization class         249        - Added ActionInitialization class
254        - Modified RunAction to handle master a    250        - Modified RunAction to handle master and daughter threads
255                                                   251 
256 09.10.2013 - Ivana Hrivnacova (DICOM-V09-06-03    252 09.10.2013 - Ivana Hrivnacova (DICOM-V09-06-03)
257            Fixed file description (DicomPhanto    253            Fixed file description (DicomPhantomZSliceMerged.hh)
258                                                   254 
259 28.08.2013 - Gabriele Cosmo (DICOM-V09-06-02)     255 28.08.2013 - Gabriele Cosmo (DICOM-V09-06-02)
260            Added G4Ellipsoid to solids enabled    256            Added G4Ellipsoid to solids enabled for parameterisation in
261            DicomNestedPhantomParameterisation.    257            DicomNestedPhantomParameterisation.
262                                                   258 
263 29.07.2013 - Peter Gumplinger (DICOM-V09-06-01    259 29.07.2013 - Peter Gumplinger (DICOM-V09-06-01)
264            Fixed MAC/clang32 compilation warni    260            Fixed MAC/clang32 compilation warnings in DicomRunAction and
265            DiconIntersectVolume classes           261            DiconIntersectVolume classes
266                                                   262 
267 18.07.2013 - Jonathan Madsen                      263 18.07.2013 - Jonathan Madsen
268            Missing documentation update from 1    264            Missing documentation update from 18.12.2012:
269              Improvements and bug-fixes ->        265              Improvements and bug-fixes ->
270              DicomHandler had some bugs when u    266              DicomHandler had some bugs when using DCM files
271                other than examples provided       267                other than examples provided
272              Added DicomPhantomZSliceMerged cl    268              Added DicomPhantomZSliceMerged class to handle
273                inconsistencies in DCM file met    269                inconsistencies in DCM file meta-data
274              DicomPhantomZSliceHeader class is    270              DicomPhantomZSliceHeader class is extended to hold density
275                and material ID data and the pr    271                and material ID data and the printing of data
276                to files instead of DicomHandle    272                to files instead of DicomHandler
277            Removed additions on 16.07.2013 pen    273            Removed additions on 16.07.2013 pending further discussion
278            Reverted DICOM example to 18.12.201    274            Reverted DICOM example to 18.12.2012 update with some very
279              minor tweaks                         275              minor tweaks
280            Kept share folder with additional a    276            Kept share folder with additional anonymous DCM files
281              and additional data files (SixSli    277              and additional data files (SixSlice.dat, AltData.dat). Rename
282              these files with Data.dat to use     278              these files with Data.dat to use
283            Kept CMakeLists.txt to copy over ex    279            Kept CMakeLists.txt to copy over extra data file and anonymous
284              DCM files                            280              DCM files
285                                                   281 
286 16.07.2013 - Jonathan Madsen                      282 16.07.2013 - Jonathan Madsen
287            Many modifications to the DICOM exa    283            Many modifications to the DICOM example.
288            Added more anonymous DICOM files.      284            Added more anonymous DICOM files.
289            Added more script configurations.      285            Added more script configurations.
290            Added DicomCommandLineOptions, Dico    286            Added DicomCommandLineOptions, DicomHelpers, DicomTypeConversion,
291              DicomOption as part of a command     287              DicomOption as part of a command line processing package.
292            Modified CMakeLists.txt to configur    288            Modified CMakeLists.txt to configure extra files.
293            Added capability to use different d    289            Added capability to use different data files for DICOM set,
294              CT2Density file, ColourMap file.     290              CT2Density file, ColourMap file.
295            Added Statistical Analysis and Stat    291            Added Statistical Analysis and Statistical Manager classes
296            Miscellaneous improvements.            292            Miscellaneous improvements.
297            DICOM.cc now has a large list of ru    293            DICOM.cc now has a large list of runtime configuration options
298              via command line.                    294              via command line.
299            Options set at command line are set    295            Options set at command line are set to override environment
300              variables.                           296              variables.
301                                                   297 
302 15.02.2013 - Ivana Hrivnacova (DICOM-V09-06-00    298 15.02.2013 - Ivana Hrivnacova (DICOM-V09-06-00)
303            Applied coding guidelines (virtual     299            Applied coding guidelines (virtual keyword, data members
304            names and initialization)              300            names and initialization)
305                                                   301 
306 07.11.2012 - Gabriele Cosmo (DICOM-V09-05-10)     302 07.11.2012 - Gabriele Cosmo (DICOM-V09-05-10)
307            Fixed compilation warnings for shad    303            Fixed compilation warnings for shadowing of variables and unused
308            return flag from system calls.         304            return flag from system calls.
