Geant4 Cross Reference

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Geant4/examples/extended/medical/DICOM/History

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Diff markup

Differences between /examples/extended/medical/DICOM/History (Version 11.3.0) and /examples/extended/medical/DICOM/History (Version 11.1.3)


  1 # Example DICOM History                             1 # Example DICOM History
  2                                                     2 
  3 See `CONTRIBUTING.rst` for details of **requir      3 See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
  4 which **must** added in reverse chronological       4 which **must** added in reverse chronological order (newest at the top).
  5 It must **not** be used as a substitute for wr      5 It must **not** be used as a substitute for writing good git commit messages!
  6                                                     6 
  7 ----------------------------------------------      7 -------------------------------------------------------------------------------
  8                                                     8 
  9 ## 2024-06-05 L. T. Anh (DICOM-V11-02-00)      << 
 10 - Correct symbols for Chlorine and Potassium e << 
 11   InitialisationOfMaterials().                 << 
 12                                                << 
 13 ## 2023-12-03 A. Howard (DICOM-V11-01-02)      << 
 14 - Modified DicomDetectorConstruction: added co << 
 15   of G4PSDoseDeposit3D for nested parameterisa << 
 16   according to the fixed formula within G4PSDo << 
 17   variable to switch to standard G4PSDoseDepos << 
 18   navigation (default).                        << 
 19 - Updated README and .README to be more correc << 
 20   G4PSDoseDeposit3D and its usage for nested p << 
 21                                                << 
 22 ## 2023-11-25 C. Mancini (DICOM-V11-01-01)     << 
 23 - Modified DicomNestedPhantomParameterisation: << 
 24   from the  "G4Material* mate" instantiation.  << 
 25                                                << 
 26 ## 2023-09-02 Gabriele Cosmo (DICOM-V11-01-00) << 
 27 - Removed forward declaration for G4VTouchable << 
 28                                                << 
 29 ## 2022-10-04 John Allison (DICOM-V11-00-04)        9 ## 2022-10-04 John Allison (DICOM-V11-00-04)
 30 - Introduce special mesh rendering of DICOM im     10 - Introduce special mesh rendering of DICOM image.
 31                                                    11 
 32 ## 2022-10-24 I. Hrivnacova  (DICOM-V11-00-03)     12 ## 2022-10-24 I. Hrivnacova  (DICOM-V11-00-03)
 33 - Coding guidelines: start data member with 'f     13 - Coding guidelines: start data member with 'f'; use G4int, G4double
 34   (skipped dicomReader classes).               <<  14   (skipped dicomReader classes)
 35                                                    15 
 36 ## 2022-10-04 Ben Morgan (DICOM-V11-00-02)         16 ## 2022-10-04 Ben Morgan (DICOM-V11-00-02)
 37 - Replace sprintf with direct G4String use to  <<  17 - Replace sprintf with direct G4String use to remove deprecation warnings on macOS 13 
 38   macOS-13.                                    << 
 39                                                    18 
 40 ## 2022-10-04 Gabriele Cosmo (DICOM-V11-00-01)     19 ## 2022-10-04 Gabriele Cosmo (DICOM-V11-00-01)
 41 - Fixed compilation warning on Intel-icx compi     20 - Fixed compilation warning on Intel-icx compiler for set but unused variable
 42   in DicomHandler::ReadData().                     21   in DicomHandler::ReadData().
 43                                                    22 
 44 ## 2021-12-10 Ben Morgan (DICOM-V11-00-00)         23 ## 2021-12-10 Ben Morgan (DICOM-V11-00-00)
 45 - Change to new Markdown History format.       <<  24 - Change to new Markdown History format
 46                                                    25 
 47 ---                                                26 ---
 48                                                    27 
 49 # History entries prior to 11.0                    28 # History entries prior to 11.0
 50                                                    29 
 51 27.09.2021  Pedro Arce (DICOM-V10-07-01)           30 27.09.2021  Pedro Arce (DICOM-V10-07-01)
 52 - Use updated interface from geomnav to use G4     31 - Use updated interface from geomnav to use G4PhantomParameterisation::GetNoVoxels instead of GetNoVoxel
 53                                                    32 
 54 31.12.2020 - John Allison (DICOM-V10-07-00)        33 31.12.2020 - John Allison (DICOM-V10-07-00)
 55              vis.mac: "Change /vis/ogl/set/eve     34              vis.mac: "Change /vis/ogl/set/eventsDrawInterval" to
 56              "/vis/ogl/flushAt NthPrimitive".      35              "/vis/ogl/flushAt NthPrimitive".
 57                                                    36 
 58 10.11.2020 - Ben Morgan (DICOM-V10-06-01)          37 10.11.2020 - Ben Morgan (DICOM-V10-06-01)
 59              Migration to G4RunManagerFactory.     38              Migration to G4RunManagerFactory.
 60                                                    39 
 61 21.10.2020 - Ben Morgan (DICOM-V10-06-00)          40 21.10.2020 - Ben Morgan (DICOM-V10-06-00)
 62              Distinguish output names of archi     41              Distinguish output names of archive lib from DLL and application to
 63              fix Windows LNK1149 errors for st     42              fix Windows LNK1149 errors for static libs.
