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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // The Geant4-DNA web site is available at htt 30 // The Geant4-DNA web site is available at http://geant4-dna.org
31 // 31 //
32 // If you use this example, please cite the fo 32 // If you use this example, please cite the following publication:
33 // Rad. Prot. Dos. 133 (2009) 2-11 33 // Rad. Prot. Dos. 133 (2009) 2-11
34 // 34 //
35 #include "RunAction.hh" 35 #include "RunAction.hh"
36 36
37 #include "G4UImanager.hh" 37 #include "G4UImanager.hh"
38 #include "G4AnalysisManager.hh" 38 #include "G4AnalysisManager.hh"
39 #include "Randomize.hh" 39 #include "Randomize.hh"
40 40
41 RunAction::RunAction(const DetectorConstructio 41 RunAction::RunAction(const DetectorConstruction* det)
42 :fDetector(det) 42 :fDetector(det)
43 { 43 {
44 fSaveRndm = 0; 44 fSaveRndm = 0;
45 fDose3DDose = nullptr; 45 fDose3DDose = nullptr;
46 fMapVoxels = nullptr; 46 fMapVoxels = nullptr;
47 } 47 }
48 48
49 RunAction::~RunAction() 49 RunAction::~RunAction()
50 { 50 {
51 if (fDose3DDose) delete[] fDose3DDose; 51 if (fDose3DDose) delete[] fDose3DDose;
52 if (fMapVoxels) delete[] fMapVoxels; 52 if (fMapVoxels) delete[] fMapVoxels;
53 } 53 }
54 54
55 void RunAction::BeginOfRunAction(const G4Run*) 55 void RunAction::BeginOfRunAction(const G4Run*)
56 { 56 {
57 // Read phantom - Singleton 57 // Read phantom - Singleton
58 CellParameterisation* fMyCellParameterisatio 58 CellParameterisation* fMyCellParameterisation = CellParameterisation::Instance();
59 59
60 // Histograms 60 // Histograms
61 // Get/create analysis manager 61 // Get/create analysis manager
62 G4cout << "##### Create analysis manager " < 62 G4cout << "##### Create analysis manager " << " " << this << G4endl;
63 63
64 G4AnalysisManager* man = G4AnalysisManager:: 64 G4AnalysisManager* man = G4AnalysisManager::Instance();
65 man->SetDefaultFileType("root"); 65 man->SetDefaultFileType("root");
66 66
67 G4cout << "Using " << man->GetType() << " an 67 G4cout << "Using " << man->GetType() << " analysis manager" << G4endl;
68 68
69 // Open an output file 69 // Open an output file
70 man->OpenFile("microbeam"); 70 man->OpenFile("microbeam");
71 man->SetFirstNtupleId(1); 71 man->SetFirstNtupleId(1);
72 72
73 //Declare ntuples 73 //Declare ntuples
74 // 74 //
75 // Create 1st ntuple (id = 1) 75 // Create 1st ntuple (id = 1)
76 // 76 //
77 man->CreateNtuple("ntuple0", "Stopping power 77 man->CreateNtuple("ntuple0", "Stopping power");
78 man->CreateNtupleDColumn("e"); 78 man->CreateNtupleDColumn("e");
79 man->CreateNtupleDColumn("sp"); 79 man->CreateNtupleDColumn("sp");
80 man->FinishNtuple(); 80 man->FinishNtuple();
81 //G4cout << "Ntuple-1 created" << G4endl; 81 //G4cout << "Ntuple-1 created" << G4endl;
82 82
83 // 83 //
84 // Create 2nd ntuple (id = 2) 84 // Create 2nd ntuple (id = 2)
85 // 85 //
86 man->CreateNtuple("ntuple1", "Beam position" 86 man->CreateNtuple("ntuple1", "Beam position");
87 man->CreateNtupleDColumn("x"); 87 man->CreateNtupleDColumn("x");
88 man->CreateNtupleDColumn("y"); 88 man->CreateNtupleDColumn("y");
89 man->FinishNtuple(); 89 man->FinishNtuple();
90 //G4cout << "Ntuple-2 created" << G4endl; 90 //G4cout << "Ntuple-2 created" << G4endl;
91 91
92 // 92 //
93 // Create 3rd ntuple (id = 3) 93 // Create 3rd ntuple (id = 3)
94 // 94 //
95 man->CreateNtuple("ntuple2", "Range"); 95 man->CreateNtuple("ntuple2", "Range");
96 man->CreateNtupleDColumn("x"); 96 man->CreateNtupleDColumn("x");
97 man->CreateNtupleDColumn("y"); 97 man->CreateNtupleDColumn("y");
98 man->CreateNtupleDColumn("z"); 98 man->CreateNtupleDColumn("z");
99 man->FinishNtuple(); 99 man->FinishNtuple();
100 //G4cout << "Ntuple-3 created" << G4endl; 100 //G4cout << "Ntuple-3 created" << G4endl;
101 101
102 // 102 //
103 // Create 4th ntuple (id = 4) 103 // Create 4th ntuple (id = 4)
104 // 104 //
105 man->CreateNtuple("ntuple3", "Doses"); 105 man->CreateNtuple("ntuple3", "Doses");