309                                                   305 
310 18.10.2012 - Ivana Hrivnacova (DICOM-V09-05-09    306 18.10.2012 - Ivana Hrivnacova (DICOM-V09-05-09)
311      Updated CMakeLists.txt: added copying dat    307      Updated CMakeLists.txt: added copying data files to the build
312            area as they are needed to run the     308            area as they are needed to run the tests.
313                                                   309 
314 13.10.2012 - Andrea Dotti (DICOM-V09-05-08)       310 13.10.2012 - Andrea Dotti (DICOM-V09-05-08)
315      Removing previous tag modification (not n    311      Removing previous tag modification (not needed)
316                                                   312 
317 13.10.2012 - Andrea Dotti (DICOM-V09-05-07)       313 13.10.2012 - Andrea Dotti (DICOM-V09-05-07)
318        Adding explicit use of system of units     314        Adding explicit use of system of units
319                                                   315 
320 05.09.2012 - Ivana Hrivnacova (DICOM-V09-05-06    316 05.09.2012 - Ivana Hrivnacova (DICOM-V09-05-06)
321              Fixed compiler warning               317              Fixed compiler warning
322                                                   318 
323 04.09.2012 - Pedro Arce    (DICOM-V09-05-05)      319 04.09.2012 - Pedro Arce    (DICOM-V09-05-05)
324              Remove old renamed files             320              Remove old renamed files
325              Updated CMakeLists.txt (By I.Hriv    321              Updated CMakeLists.txt (By I.Hrivnacova)
326              Adding visualization, copying mac    322              Adding visualization, copying macros, install target and
327              comment lines                        323              comment lines
328                                                   324 
329 17.07.2012 - Ivana Hrivnacova (DICOM-V09-05-04    325 17.07.2012 - Ivana Hrivnacova (DICOM-V09-05-04)
330              Improved README files                326              Improved README files
331                                                   327 
332 06.07.2012 - Pedro Arce    (DICOM-V09-05-03)      328 06.07.2012 - Pedro Arce    (DICOM-V09-05-03)
333              Reviewed examples according to co    329              Reviewed examples according to coding guidelines
334                                                   330 
335 13.06.2012 - Gabriele Cosmo   (DICOM-V09-05-02    331 13.06.2012 - Gabriele Cosmo   (DICOM-V09-05-02)
336              Assign return value for fread() a    332              Assign return value for fread() and fscanf() calls in
337              DicomHandler. Fixes compilation w    333              DicomHandler. Fixes compilation warnings on Ubuntu.
338                                                   334 
339 28.03.2012 - Pedro Arce   (DICOM-V09-05-01)       335 28.03.2012 - Pedro Arce   (DICOM-V09-05-01)
340              Corrections in materials Z/A. Add    336              Corrections in materials Z/A. Addressing problem report #1287.
341                                                   337 
342 13.11.2011 - Pedro Arce   (DICOM-V09-04-03)       338 13.11.2011 - Pedro Arce   (DICOM-V09-04-03)
343              Migration to new G4Exception sche    339              Migration to new G4Exception scheme.
344                                                   340 
345 03.10.2011 - G.Folger   (DICOM-V09-04-02)         341 03.10.2011 - G.Folger   (DICOM-V09-04-02)
346              Fix gcc46 compilation warning in     342              Fix gcc46 compilation warning in DicomHandler.cc
347              and DicomPhantomParameterisationC    343              and DicomPhantomParameterisationColour.cc
348                                                   344 
349 05.06.2011 - Pedro Arce (DICOM-V09-04-01)         345 05.06.2011 - Pedro Arce (DICOM-V09-04-01)
350              Corrected name for sensitive dete    346              Corrected name for sensitive detector to be consistently
351              named as "phantomSD" in DicomRunA    347              named as "phantomSD" in DicomRunAction. Addressing problem
352              report #1210.                        348              report #1210.
353              Corrected axis slicing hint in ne    349              Corrected axis slicing hint in nested-parameterisation.