 64              Modernize cmake version detection     43              Modernize cmake version detection and policy setting to follow main
 65              Geant4 usage.                         44              Geant4 usage.
 66                                                    45 
 67 19.11.2019 - Gabriele Cosmo (DICOM-V10-05-03)      46 19.11.2019 - Gabriele Cosmo (DICOM-V10-05-03)
 68              Fixed more cases of implicit type     47              Fixed more cases of implicit type conversions.
 69              Some minor code cleanup.              48              Some minor code cleanup.
 70                                                    49 
 71 15.11.2019 - Gabriele Cosmo (DICOM-V10-05-02)      50 15.11.2019 - Gabriele Cosmo (DICOM-V10-05-02)
 72              Fixed cases of implicit type conv     51              Fixed cases of implicit type conversions from size_t to G4int.
 73                                                    52 
 74 12.11.2019 - Gunter Folger (DICOM-V10-05-01)       53 12.11.2019 - Gunter Folger (DICOM-V10-05-01)
 75              Correct DicomHandler singleton fo     54              Correct DicomHandler singleton for use on Windows.
 76        DICOM2 was crashing                         55        DICOM2 was crashing
 77                                                    56 
 78 08.06.2019 - Gabriele Cosmo (DICOM-V10-05-00)      57 08.06.2019 - Gabriele Cosmo (DICOM-V10-05-00)
 79              Defaulted copy-ctr in DicomPhanto     58              Defaulted copy-ctr in DicomPhantomZSliceHeader, to fix deprecation
 80              compilation warnings on gcc-9.1.      59              compilation warnings on gcc-9.1.
 81                                                    60 
 82 13.11.2018 - Jonathan Madsen (DICOM-V10-04-11)     61 13.11.2018 - Jonathan Madsen (DICOM-V10-04-11)
 83              Bugfix (2102) to DicomHandler rea     62              Bugfix (2102) to DicomHandler reading fPixelSpacingY
 84                                                    63 
 85 13.11.2018 - Jonathan Madsen (DICOM-V10-04-10)     64 13.11.2018 - Jonathan Madsen (DICOM-V10-04-10)
 86              Bugfix (2101) to DicomHandler ski     65              Bugfix (2101) to DicomHandler skipping 2 bytes in implicit VR
 87                                                    66 
 88 12.11.2018 - Jonathan Madsen (DICOM-V10-04-09)     67 12.11.2018 - Jonathan Madsen (DICOM-V10-04-09)
 89              Updated DICOMUtilities.cmake to h     68              Updated DICOMUtilities.cmake to handle Windows builds
 90              Using modern CMake DICOM::target      69              Using modern CMake DICOM::target library alias
 91                                                    70 
 92 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-08)      71 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-08)
 93              DicomDetectorConstruction: remove     72              DicomDetectorConstruction: removed useless static Instance()
 94              method.                               73              method.
 95                                                    74 
 96 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-07)      75 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-07)
 97              DicomPartialDetectorConstruction:     76              DicomPartialDetectorConstruction: fixed shadowing of base class
 98              data for 'fMateIDs'. Fixed type c     77              data for 'fMateIDs'. Fixed type conversion unsigned_int -> int.
 99                                                    78 
100 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-06)      79 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-06)
101              DicomNestedPhantomParameterisatio     80              DicomNestedPhantomParameterisation: removed useless statement
102              causing compilation error on Linu     81              causing compilation error on Linux.
103                                                    82 
104 10.11.2018 - Jonathan Madsen (DICOM-V10-04-05)     83 10.11.2018 - Jonathan Madsen (DICOM-V10-04-05)
105              DICOMConfig.cmake.in handles DICO     84              DICOMConfig.cmake.in handles DICOM_USE_HEAD being set
106              DownloadDICOMData.cmake does inst     85              DownloadDICOMData.cmake does installation
107              CMakeLists.txt creates build-tree     86              CMakeLists.txt creates build-tree export
108              DicomDetectorConstruction is glob     87              DicomDetectorConstruction is globally accessible
109              DicomHandler implements GetDicomD     88              DicomHandler implements GetDicomData{Path,File}
110                which provides a fallback path      89                which provides a fallback path to data libraries
111                directory for DICOM2 and handle     90                directory for DICOM2 and handles DICOM_USE_HEAD situation
112              Phantom parameterization classes      91              Phantom parameterization classes take an argument
113                specifying color file               92                specifying color file
114              fDcmrun is protected instead of p     93              fDcmrun is protected instead of private (for DICOM2)
115              DicomEventAction doesn't print ev     94              DicomEventAction doesn't print every event
116              Removed DicomRun::RecordEvent inc     95              Removed DicomRun::RecordEvent incrementing numberOfEvent
117                (done by G4Run::RecordEvent)        96                (done by G4Run::RecordEvent)
118              Cleaned up output (when provided      97              Cleaned up output (when provided along with DICOM2 output
119                it was too excessive) now just      98                it was too excessive) now just a summary is provided
120                and per-voxel is output to file     99                and per-voxel is output to file only
121              Moved Data.dat to Data.dat.old an    100              Moved Data.dat to Data.dat.old and CMake copies correct
122                Data.dat.{old,new} to Data.dat     101                Data.dat.{old,new} to Data.dat in binary directory based
123                on DICOM_USE_DCMTK setting         102                on DICOM_USE_DCMTK setting
124              Updated README                       103              Updated README
125                                                   104 
126 09.11.2018 - Gabriele Cosmo (DICOM-V10-04-04)     105 09.11.2018 - Gabriele Cosmo (DICOM-V10-04-04)
127              Use canonical definition for DICO    106              Use canonical definition for DICOMRunAction; removed wrong
128              singleton specification (in any c    107              singleton specification (in any case not necessary).
