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Geant4/examples/advanced/microbeam/plot.C

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Diff markup

Differences between /examples/advanced/microbeam/plot.C (Version 11.3.0) and /examples/advanced/microbeam/plot.C (Version 10.0.p1)


  1 // -------------------------------------------      1 // -------------------------------------------------------------------
                                                   >>   2 // $Id: plot.C 69157 2013-04-19 14:05:11Z gcosmo $
  2 // -------------------------------------------      3 // -------------------------------------------------------------------
  3 //                                                  4 //
  4 // *******************************************      5 // *********************************************************************
  5 // To execute this macro under ROOT,                6 // To execute this macro under ROOT, 
  6 //   1 - launch ROOT (usually type 'root' at y      7 //   1 - launch ROOT (usually type 'root' at your machine's prompt)
  7 //   2 - type '.X plot.C' at the ROOT session       8 //   2 - type '.X plot.C' at the ROOT session prompt
  8 // This macro needs five files : dose.txt, sto      9 // This macro needs five files : dose.txt, stoppingPower.txt, range.txt,
  9 // 3DDose.txt and beamPosition.txt                 10 // 3DDose.txt and beamPosition.txt
 10 // written by S. Incerti and O. Boissonnade, 1     11 // written by S. Incerti and O. Boissonnade, 10/04/2006
 11 // *******************************************     12 // *********************************************************************
 12 {                                                  13 {
 13                                                    14 
 14 gROOT->Reset();                                    15 gROOT->Reset();
 15                                                    16 
 16 //****************                                 17 //****************
 17 // DOSE IN NUCLEUS                                 18 // DOSE IN NUCLEUS
 18 //****************                                 19 //****************
 19                                                    20 
 20 gStyle->SetOptStat(0000);                          21 gStyle->SetOptStat(0000);
 21 gStyle->SetOptFit();                               22 gStyle->SetOptFit();
 22 gStyle->SetPalette(1);                             23 gStyle->SetPalette(1);
 23 gROOT->SetStyle("Plain");                          24 gROOT->SetStyle("Plain");
 24 Double_t scale;                                    25 Double_t scale;
 25                                                    26 
 26                                                    27 
 27 c1 = new TCanvas ("c1","",20,20,1200,900);         28 c1 = new TCanvas ("c1","",20,20,1200,900);
 28 c1->Divide(4,3);                               <<  29 c1.Divide(4,3);
 29                                                    30 
 30 //*********************                            31 //*********************
 31 // INTENSITY HISTOGRAMS                            32 // INTENSITY HISTOGRAMS 
 32 //*********************                            33 //*********************
                                                   >>  34 jump:
 33                                                    35 
 34 FILE * fp = fopen("phantom.dat","r");              36 FILE * fp = fopen("phantom.dat","r");
 35 Float_t xVox, yVox, zVox, tmp, den, dose;          37 Float_t xVox, yVox, zVox, tmp, den, dose;
 36                                                    38 
 37 Float_t X,Y,Z;                                     39 Float_t X,Y,Z;
 38 Float_t vox = 0,  mat = 0;                         40 Float_t vox = 0,  mat = 0;
 39 Float_t voxelSizeX, voxelSizeY, voxelSizeZ;        41 Float_t voxelSizeX, voxelSizeY, voxelSizeZ;
 40                                                    42 
 41 TH1F *h1  = new TH1F("h1","Nucleus marker inte     43 TH1F *h1  = new TH1F("h1","Nucleus marker intensity",100,1,300);
 42 TH1F *h11 = new TH1F("h11 ","",100,1,300);         44 TH1F *h11 = new TH1F("h11 ","",100,1,300);