354                                                   350 
355 23.12.2010 - Stephane Chauvie                     351 23.12.2010 - Stephane Chauvie
356              Corrected 2 bugs in DicomHandler     352              Corrected 2 bugs in DicomHandler
357                                                   353 
358 30.11.2010 - John Allison                         354 30.11.2010 - John Allison
359              dicom.cc: Removed redundant heade    355              dicom.cc: Removed redundant headers:
360              "G4UIterminal.hh" and "G4UItcsh.h    356              "G4UIterminal.hh" and "G4UItcsh.hh".
361                                                   357 
362 30.11.2010 - Ivana Hrivnacova (DICOM-V09-03-09    358 30.11.2010 - Ivana Hrivnacova (DICOM-V09-03-09)
363              Moved inclusion of vis headers as    359              Moved inclusion of vis headers as last in main().
364                                                   360 
365 26.11.2010 - Pedro Arce (DICOM-V09-03-08)         361 26.11.2010 - Pedro Arce (DICOM-V09-03-08)
366        Correction of warnings                     362        Correction of warnings
367                                                   363 
368 24.11.2010 - Pedro Arce (DICOM-V09-03-07)         364 24.11.2010 - Pedro Arce (DICOM-V09-03-07)
369        Introduced partial phantom example         365        Introduced partial phantom example
370        Delete G4PSDoseDeposit_RegNav and use G    366        Delete G4PSDoseDeposit_RegNav and use G4ScoreSplittingProcess instead
371                                                   367 
372 11.11.2010 - Gabriele Cosmo (DICOM-V09-03-06)     368 11.11.2010 - Gabriele Cosmo (DICOM-V09-03-06)
373              Corrected vis.mac macro and set O    369              Corrected vis.mac macro and set OGL as default viewer.
374              Corrected some printouts in code.    370              Corrected some printouts in code...
375                                                   371 
376 09.11.2010 - Gabriele Cosmo (DICOM-V09-03-05)     372 09.11.2010 - Gabriele Cosmo (DICOM-V09-03-05)
377              Fixed compilation warning on virt    373              Fixed compilation warning on virtual methods hiding
378              Fixed compilation warnings in Dic    374              Fixed compilation warnings in DicomPhantomParameterisationColour
379              and DicomHandler.                    375              and DicomHandler.
380                                                   376 
381 02.11.2010 - John Allison (DICOM-V09-03-04)       377 02.11.2010 - John Allison (DICOM-V09-03-04)
382              Introduced G4UIExecutive.            378              Introduced G4UIExecutive.
383                                                   379 
384 06.06.2010 - Joseph Perl (DICOM-V09-03-03)        380 06.06.2010 - Joseph Perl (DICOM-V09-03-03)
385        Remove unused variable in EventAction      381        Remove unused variable in EventAction
386                                                   382 
387 03.06.2010 - Joseph Perl (DICOM-V09-03-02)        383 03.06.2010 - Joseph Perl (DICOM-V09-03-02)
388        Updated vis usage                          384        Updated vis usage
389                                                   385 
390 19.11.2009 - StÈphane Chauvie (DICOM-V09-03-0    386 19.11.2009 - StÈphane Chauvie (DICOM-V09-03-00)
391 01.06.2010 - Stephane Chauvie - Andrea Armando    387 01.06.2010 - Stephane Chauvie - Andrea Armando
392        Added function to read nested items (de    388        Added function to read nested items (defined and undefined)
393        Removed dependencies on CONQUEST           389        Removed dependencies on CONQUEST
394        DICOM handler could now read whichever     390        DICOM handler could now read whichever DICOM file
395              (PT,CT,DR,CR,US,MR... )              391              (PT,CT,DR,CR,US,MR... )
396                                                   392 
397 19.11.2009 - Stephanee Chauvie (DICOM-V09-02-0    393 19.11.2009 - Stephanee Chauvie (DICOM-V09-02-03)
398        Changed DICOM Handler to read CT files     394        Changed DICOM Handler to read CT files coming from CONQUEST
399              DICOM server                         395              DICOM server
400                                                   396 
401 05.02.2009 - Pedro Arce (DICOM-V09-02-01)         397 05.02.2009 - Pedro Arce (DICOM-V09-02-01)
402              Added report on dose per voxel.      398              Added report on dose per voxel.
403              Added warning for erroneous inclu    399              Added warning for erroneous inclusion of development code in
404              release 9.2 (to be removed when f    400              release 9.2 (to be removed when fix will be included in patch).