129                                                   108 
130 22.06.2018 - Jonathan Madsen (DICOM-V10-04-03)    109 22.06.2018 - Jonathan Madsen (DICOM-V10-04-03)
131              Added dicomReader/cmake/DICOMUtil    110              Added dicomReader/cmake/DICOMUtilities.cmake that defines
132              a DICOM_BUILD_LIBRARY macro which    111              a DICOM_BUILD_LIBRARY macro which handles how to build
133              DICOM-library (and dicomReader li    112              DICOM-library (and dicomReader library if USE_DICOM_DCMTK=ON)
134              based on the Geant4 installation     113              based on the Geant4 installation (e.g. build shared, static, or
135              both) + updates to DICOMConfig.cm    114              both) + updates to DICOMConfig.cmake.in and
136              dicomReaderConfig.cmake.in to han    115              dicomReaderConfig.cmake.in to handle which library type to
137              use link to                          116              use link to
138                                                   117 
139 20.05.2018 - John Allison (DICOM-V10-04-02)       118 20.05.2018 - John Allison (DICOM-V10-04-02)
140              Remove G4UI_USE and G4VIS_USE.       119              Remove G4UI_USE and G4VIS_USE.
141              Move instantiation of G4UIExecuti    120              Move instantiation of G4UIExecutive to start of main.
142                                                   121 
143 09.05.2018 - Ben Morgan (DICOM-V10-04-01)         122 09.05.2018 - Ben Morgan (DICOM-V10-04-01)
144              Include G4Types before use of G4M    123              Include G4Types before use of G4MULTITHREADED. For forward
145              compatibility with move to #defin    124              compatibility with move to #defines over -D for G4 preprocessor
146              symbols.                             125              symbols.
147                                                   126 
148 20.03.2018 - Jonathan Madsen (DICOM-V10-04-00)    127 20.03.2018 - Jonathan Madsen (DICOM-V10-04-00)
149              Enabled CMake package configurati    128              Enabled CMake package configuration
150              Added DICOM_USE_DCMTK and DICOM_U    129              Added DICOM_USE_DCMTK and DICOM_USE_HEAD CMake
151               options back-compat with environ    130               options back-compat with environment variables
152              Updated README and .README.txt       131              Updated README and .README.txt
153                                                   132 
154 11.11.2017 - Marc Verderi (DICOM-V10-03-12)       133 11.11.2017 - Marc Verderi (DICOM-V10-03-12)
155              Retag as DICOM-V10-03-11 too quic    134              Retag as DICOM-V10-03-11 too quickly rejected
156                                                   135 
157 09.11.2017 - Ivana Hrivnacova (DICOM-V10-03-11    136 09.11.2017 - Ivana Hrivnacova (DICOM-V10-03-11)
158              Updated DICOM data version to 1.1    137              Updated DICOM data version to 1.1
159                                                   138 
160 09.11.2017 - S. Guatelli (DICOM-V10-03-10)        139 09.11.2017 - S. Guatelli (DICOM-V10-03-10)
161              Updated README and .README.txt       140              Updated README and .README.txt
162                                                   141 
163 09.11.2017 - S. Guatelli (DICOM-V10-03-09)        142 09.11.2017 - S. Guatelli (DICOM-V10-03-09)
164              .g4dmc created in the user direct    143              .g4dmc created in the user directory and not in the DICOM library,
165              together with the .g4dcmb files.     144              together with the .g4dcmb files.
166                                                   145 
167 09.11.2017 - S. Guatelli (DICOM-V10-03-08)        146 09.11.2017 - S. Guatelli (DICOM-V10-03-08)
168              DICOM_PATH changed                   147              DICOM_PATH changed
169              no writing .g4dcmb in the library    148              no writing .g4dcmb in the library DICOM
170                                                   149 
171 08.11.2017 - Ivana Hrivnacova (DICOM-V10-03-07    150 08.11.2017 - Ivana Hrivnacova (DICOM-V10-03-07)
172              Added downloading DICOM data in C    151              Added downloading DICOM data in CMake build
173              (used only with DICOM_USE_HEAD op    152              (used only with DICOM_USE_HEAD option)
174                                                   153 
175 07.11.2017 - S. Guatelli (DICOM-V10-03-06).       154 07.11.2017 - S. Guatelli (DICOM-V10-03-06).