 43                                                    45 
 44 TH1F *h2  = new TH1F("h2","Cytoplasm marker in     46 TH1F *h2  = new TH1F("h2","Cytoplasm marker intensity",100,1,300);
 45 TH1F *h20 = new TH1F("h20 ","",100,1,300);         47 TH1F *h20 = new TH1F("h20 ","",100,1,300);
 46                                                    48 
 47 TNtuple *ntupleYXN = new TNtuple("NUCLEUS","nt     49 TNtuple *ntupleYXN = new TNtuple("NUCLEUS","ntuple","Y:X:vox");
 48 TNtuple *ntupleZX = new TNtuple("CYTOPLASM","n     50 TNtuple *ntupleZX = new TNtuple("CYTOPLASM","ntuple","Z:X:vox");
 49 TNtuple *ntupleYX = new TNtuple("CYTOPLASM","n     51 TNtuple *ntupleYX = new TNtuple("CYTOPLASM","ntuple","Y:X:vox");
 50                                                    52 
 51 Int_t nlines=0;                                <<  53 nlines=0;
 52 Int_t ncols=0;                                 <<  54 ncols=0;
 53                                                    55 
 54 while (1)                                          56 while (1) 
 55    {                                               57    {
 56       if ( nlines == 0 ) ncols = fscanf(fp,"%f     58       if ( nlines == 0 ) ncols = fscanf(fp,"%f %f %f",&tmp,&tmp,&tmp);
 57       if ( nlines == 1 ) ncols = fscanf(fp,"%f     59       if ( nlines == 1 ) ncols = fscanf(fp,"%f %f %f",&voxelSizeX,&voxelSizeY,&voxelSizeZ);
 58       if ( nlines == 2 ) ncols = fscanf(fp,"%f     60       if ( nlines == 2 ) ncols = fscanf(fp,"%f %f %f",&tmp,&tmp,&tmp);
 59       if ( nlines >= 3 ) ncols = fscanf(fp,"%f     61       if ( nlines >= 3 ) ncols = fscanf(fp,"%f %f %f %f %f %f", &X, &Y, &Z, &mat, &den, &vox);
 60       if (ncols < 0) break;                        62       if (ncols < 0) break;
 61                                                    63 
 62       X= X*voxelSizeX;                             64       X= X*voxelSizeX;
 63       Y= Y*voxelSizeY;                             65       Y= Y*voxelSizeY;
 64       Z= Z*voxelSizeZ;                             66       Z= Z*voxelSizeZ;
 65                                                    67   
 66       if ( mat == 2 )  // noyau                    68       if ( mat == 2 )  // noyau
 67          {                                         69          {
 68     if (den==1) h1->Fill( vox );                   70     if (den==1) h1->Fill( vox );
 69     if (den==2) h11->Fill( vox );                  71     if (den==2) h11->Fill( vox );
 70     ntupleYXN->Fill(Y,X,vox);                      72     ntupleYXN->Fill(Y,X,vox);
 71    }                                               73    }
 72       if ( mat == 1 ) // cytoplasm                 74       if ( mat == 1 ) // cytoplasm
 73          {                                         75          {
 74     if (den==1) h2->Fill( vox );                   76     if (den==1) h2->Fill( vox );
 75     if (den==2) h20->Fill( vox );                  77     if (den==2) h20->Fill( vox );
 76     ntupleZX->Fill(Z,X,vox);                       78     ntupleZX->Fill(Z,X,vox);
 77     ntupleYX->Fill(Y,X,vox);                       79     ntupleYX->Fill(Y,X,vox);
 78    }                                               80    }
 79       nlines++;                                    81       nlines++;
 80                                                    82       
 81    }                                               83    }
 82 fclose(fp);                                        84 fclose(fp);
 83                                                    85 
 84 // HISTO NUCLEUS                                   86 // HISTO NUCLEUS
 85                                                    87 
 86 c1->cd(1);                                     <<  88 c1.cd(1);
 87   h1->Draw();                                      89   h1->Draw();
 88   h1->GetXaxis()->SetLabelSize(0.025);             90   h1->GetXaxis()->SetLabelSize(0.025);
 89   h1->GetYaxis()->SetLabelSize(0.025);             91   h1->GetYaxis()->SetLabelSize(0.025);
 90   h1->GetXaxis()->SetTitleSize(0.035);             92   h1->GetXaxis()->SetTitleSize(0.035);
