| Geant4 Cross Reference |
1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
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10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // The Geant4-DNA web site is available at htt 30 // The Geant4-DNA web site is available at http://geant4-dna.org
31 // 31 //
32 // If you use this example, please cite the fo 32 // If you use this example, please cite the following publication:
33 // Rad. Prot. Dos. 133 (2009) 2-11 33 // Rad. Prot. Dos. 133 (2009) 2-11
34 // <<
35 #include "RunAction.hh" <<
36 34
37 #include "G4UImanager.hh" 35 #include "G4UImanager.hh"
38 #include "G4AnalysisManager.hh" <<
39 #include "Randomize.hh" 36 #include "Randomize.hh"
40 37
41 RunAction::RunAction(const DetectorConstructio << 38 #include "RunAction.hh"
>> 39 #include "Analysis.hh"
>> 40
>> 41 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
>> 42
>> 43 RunAction::RunAction(DetectorConstruction* det)
42 :fDetector(det) 44 :fDetector(det)
43 { 45 {
44 fSaveRndm = 0; 46 fSaveRndm = 0;
45 fDose3DDose = nullptr; <<
46 fMapVoxels = nullptr; <<
47 } 47 }
48 48
>> 49 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
>> 50
49 RunAction::~RunAction() 51 RunAction::~RunAction()
50 { 52 {
51 if (fDose3DDose) delete[] fDose3DDose; << 53 delete[] fDose3DDose;
52 if (fMapVoxels) delete[] fMapVoxels; << 54 delete[] fMapVoxels;
53 } 55 }
54 56
>> 57 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
>> 58
55 void RunAction::BeginOfRunAction(const G4Run*) 59 void RunAction::BeginOfRunAction(const G4Run*)
56 { 60 {
57 // Read phantom - Singleton << 61
58 CellParameterisation* fMyCellParameterisatio <<
59 <<
60 // Histograms 62 // Histograms
61 // Get/create analysis manager 63 // Get/create analysis manager
62 G4cout << "##### Create analysis manager " < 64 G4cout << "##### Create analysis manager " << " " << this << G4endl;
63 65
64 G4AnalysisManager* man = G4AnalysisManager:: 66 G4AnalysisManager* man = G4AnalysisManager::Instance();
65 man->SetDefaultFileType("root"); <<
66 67
67 G4cout << "Using " << man->GetType() << " an 68 G4cout << "Using " << man->GetType() << " analysis manager" << G4endl;
68 69
69 // Open an output file 70 // Open an output file
70 man->OpenFile("microbeam"); 71 man->OpenFile("microbeam");
71 man->SetFirstNtupleId(1); 72 man->SetFirstNtupleId(1);
72 73
73 //Declare ntuples 74 //Declare ntuples
74 // 75 //
75 // Create 1st ntuple (id = 1) 76 // Create 1st ntuple (id = 1)
76 // 77 //
77 man->CreateNtuple("ntuple0", "Stopping power 78 man->CreateNtuple("ntuple0", "Stopping power");
78 man->CreateNtupleDColumn("e"); 79 man->CreateNtupleDColumn("e");
79 man->CreateNtupleDColumn("sp"); 80 man->CreateNtupleDColumn("sp");
80 man->FinishNtuple(); 81 man->FinishNtuple();
81 //G4cout << "Ntuple-1 created" << G4endl; 82 //G4cout << "Ntuple-1 created" << G4endl;
82 83
83 // 84 //
84 // Create 2nd ntuple (id = 2) 85 // Create 2nd ntuple (id = 2)
85 // 86 //
86 man->CreateNtuple("ntuple1", "Beam position" 87 man->CreateNtuple("ntuple1", "Beam position");
87 man->CreateNtupleDColumn("x"); 88 man->CreateNtupleDColumn("x");
88 man->CreateNtupleDColumn("y"); 89 man->CreateNtupleDColumn("y");
89 man->FinishNtuple(); 90 man->FinishNtuple();
90 //G4cout << "Ntuple-2 created" << G4endl; 91 //G4cout << "Ntuple-2 created" << G4endl;
91 92
92 // 93 //
93 // Create 3rd ntuple (id = 3) 94 // Create 3rd ntuple (id = 3)
94 // 95 //
95 man->CreateNtuple("ntuple2", "Range"); 96 man->CreateNtuple("ntuple2", "Range");
96 man->CreateNtupleDColumn("x"); 97 man->CreateNtupleDColumn("x");
97 man->CreateNtupleDColumn("y"); 98 man->CreateNtupleDColumn("y");
98 man->CreateNtupleDColumn("z"); 99 man->CreateNtupleDColumn("z");
99 man->FinishNtuple(); 100 man->FinishNtuple();
100 //G4cout << "Ntuple-3 created" << G4endl; 101 //G4cout << "Ntuple-3 created" << G4endl;
101 102
102 // 103 //
103 // Create 4th ntuple (id = 4) 104 // Create 4th ntuple (id = 4)
104 // 105 //
105 man->CreateNtuple("ntuple3", "Doses"); 106 man->CreateNtuple("ntuple3", "Doses");
106 man->CreateNtupleDColumn("doseN"); 107 man->CreateNtupleDColumn("doseN");
107 man->CreateNtupleDColumn("doseC"); 108 man->CreateNtupleDColumn("doseC");