176              Warning deleted, updated README a    155              Warning deleted, updated README and .README.txt
177                                                   156 
178 01.11.2017 - S. Guatelli (DICOM-V10-03-05).       157 01.11.2017 - S. Guatelli (DICOM-V10-03-05).
179              DICOM_HEAD library can be used as    158              DICOM_HEAD library can be used as input to the DICOM
180              DICOM_v1 does not need to be copi    159              DICOM_v1 does not need to be copied in the directory where the simulation is executed
181                                                   160 
182 01.11.2017 - S. Guatelli (DICOM-V10-03-04). DI    161 01.11.2017 - S. Guatelli (DICOM-V10-03-04). DICOM_HEAD library can be used as input to the DICOM
183                                                   162 
184 28.09.2017 - S. Guatelli (DICOM-V10-03-03). DI    163 28.09.2017 - S. Guatelli (DICOM-V10-03-03). DICOM_HEAD Directory deleted
185                                                   164 
186 16.09.2017 - S. Guatelli (DICOM-V10-03-02)        165 16.09.2017 - S. Guatelli (DICOM-V10-03-02)
187            - New DICOM Digital Head included b    166            - New DICOM Digital Head included by S. Guatelli
188            - Updated README, .README.txt          167            - Updated README, .README.txt
189                                                   168 
190 19.11.2016 - Andrea Dotti     (DICOM-V10-02-04    169 19.11.2016 - Andrea Dotti     (DICOM-V10-02-04)
191            - explicit set of SD to manager        170            - explicit set of SD to manager
192                                                   171 
193 11.11.2016 - Ivana Hrivnacova (DICOM-V10-02-03    172 11.11.2016 - Ivana Hrivnacova (DICOM-V10-02-03)
194            - Removed extra compiler flags in G    173            - Removed extra compiler flags in GNUmakefile, CMakeLists.txt
195              (not needed)                         174              (not needed)
196            - Renamed G4_USE_DCMTK in DICOM_USE    175            - Renamed G4_USE_DCMTK in DICOM_USE_DCMTK
197            - Updated README, .README.txt          176            - Updated README, .README.txt
198                                                   177 
199 11.11.2016 - Pedro Arce (DICOM-V10-02-02)         178 11.11.2016 - Pedro Arce (DICOM-V10-02-02)
200            - Complying with Geant4 guidelines     179            - Complying with Geant4 guidelines in data variables
201                                                   180 
202 04.11.2016 - Pedro Arce (DICOM-V10-02-01)         181 04.11.2016 - Pedro Arce (DICOM-V10-02-01)
203            - New DICOM reader based on DCMTK      182            - New DICOM reader based on DCMTK
204                                                   183 
205 20.07.2016 - Ivana Hrivnacova (DICOM-V10-02-00    184 20.07.2016 - Ivana Hrivnacova (DICOM-V10-02-00)
206            - Fixed coding guidelines              185            - Fixed coding guidelines
207              (redundant empty lines, class dat    186              (redundant empty lines, class data member names)
208                                                   187 
209 17.09.2015 - Pedro Arce (DICOM-V10-01-01)         188 17.09.2015 - Pedro Arce (DICOM-V10-01-01)
210            - Fixed coding guidelines (long lin    189            - Fixed coding guidelines (long lines)
211                                                   190 
212 21.10.2014 - Pedro Arce (DICOM-V10-00-04)         191 21.10.2014 - Pedro Arce (DICOM-V10-00-04)
213            - Fixed coding guidelines (long lin    192            - Fixed coding guidelines (long lines)
214                                                   193 
215 16.10.2014 - Ivana Hrivnacova (DICOM-V10-00-03    194 16.10.2014 - Ivana Hrivnacova (DICOM-V10-00-03)
216            - Fixed coding guidelines (long lin    195            - Fixed coding guidelines (long lines) in
217              DicomPartialDetectorConstruction.    196              DicomPartialDetectorConstruction.hh, DicomPhantomZSliceHeader.hh
218                                                   197 
219 29.07.2014 - Pedro Arce (DICOM-V10-00-02)         198 29.07.2014 - Pedro Arce (DICOM-V10-00-02)
220            - Remove DicomPhysicsList              199            - Remove DicomPhysicsList
221                                                   200 
222 25.07.2014 - Pedro Arce (DICOM-V10-00-01)         201 25.07.2014 - Pedro Arce (DICOM-V10-00-01)
223            - Using G4GenericPhysicsList           202            - Using G4GenericPhysicsList
224          - no std::cout                           203          - no std::cout
225      - no exit()                                  204      - no exit()
226                                                   205 
227 03.12.2013 - Gabriele Cosmo (DICOM-V10-00-00)     206 03.12.2013 - Gabriele Cosmo (DICOM-V10-00-00)
228            - Attempt to fix Valgrind run-time     207            - Attempt to fix Valgrind run-time error from printout in