 91   h1->GetYaxis()->SetTitleSize(0.035);             93   h1->GetYaxis()->SetTitleSize(0.035);
 92   h1->GetXaxis()->SetTitleOffset(1.4);             94   h1->GetXaxis()->SetTitleOffset(1.4);
 93   h1->GetYaxis()->SetTitleOffset(1.4);             95   h1->GetYaxis()->SetTitleOffset(1.4);
 94   h1->GetXaxis()->SetTitle("Voxel intensity (0     96   h1->GetXaxis()->SetTitle("Voxel intensity (0-255)");
 95   h1->GetYaxis()->SetTitle("Number of events")     97   h1->GetYaxis()->SetTitle("Number of events");  
 96   h1->SetLineColor(3);                             98   h1->SetLineColor(3);
 97   h1->SetFillColor(3);   // green                  99   h1->SetFillColor(3);   // green
 98                                                   100 
 99   h11->SetLineColor(8);                           101   h11->SetLineColor(8);
100   h11->SetFillColor(8);  // dark green            102   h11->SetFillColor(8);  // dark green
101   h11->Draw("same");                              103   h11->Draw("same");
102                                                   104 
103 // HISTO CYTOPLASM                                105 // HISTO CYTOPLASM
104                                                   106 
105 c1->cd(5);                                     << 107 c1.cd(5);
106   h2->Draw();                                     108   h2->Draw();
107   h2->GetXaxis()->SetLabelSize(0.025);            109   h2->GetXaxis()->SetLabelSize(0.025);
108   h2->GetYaxis()->SetLabelSize(0.025);            110   h2->GetYaxis()->SetLabelSize(0.025);
109   h2->GetXaxis()->SetTitleSize(0.035);            111   h2->GetXaxis()->SetTitleSize(0.035);
110   h2->GetYaxis()->SetTitleSize(0.035);            112   h2->GetYaxis()->SetTitleSize(0.035);
111   h2->GetXaxis()->SetTitleOffset(1.4);            113   h2->GetXaxis()->SetTitleOffset(1.4);
112   h2->GetYaxis()->SetTitleOffset(1.4);            114   h2->GetYaxis()->SetTitleOffset(1.4);
113   h2->GetXaxis()->SetTitle("Voxel intensity (0    115   h2->GetXaxis()->SetTitle("Voxel intensity (0-255)");
114   h2->GetYaxis()->SetTitle("Number of events")    116   h2->GetYaxis()->SetTitle("Number of events");  
115   h2->SetLineColor(2);                            117   h2->SetLineColor(2);
116   h2->SetFillColor(2);   // red                   118   h2->SetFillColor(2);   // red
117                                                   119   
118   h20->SetLineColor(5);                           120   h20->SetLineColor(5);
119   h20->SetFillColor(5);  // yellow (nucleoli)     121   h20->SetFillColor(5);  // yellow (nucleoli)
120   h20->Draw("same");                              122   h20->Draw("same");
121                                                   123 
122 //*************************                       124 //*************************
123 // CUMULATED CELL INTENSITY                       125 // CUMULATED CELL INTENSITY 
124 //*************************                       126 //*************************
125                                                   127 
126 gStyle->SetOptStat(0000);                         128 gStyle->SetOptStat(0000);
127 gStyle->SetOptFit();                              129 gStyle->SetOptFit();
128 gStyle->SetPalette(1);                            130 gStyle->SetPalette(1);
129 gROOT->SetStyle("Plain");                         131 gROOT->SetStyle("Plain");
130                                                   132 
131 //CYTOPLASM                                       133 //CYTOPLASM
132                                                   134 
133 c1->cd(7);  // axe YX                          << 135 c1.cd(7);  // axe YX
134   TH2F *hist = new TH2F("hist","hist",50,-20,2    136   TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20);
135   ntupleYX->Draw("Y:X>>hist","vox","colz");       137   ntupleYX->Draw("Y:X>>hist","vox","colz");
136   gPad->SetLogz();                                138   gPad->SetLogz();
137   hist->Draw("colz");                             139   hist->Draw("colz");
138   hist->GetXaxis()->SetLabelSize(0.025);          140   hist->GetXaxis()->SetLabelSize(0.025);
139   hist->GetYaxis()->SetLabelSize(0.025);          141   hist->GetYaxis()->SetLabelSize(0.025);