405                                                   401 
406 27.01.2009 - Gabriele Cosmo (DICOM-V09-02-00)     402 27.01.2009 - Gabriele Cosmo (DICOM-V09-02-00)
407              Use new class G4RegularNavigation    403              Use new class G4RegularNavigationHistory for counting of step
408              lengths in voxels of the regular     404              lengths in voxels of the regular structure.
409                                                   405 
410 27.11.2008 - Pedro Arce (DICOM-V09-01-02)         406 27.11.2008 - Pedro Arce (DICOM-V09-01-02)
411              Included G4PSDoseDeposit_RegNav t    407              Included G4PSDoseDeposit_RegNav to distribute dose along voxels,
412        including msc and energy loss correctio    408        including msc and energy loss corrections, for the case of
413        skipping voxel with equal materials whe    409        skipping voxel with equal materials when using regular
414        navigation                                 410        navigation
415                                                   411 
416 21.07.2008 - Pedro Arce (DICOM-V09-01-01)         412 21.07.2008 - Pedro Arce (DICOM-V09-01-01)
417              Bug fix in DicomNestedPhantomPara    413              Bug fix in DicomNestedPhantomParameterisation in calculating the
418              'copyNo', so that material assign    414              'copyNo', so that material assignment was wrong
419              Set default cut to 1 mm (with pre    415              Set default cut to 1 mm (with previous 1.E-3 mm too much time is
420              spent on physics and no improveme    416              spent on physics and no improvement is seen with different
421              navigation options).                 417              navigation options).
422              Corrected direction and position     418              Corrected direction and position of primary particles so that
423              they traverse the DICOM voxels.      419              they traverse the DICOM voxels.
424                                                   420 
425 22.01.2008 - Pedro Arce (DICOM-V09-01-00)         421 22.01.2008 - Pedro Arce (DICOM-V09-01-00)
426              Do not use 'rindex' in DicomHandl    422              Do not use 'rindex' in DicomHandler class to avoid problems
427              on Windows.                          423              on Windows.
428                                                   424 
429 06.12.2007 - Pedro Arce                           425 06.12.2007 - Pedro Arce
430              Added voxel colouring by material    426              Added voxel colouring by material. Added possibility to use nested parameterisation
431                                                   427 
432 05.12.2007 - Pedro Arce                           428 05.12.2007 - Pedro Arce
433              Deep review on the input files an    429              Deep review on the input files and the way how the geometry is built.
434              Use of G4PhantomParameterisation     430              Use of G4PhantomParameterisation and G4RegularNavigation.
435                                                   431 
436 06.12.2005 - Gabriele Cosmo                       432 06.12.2005 - Gabriele Cosmo
437              Trivial changes for support of CL    433              Trivial changes for support of CLHEP-2.0.X series.
438                                                   434 
439 29.11.2005 - Susanna Guatelli (DICOM-V07-01-00    435 29.11.2005 - Susanna Guatelli (DICOM-V07-01-00)
440              Documentation update                 436              Documentation update
441                                                   437 
442 12.06.2005 - Stephane Chauvie (DICOM-V07-00-01    438 12.06.2005 - Stephane Chauvie (DICOM-V07-00-01)
443              Added improvement by Akinori Kimu    439              Added improvement by Akinori Kimura.
444                                                   440 
445 03.05.2005 - John Allison                         441 03.05.2005 - John Allison
446              Replaced vis manager with G4VisEx    442              Replaced vis manager with G4VisExecutive.
447                                                   443 
448 10.12.2004 - Maria Grazia Pia (DICOM-V06-02-02    444 10.12.2004 - Maria Grazia Pia (DICOM-V06-02-02)
449              Update README to announce further    445              Update README to announce further improvements and fixes
450              by Akinori Kimura.                   446              by Akinori Kimura.
451                                                   447 
452 3.12.2004 - Gabriele Cosmo (DICOM-V06-02-01)      448 3.12.2004 - Gabriele Cosmo (DICOM-V06-02-01)
453             Implemented migration to <cmath>.     449             Implemented migration to <cmath>.
454                                                   450 
455 13.5.2004 - Susanna Guatelli                      451 13.5.2004 - Susanna Guatelli
456             updated compiler: gcc3.2.3            452             updated compiler: gcc3.2.3
457                                                   453 
458 11.3.2003 - Susanna Guatelli                      454 11.3.2003 - Susanna Guatelli
459             README changed                        455             README changed
460                                                   456 
461 6.2003 - Susanna Guatelli                         457 6.2003 - Susanna Guatelli
462          First public release of the example      458          First public release of the example