229              DicomHandler::CheckFileFormat().     208              DicomHandler::CheckFileFormat().
230                                                   209 
231 03.12.2013 - Ivana Hrivnacova (DICOM-V09-06-09    210 03.12.2013 - Ivana Hrivnacova (DICOM-V09-06-09)
232            - Updated README and .README to mat    211            - Updated README and .README to match (Pedro Arce)
233                                                   212 
234 18.11.2014 - Ivana Hrivnacova (DICOM-V09-06-08    213 18.11.2014 - Ivana Hrivnacova (DICOM-V09-06-08)
235            - Fixed DicomPhantomZSliceMerged.hh    214            - Fixed DicomPhantomZSliceMerged.hh file description
236              (for Doxygen)                        215              (for Doxygen)
237                                                   216 
238 13.11.2014 - Jonathan Mdsen (DICOM-V09-06-07)     217 13.11.2014 - Jonathan Mdsen (DICOM-V09-06-07)
239            - Updated README and .README           218            - Updated README and .README
240            - Fixed some comments                  219            - Fixed some comments
241                                                   220 
242 04.11.2013 - Dennis Wright  (DICOM-V09-06-06)     221 04.11.2013 - Dennis Wright  (DICOM-V09-06-06)
243            - replaced LEP model for alphas by     222            - replaced LEP model for alphas by extending Binary cascade to
244              zero energy                          223              zero energy
245            - updated sample output files to re    224            - updated sample output files to reflect this
246                                                   225 
247 23.10.2013 - Gabriele Cosmo (DICOM-V09-06-05)     226 23.10.2013 - Gabriele Cosmo (DICOM-V09-06-05)
248      - Fixed compilation warnings.                227      - Fixed compilation warnings.
249                                                   228 
250 15.10.2013 - Jonathan Madsen (DICOM-V09-06-04)    229 15.10.2013 - Jonathan Madsen (DICOM-V09-06-04)
251      - Modified DICOM to enable multithreading    230      - Modified DICOM to enable multithreading
252        - Adapted scorers                          231        - Adapted scorers
253        - Added ActionInitialization class         232        - Added ActionInitialization class
254        - Modified RunAction to handle master a    233        - Modified RunAction to handle master and daughter threads
255                                                   234 
256 09.10.2013 - Ivana Hrivnacova (DICOM-V09-06-03    235 09.10.2013 - Ivana Hrivnacova (DICOM-V09-06-03)
257            Fixed file description (DicomPhanto    236            Fixed file description (DicomPhantomZSliceMerged.hh)
258                                                   237 
259 28.08.2013 - Gabriele Cosmo (DICOM-V09-06-02)     238 28.08.2013 - Gabriele Cosmo (DICOM-V09-06-02)
260            Added G4Ellipsoid to solids enabled    239            Added G4Ellipsoid to solids enabled for parameterisation in
261            DicomNestedPhantomParameterisation.    240            DicomNestedPhantomParameterisation.
262                                                   241 
263 29.07.2013 - Peter Gumplinger (DICOM-V09-06-01    242 29.07.2013 - Peter Gumplinger (DICOM-V09-06-01)
264            Fixed MAC/clang32 compilation warni    243            Fixed MAC/clang32 compilation warnings in DicomRunAction and
265            DiconIntersectVolume classes           244            DiconIntersectVolume classes
266                                                   245 
267 18.07.2013 - Jonathan Madsen                      246 18.07.2013 - Jonathan Madsen
268            Missing documentation update from 1    247            Missing documentation update from 18.12.2012:
269              Improvements and bug-fixes ->        248              Improvements and bug-fixes ->
270              DicomHandler had some bugs when u    249              DicomHandler had some bugs when using DCM files
271                other than examples provided       250                other than examples provided
272              Added DicomPhantomZSliceMerged cl    251              Added DicomPhantomZSliceMerged class to handle
273                inconsistencies in DCM file met    252                inconsistencies in DCM file meta-data
274              DicomPhantomZSliceHeader class is    253              DicomPhantomZSliceHeader class is extended to hold density
275                and material ID data and the pr    254                and material ID data and the printing of data
276                to files instead of DicomHandle    255                to files instead of DicomHandler
277            Removed additions on 16.07.2013 pen    256            Removed additions on 16.07.2013 pending further discussion
278            Reverted DICOM example to 18.12.201    257            Reverted DICOM example to 18.12.2012 update with some very
279              minor tweaks                         258              minor tweaks
280            Kept share folder with additional a    259            Kept share folder with additional anonymous DCM files
281              and additional data files (SixSli    260              and additional data files (SixSlice.dat, AltData.dat). Rename
282              these files with Data.dat to use     261              these files with Data.dat to use
283            Kept CMakeLists.txt to copy over ex    262            Kept CMakeLists.txt to copy over extra data file and anonymous
284              DCM files                            263              DCM files
285                                                   264 
286 16.07.2013 - Jonathan Madsen                      265 16.07.2013 - Jonathan Madsen
287            Many modifications to the DICOM exa    266            Many modifications to the DICOM example.
288            Added more anonymous DICOM files.      267            Added more anonymous DICOM files.
289            Added more script configurations.      268            Added more script configurations.
290            Added DicomCommandLineOptions, Dico    269            Added DicomCommandLineOptions, DicomHelpers, DicomTypeConversion,
291              DicomOption as part of a command     270              DicomOption as part of a command line processing package.