106 man->CreateNtupleDColumn("doseN"); 106 man->CreateNtupleDColumn("doseN");
107 man->CreateNtupleDColumn("doseC"); 107 man->CreateNtupleDColumn("doseC");
108 man->FinishNtuple(); 108 man->FinishNtuple();
109 //G4cout << "Ntuple-4 created" << G4endl; 109 //G4cout << "Ntuple-4 created" << G4endl;
110 110
111 // 111 //
112 // Create 5th ntuple (id = 5) 112 // Create 5th ntuple (id = 5)
113 // 113 //
114 man->CreateNtuple("ntuple4", "3D"); 114 man->CreateNtuple("ntuple4", "3D");
115 man->CreateNtupleDColumn("x"); 115 man->CreateNtupleDColumn("x");
116 man->CreateNtupleDColumn("y"); 116 man->CreateNtupleDColumn("y");
117 man->CreateNtupleDColumn("z"); 117 man->CreateNtupleDColumn("z");
118 man->CreateNtupleDColumn("doseV"); 118 man->CreateNtupleDColumn("doseV");
119 man->FinishNtuple(); 119 man->FinishNtuple();
120 //G4cout << "Ntuple-3 created" << G4endl; 120 //G4cout << "Ntuple-3 created" << G4endl;
121 121
122 G4cout << "All Ntuples have been created " < 122 G4cout << "All Ntuples have been created " << G4endl;
123 123
124 // save Rndm status 124 // save Rndm status
125 if (fSaveRndm > 0) 125 if (fSaveRndm > 0)
126 { 126 {
127 CLHEP::HepRandom::showEngineStatus(); 127 CLHEP::HepRandom::showEngineStatus();
128 CLHEP::HepRandom::saveEngineStatus("beginO 128 CLHEP::HepRandom::saveEngineStatus("beginOfRun.rndm");
129 } 129 }
130 130
131 fNumEvent = 0; 131 fNumEvent = 0;
132 fNbOfHitsGas = 0; 132 fNbOfHitsGas = 0;
133 133
134 // ABSORBED DOSES INITIALIZATION 134 // ABSORBED DOSES INITIALIZATION
135 fDoseN = 0; 135 fDoseN = 0;
136 fDoseC = 0; 136 fDoseC = 0;
137 137
138 fMassCytoplasm = fDetector->GetMassCytoplasm 138 fMassCytoplasm = fDetector->GetMassCytoplasm();
139 fMassNucleus = fDetector->GetMassNucleus() 139 fMassNucleus = fDetector->GetMassNucleus();
140 fNbOfPixels = fDetector->GetNbOfPixelsInPhan 140 fNbOfPixels = fDetector->GetNbOfPixelsInPhantom();
141 141
142 fMapVoxels = new G4ThreeVector[fNbOfPixels]; 142 fMapVoxels = new G4ThreeVector[fNbOfPixels];
143 fDose3DDose = new G4double[fNbOfPixels]; 143 fDose3DDose = new G4double[fNbOfPixels];
144 144
145 for (G4int i=0; i<fNbOfPixels; i++) 145 for (G4int i=0; i<fNbOfPixels; i++)
146 { 146 {
147 fMapVoxels [i]=fMyCellParameterisation->Ge 147 fMapVoxels [i]=fMyCellParameterisation->GetVoxelThreeVector(i);
148 fDose3DDose[i]=0; 148 fDose3DDose[i]=0;
149 } 149 }
150 } 150 }
151 151
152 void RunAction::EndOfRunAction(const G4Run* /* 152 void RunAction::EndOfRunAction(const G4Run* /*aRun*/)
153 { 153 {
154 G4AnalysisManager* man = G4AnalysisManager:: 154 G4AnalysisManager* man = G4AnalysisManager::Instance();
155 155
156 // save Rndm status 156 // save Rndm status
157 if (fSaveRndm == 1) 157 if (fSaveRndm == 1)
158 { 158 {
159 CLHEP::HepRandom::showEngineStatus(); 159 CLHEP::HepRandom::showEngineStatus();
160 CLHEP::HepRandom::saveEngineStatus("endOfR 160 CLHEP::HepRandom::saveEngineStatus("endOfRun.rndm");
161 } 161 }
162 162
163 for (G4int i=0; i<fNbOfPixels; i++) 163 for (G4int i=0; i<fNbOfPixels; i++)
164 { 164 {
165 if (fDose3DDose[i]>0) 165 if (fDose3DDose[i]>0)
166 { 166 {
167 G4ThreeVector v; 167 G4ThreeVector v;
168 v = fMapVoxels[i]; 168 v = fMapVoxels[i];
169 man->FillNtupleDColumn(5,0,v.x()); 169 man->FillNtupleDColumn(5,0,v.x());
170 man->FillNtupleDColumn(5,1,v.y()); 170 man->FillNtupleDColumn(5,1,v.y());
171 man->FillNtupleDColumn(5,2,v.z()); 171 man->FillNtupleDColumn(5,2,v.z());
172 man->FillNtupleDColumn(5,3,fDose3DDose[i 172 man->FillNtupleDColumn(5,3,fDose3DDose[i]);
173 man->AddNtupleRow(5); 173 man->AddNtupleRow(5);
174 } 174 }
175 } 175 }
176 176
177 G4cout << "-> Total number of particles dete 177 G4cout << "-> Total number of particles detected by the gas detector : " << GetNbOfHitsGas() << G4endl;
178 G4cout << G4endl; 178 G4cout << G4endl;
179 179
180 //save histograms 180 //save histograms
181 man->Write(); 181 man->Write();
182 man->CloseFile(); 182 man->CloseFile();
183 183
184 // Complete clean-up 184 // Complete clean-up
185 man->Clear(); 185 man->Clear();
186 } 186 }
187 187