108 man->FinishNtuple(); 109 man->FinishNtuple();
109 //G4cout << "Ntuple-4 created" << G4endl; 110 //G4cout << "Ntuple-4 created" << G4endl;
110 111
111 // 112 //
112 // Create 5th ntuple (id = 5) 113 // Create 5th ntuple (id = 5)
113 // 114 //
114 man->CreateNtuple("ntuple4", "3D"); 115 man->CreateNtuple("ntuple4", "3D");
115 man->CreateNtupleDColumn("x"); 116 man->CreateNtupleDColumn("x");
116 man->CreateNtupleDColumn("y"); 117 man->CreateNtupleDColumn("y");
117 man->CreateNtupleDColumn("z"); 118 man->CreateNtupleDColumn("z");
118 man->CreateNtupleDColumn("doseV"); 119 man->CreateNtupleDColumn("doseV");
119 man->FinishNtuple(); 120 man->FinishNtuple();
120 //G4cout << "Ntuple-3 created" << G4endl; 121 //G4cout << "Ntuple-3 created" << G4endl;
121 122
122 G4cout << "All Ntuples have been created " < 123 G4cout << "All Ntuples have been created " << G4endl;
123 124
124 // save Rndm status 125 // save Rndm status
125 if (fSaveRndm > 0) 126 if (fSaveRndm > 0)
126 { << 127 {
127 CLHEP::HepRandom::showEngineStatus(); << 128 CLHEP::HepRandom::showEngineStatus();
128 CLHEP::HepRandom::saveEngineStatus("beginO << 129 CLHEP::HepRandom::saveEngineStatus("beginOfRun.rndm");
129 } << 130 }
130 131
131 fNumEvent = 0; 132 fNumEvent = 0;
132 fNbOfHitsGas = 0; 133 fNbOfHitsGas = 0;
133 134
134 // ABSORBED DOSES INITIALIZATION 135 // ABSORBED DOSES INITIALIZATION
135 fDoseN = 0; 136 fDoseN = 0;
136 fDoseC = 0; 137 fDoseC = 0;
137 138
138 fMassCytoplasm = fDetector->GetMassCytoplasm 139 fMassCytoplasm = fDetector->GetMassCytoplasm();
139 fMassNucleus = fDetector->GetMassNucleus() 140 fMassNucleus = fDetector->GetMassNucleus();
140 fNbOfPixels = fDetector->GetNbOfPixelsInPhan 141 fNbOfPixels = fDetector->GetNbOfPixelsInPhantom();
141 142
142 fMapVoxels = new G4ThreeVector[fNbOfPixels]; 143 fMapVoxels = new G4ThreeVector[fNbOfPixels];
143 fDose3DDose = new G4double[fNbOfPixels]; << 144 fDose3DDose = new G4float[fNbOfPixels];
144 145
145 for (G4int i=0; i<fNbOfPixels; i++) 146 for (G4int i=0; i<fNbOfPixels; i++)
146 { 147 {
147 fMapVoxels [i]=fMyCellParameterisation->Ge << 148 fMapVoxels [i]=fMyPhantomConfiguration.GetVoxelThreeVector(i);
148 fDose3DDose[i]=0; << 149 fDose3DDose[i]=0;
>> 150 G4ThreeVector v=fMapVoxels[i];
149 } 151 }
>> 152
150 } 153 }
151 154
>> 155 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
>> 156
152 void RunAction::EndOfRunAction(const G4Run* /* 157 void RunAction::EndOfRunAction(const G4Run* /*aRun*/)
153 { 158 {
154 G4AnalysisManager* man = G4AnalysisManager:: 159 G4AnalysisManager* man = G4AnalysisManager::Instance();
155 160
156 // save Rndm status 161 // save Rndm status
157 if (fSaveRndm == 1) 162 if (fSaveRndm == 1)
158 { 163 {
159 CLHEP::HepRandom::showEngineStatus(); 164 CLHEP::HepRandom::showEngineStatus();
160 CLHEP::HepRandom::saveEngineStatus("endOfR 165 CLHEP::HepRandom::saveEngineStatus("endOfRun.rndm");
161 } 166 }
162 167
163 for (G4int i=0; i<fNbOfPixels; i++) 168 for (G4int i=0; i<fNbOfPixels; i++)
164 { 169 {
165 if (fDose3DDose[i]>0) << 170 G4ThreeVector v;
166 { << 171 v = fMapVoxels[i];
167 G4ThreeVector v; << 172 if ( (GetNumEvent()+1) !=0)
168 v = fMapVoxels[i]; << 173 {
169 man->FillNtupleDColumn(5,0,v.x()); << 174 //Fill ntuple #5
170 man->FillNtupleDColumn(5,1,v.y()); << 175 man->FillNtupleDColumn(5,0,v.x());
171 man->FillNtupleDColumn(5,2,v.z()); << 176 man->FillNtupleDColumn(5,1,v.y());
172 man->FillNtupleDColumn(5,3,fDose3DDose[i << 177 man->FillNtupleDColumn(5,2,v.z());
173 man->AddNtupleRow(5); << 178 man->FillNtupleDColumn(5,3,fDose3DDose[i]/(GetNumEvent()+1));
174 } << 179 man->AddNtupleRow(5);
>> 180 }
175 } 181 }
176 182
177 G4cout << "-> Total number of particles dete 183 G4cout << "-> Total number of particles detected by the gas detector : " << GetNbOfHitsGas() << G4endl;
178 G4cout << G4endl; 184 G4cout << G4endl;
179 185
180 //save histograms 186 //save histograms
181 man->Write(); 187 man->Write();
182 man->CloseFile(); 188 man->CloseFile();
183 << 189
184 // Complete clean-up 190 // Complete clean-up
185 man->Clear(); << 191 delete G4AnalysisManager::Instance();
>> 192
186 } 193 }
187 194