292            Modified CMakeLists.txt to configur    271            Modified CMakeLists.txt to configure extra files.
293            Added capability to use different d    272            Added capability to use different data files for DICOM set,
294              CT2Density file, ColourMap file.     273              CT2Density file, ColourMap file.
295            Added Statistical Analysis and Stat    274            Added Statistical Analysis and Statistical Manager classes
296            Miscellaneous improvements.            275            Miscellaneous improvements.
297            DICOM.cc now has a large list of ru    276            DICOM.cc now has a large list of runtime configuration options
298              via command line.                    277              via command line.
299            Options set at command line are set    278            Options set at command line are set to override environment
300              variables.                           279              variables.
301                                                   280 
302 15.02.2013 - Ivana Hrivnacova (DICOM-V09-06-00    281 15.02.2013 - Ivana Hrivnacova (DICOM-V09-06-00)
303            Applied coding guidelines (virtual     282            Applied coding guidelines (virtual keyword, data members
304            names and initialization)              283            names and initialization)
305                                                   284 
306 07.11.2012 - Gabriele Cosmo (DICOM-V09-05-10)     285 07.11.2012 - Gabriele Cosmo (DICOM-V09-05-10)
307            Fixed compilation warnings for shad    286            Fixed compilation warnings for shadowing of variables and unused
308            return flag from system calls.         287            return flag from system calls.
309                                                   288 
310 18.10.2012 - Ivana Hrivnacova (DICOM-V09-05-09    289 18.10.2012 - Ivana Hrivnacova (DICOM-V09-05-09)
311      Updated CMakeLists.txt: added copying dat    290      Updated CMakeLists.txt: added copying data files to the build
312            area as they are needed to run the     291            area as they are needed to run the tests.
313                                                   292 
314 13.10.2012 - Andrea Dotti (DICOM-V09-05-08)       293 13.10.2012 - Andrea Dotti (DICOM-V09-05-08)
315      Removing previous tag modification (not n    294      Removing previous tag modification (not needed)
316                                                   295 
317 13.10.2012 - Andrea Dotti (DICOM-V09-05-07)       296 13.10.2012 - Andrea Dotti (DICOM-V09-05-07)
318        Adding explicit use of system of units     297        Adding explicit use of system of units
319                                                   298 
320 05.09.2012 - Ivana Hrivnacova (DICOM-V09-05-06    299 05.09.2012 - Ivana Hrivnacova (DICOM-V09-05-06)
321              Fixed compiler warning               300              Fixed compiler warning
322                                                   301 
323 04.09.2012 - Pedro Arce    (DICOM-V09-05-05)      302 04.09.2012 - Pedro Arce    (DICOM-V09-05-05)
324              Remove old renamed files             303              Remove old renamed files
325              Updated CMakeLists.txt (By I.Hriv    304              Updated CMakeLists.txt (By I.Hrivnacova)
326              Adding visualization, copying mac    305              Adding visualization, copying macros, install target and
327              comment lines                        306              comment lines
328                                                   307 
329 17.07.2012 - Ivana Hrivnacova (DICOM-V09-05-04    308 17.07.2012 - Ivana Hrivnacova (DICOM-V09-05-04)
330              Improved README files                309              Improved README files
331                                                   310 
332 06.07.2012 - Pedro Arce    (DICOM-V09-05-03)      311 06.07.2012 - Pedro Arce    (DICOM-V09-05-03)
333              Reviewed examples according to co    312              Reviewed examples according to coding guidelines
334                                                   313 
335 13.06.2012 - Gabriele Cosmo   (DICOM-V09-05-02    314 13.06.2012 - Gabriele Cosmo   (DICOM-V09-05-02)
336              Assign return value for fread() a    315              Assign return value for fread() and fscanf() calls in
337              DicomHandler. Fixes compilation w    316              DicomHandler. Fixes compilation warnings on Ubuntu.
338                                                   317 
339 28.03.2012 - Pedro Arce   (DICOM-V09-05-01)       318 28.03.2012 - Pedro Arce   (DICOM-V09-05-01)
340              Corrections in materials Z/A. Add    319              Corrections in materials Z/A. Addressing problem report #1287.
341                                                   320 
342 13.11.2011 - Pedro Arce   (DICOM-V09-04-03)       321 13.11.2011 - Pedro Arce   (DICOM-V09-04-03)
343              Migration to new G4Exception sche    322              Migration to new G4Exception scheme.
344                                                   323 
345 03.10.2011 - G.Folger   (DICOM-V09-04-02)         324 03.10.2011 - G.Folger   (DICOM-V09-04-02)
346              Fix gcc46 compilation warning in     325              Fix gcc46 compilation warning in DicomHandler.cc
347              and DicomPhantomParameterisationC    326              and DicomPhantomParameterisationColour.cc
348                                                   327 
349 05.06.2011 - Pedro Arce (DICOM-V09-04-01)         328 05.06.2011 - Pedro Arce (DICOM-V09-04-01)
350              Corrected name for sensitive dete    329              Corrected name for sensitive detector to be consistently
351              named as "phantomSD" in DicomRunA    330              named as "phantomSD" in DicomRunAction. Addressing problem
352              report #1210.                        331              report #1210.
353              Corrected axis slicing hint in ne    332              Corrected axis slicing hint in nested-parameterisation.
354                                                   333 
355 23.12.2010 - Stephane Chauvie                     334 23.12.2010 - Stephane Chauvie
356              Corrected 2 bugs in DicomHandler     335              Corrected 2 bugs in DicomHandler
357                                                   336 
358 30.11.2010 - John Allison                         337 30.11.2010 - John Allison
359              dicom.cc: Removed redundant heade    338              dicom.cc: Removed redundant headers:
360              "G4UIterminal.hh" and "G4UItcsh.h    339              "G4UIterminal.hh" and "G4UItcsh.hh".
361                                                   340 
362 30.11.2010 - Ivana Hrivnacova (DICOM-V09-03-09    341 30.11.2010 - Ivana Hrivnacova (DICOM-V09-03-09)
363              Moved inclusion of vis headers as    342              Moved inclusion of vis headers as last in main().
364                                                   343 
365 26.11.2010 - Pedro Arce (DICOM-V09-03-08)         344 26.11.2010 - Pedro Arce (DICOM-V09-03-08)
366        Correction of warnings                     345        Correction of warnings
367                                                   346 
368 24.11.2010 - Pedro Arce (DICOM-V09-03-07)         347 24.11.2010 - Pedro Arce (DICOM-V09-03-07)
369        Introduced partial phantom example         348        Introduced partial phantom example
370        Delete G4PSDoseDeposit_RegNav and use G    349        Delete G4PSDoseDeposit_RegNav and use G4ScoreSplittingProcess instead
371                                                   350 
372 11.11.2010 - Gabriele Cosmo (DICOM-V09-03-06)     351 11.11.2010 - Gabriele Cosmo (DICOM-V09-03-06)
373              Corrected vis.mac macro and set O    352              Corrected vis.mac macro and set OGL as default viewer.
374              Corrected some printouts in code.    353              Corrected some printouts in code...
375                                                   354 
376 09.11.2010 - Gabriele Cosmo (DICOM-V09-03-05)     355 09.11.2010 - Gabriele Cosmo (DICOM-V09-03-05)
377              Fixed compilation warning on virt    356              Fixed compilation warning on virtual methods hiding
378              Fixed compilation warnings in Dic    357              Fixed compilation warnings in DicomPhantomParameterisationColour
379              and DicomHandler.                    358              and DicomHandler.
380                                                   359 
381 02.11.2010 - John Allison (DICOM-V09-03-04)       360 02.11.2010 - John Allison (DICOM-V09-03-04)
382              Introduced G4UIExecutive.            361              Introduced G4UIExecutive.
383                                                   362 
384 06.06.2010 - Joseph Perl (DICOM-V09-03-03)        363 06.06.2010 - Joseph Perl (DICOM-V09-03-03)
385        Remove unused variable in EventAction      364        Remove unused variable in EventAction
386                                                   365 
387 03.06.2010 - Joseph Perl (DICOM-V09-03-02)        366 03.06.2010 - Joseph Perl (DICOM-V09-03-02)
388        Updated vis usage                          367        Updated vis usage
389                                                   368 
390 19.11.2009 - StÈphane Chauvie (DICOM-V09-03-0    369 19.11.2009 - StÈphane Chauvie (DICOM-V09-03-00)
391 01.06.2010 - Stephane Chauvie - Andrea Armando    370 01.06.2010 - Stephane Chauvie - Andrea Armando
392        Added function to read nested items (de    371        Added function to read nested items (defined and undefined)
393        Removed dependencies on CONQUEST           372        Removed dependencies on CONQUEST
394        DICOM handler could now read whichever     373        DICOM handler could now read whichever DICOM file
395              (PT,CT,DR,CR,US,MR... )              374              (PT,CT,DR,CR,US,MR... )
396                                                   375 
397 19.11.2009 - Stephanee Chauvie (DICOM-V09-02-0    376 19.11.2009 - Stephanee Chauvie (DICOM-V09-02-03)
398        Changed DICOM Handler to read CT files     377        Changed DICOM Handler to read CT files coming from CONQUEST
399              DICOM server                         378              DICOM server
400                                                   379 
401 05.02.2009 - Pedro Arce (DICOM-V09-02-01)         380 05.02.2009 - Pedro Arce (DICOM-V09-02-01)
402              Added report on dose per voxel.      381              Added report on dose per voxel.
403              Added warning for erroneous inclu    382              Added warning for erroneous inclusion of development code in
404              release 9.2 (to be removed when f    383              release 9.2 (to be removed when fix will be included in patch).
405                                                   384 
406 27.01.2009 - Gabriele Cosmo (DICOM-V09-02-00)     385 27.01.2009 - Gabriele Cosmo (DICOM-V09-02-00)
407              Use new class G4RegularNavigation    386              Use new class G4RegularNavigationHistory for counting of step
408              lengths in voxels of the regular     387              lengths in voxels of the regular structure.
409                                                   388 
410 27.11.2008 - Pedro Arce (DICOM-V09-01-02)         389 27.11.2008 - Pedro Arce (DICOM-V09-01-02)
411              Included G4PSDoseDeposit_RegNav t    390              Included G4PSDoseDeposit_RegNav to distribute dose along voxels,
412        including msc and energy loss correctio    391        including msc and energy loss corrections, for the case of
413        skipping voxel with equal materials whe    392        skipping voxel with equal materials when using regular
414        navigation                                 393        navigation
415                                                   394 
416 21.07.2008 - Pedro Arce (DICOM-V09-01-01)         395 21.07.2008 - Pedro Arce (DICOM-V09-01-01)
417              Bug fix in DicomNestedPhantomPara    396              Bug fix in DicomNestedPhantomParameterisation in calculating the
418              'copyNo', so that material assign    397              'copyNo', so that material assignment was wrong
419              Set default cut to 1 mm (with pre    398              Set default cut to 1 mm (with previous 1.E-3 mm too much time is
420              spent on physics and no improveme    399              spent on physics and no improvement is seen with different
421              navigation options).                 400              navigation options).
422              Corrected direction and position     401              Corrected direction and position of primary particles so that
423              they traverse the DICOM voxels.      402              they traverse the DICOM voxels.
424                                                   403 
425 22.01.2008 - Pedro Arce (DICOM-V09-01-00)         404 22.01.2008 - Pedro Arce (DICOM-V09-01-00)
426              Do not use 'rindex' in DicomHandl    405              Do not use 'rindex' in DicomHandler class to avoid problems
427              on Windows.                          406              on Windows.
428                                                   407 
429 06.12.2007 - Pedro Arce                           408 06.12.2007 - Pedro Arce
430              Added voxel colouring by material    409              Added voxel colouring by material. Added possibility to use nested parameterisation
431                                                   410 
432 05.12.2007 - Pedro Arce                           411 05.12.2007 - Pedro Arce
433              Deep review on the input files an    412              Deep review on the input files and the way how the geometry is built.
434              Use of G4PhantomParameterisation     413              Use of G4PhantomParameterisation and G4RegularNavigation.
435                                                   414 
436 06.12.2005 - Gabriele Cosmo                       415 06.12.2005 - Gabriele Cosmo
437              Trivial changes for support of CL    416              Trivial changes for support of CLHEP-2.0.X series.
438                                                   417 
439 29.11.2005 - Susanna Guatelli (DICOM-V07-01-00    418 29.11.2005 - Susanna Guatelli (DICOM-V07-01-00)
440              Documentation update                 419              Documentation update
441                                                   420 
442 12.06.2005 - Stephane Chauvie (DICOM-V07-00-01    421 12.06.2005 - Stephane Chauvie (DICOM-V07-00-01)
443              Added improvement by Akinori Kimu    422              Added improvement by Akinori Kimura.
444                                                   423 
445 03.05.2005 - John Allison                         424 03.05.2005 - John Allison
446              Replaced vis manager with G4VisEx    425              Replaced vis manager with G4VisExecutive.
447                                                   426 
448 10.12.2004 - Maria Grazia Pia (DICOM-V06-02-02    427 10.12.2004 - Maria Grazia Pia (DICOM-V06-02-02)
449              Update README to announce further    428              Update README to announce further improvements and fixes
450              by Akinori Kimura.                   429              by Akinori Kimura.
451                                                   430 
452 3.12.2004 - Gabriele Cosmo (DICOM-V06-02-01)      431 3.12.2004 - Gabriele Cosmo (DICOM-V06-02-01)
453             Implemented migration to <cmath>.     432             Implemented migration to <cmath>.
454                                                   433 
455 13.5.2004 - Susanna Guatelli                      434 13.5.2004 - Susanna Guatelli
456             updated compiler: gcc3.2.3            435             updated compiler: gcc3.2.3
457                                                   436 
458 11.3.2003 - Susanna Guatelli                      437 11.3.2003 - Susanna Guatelli
459             README changed                        438             README changed
460                                                   439 
461 6.2003 - Susanna Guatelli                         440 6.2003 - Susanna Guatelli
462          First public release of the example      441          First public release of the example