140   hist->GetZaxis()->SetLabelSize(0.025);          142   hist->GetZaxis()->SetLabelSize(0.025);
141   hist->GetXaxis()->SetTitleSize(0.035);          143   hist->GetXaxis()->SetTitleSize(0.035);
142   hist->GetYaxis()->SetTitleSize(0.035);          144   hist->GetYaxis()->SetTitleSize(0.035);
143   hist->GetXaxis()->SetTitleOffset(1.4);          145   hist->GetXaxis()->SetTitleOffset(1.4);
144   hist->GetYaxis()->SetTitleOffset(1.4);          146   hist->GetYaxis()->SetTitleOffset(1.4);
145   hist->GetXaxis()->SetTitle("Y (um)");        << 147   hist->GetXaxis()->SetTitle("Y (µm)");
146   hist->GetYaxis()->SetTitle("X (um)");        << 148   hist->GetYaxis()->SetTitle("X (µm)");
147   hist->SetTitle("Cytoplasm intensity on trans    149   hist->SetTitle("Cytoplasm intensity on transverse section");
148                                                   150 
149 //NUCLEUS                                         151 //NUCLEUS
150                                                   152 
151 c1->cd(3);  // axe YX                          << 153 c1.cd(3);  // axe YX
152   TH2F *hist2 = new TH2F("hist2","hist2",50,-2 << 154   TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20);
153   ntupleYXN->Draw("Y:X>>hist2","vox","colz");  << 155   ntupleYXN->Draw("Y:X>>hist","vox","colz");
154   gPad->SetLogz();                                156   gPad->SetLogz();
155   hist2->Draw("colz");                         << 157   hist->Draw("colz");
156   hist2->GetXaxis()->SetLabelSize(0.025);      << 158   hist->GetXaxis()->SetLabelSize(0.025);
157   hist2->GetYaxis()->SetLabelSize(0.025);      << 159   hist->GetYaxis()->SetLabelSize(0.025);
158   hist2->GetZaxis()->SetLabelSize(0.025);      << 160   hist->GetZaxis()->SetLabelSize(0.025);
159   hist2->GetXaxis()->SetTitleSize(0.035);      << 161   hist->GetXaxis()->SetTitleSize(0.035);
160   hist2->GetYaxis()->SetTitleSize(0.035);      << 162   hist->GetYaxis()->SetTitleSize(0.035);
161   hist2->GetXaxis()->SetTitleOffset(1.4);      << 163   hist->GetXaxis()->SetTitleOffset(1.4);
162   hist2->GetYaxis()->SetTitleOffset(1.4);      << 164   hist->GetYaxis()->SetTitleOffset(1.4);
163   hist2->GetXaxis()->SetTitle("Y (um)");       << 165   hist->GetXaxis()->SetTitle("Y (µm)");
164   hist2->GetYaxis()->SetTitle("X (um)");       << 166   hist->GetYaxis()->SetTitle("X (µm)");
165   hist2->SetTitle("Nucleus intensity on transv << 167   hist->SetTitle("Nucleus intensity on transverse section");
166                                                   168 
167 //                                                169 //
168                                                   170 
169 system ("rm -rf microbeam.root");                 171 system ("rm -rf microbeam.root");
170 system ("hadd -O microbeam.root microbeam_*.ro << 172 system ("hadd microbeam.root microbeam_*.root");
171                                                   173 
172 TFile f("microbeam.root");                        174 TFile f("microbeam.root"); 
173                                                   175 
174 TNtuple* ntuple0;                                 176 TNtuple* ntuple0;
175 TNtuple* ntuple1;                                 177 TNtuple* ntuple1;
176 TNtuple* ntuple2;                                 178 TNtuple* ntuple2;
177 TNtuple* ntuple3;                                 179 TNtuple* ntuple3;
178 TNtuple* ntuple4;                                 180 TNtuple* ntuple4;
179                                                   181 
180 ntuple0 = (TNtuple*)f.Get("ntuple0");          << 182 ntuple0 = (TNtuple*)f->Get("ntuple0"); 
181 ntuple1 = (TNtuple*)f.Get("ntuple1");          << 183 ntuple1 = (TNtuple*)f->Get("ntuple1"); 
182 ntuple2 = (TNtuple*)f.Get("ntuple2");          << 184 ntuple2 = (TNtuple*)f->Get("ntuple2"); 
183 ntuple3 = (TNtuple*)f.Get("ntuple3");          << 185 ntuple3 = (TNtuple*)f->Get("ntuple3"); 
184 ntuple4 = (TNtuple*)f.Get("ntuple4");          << 186 ntuple4 = (TNtuple*)f->Get("ntuple4"); 
185                                                << 187 
186 TH1F *h1bis  = new TH1F("h1bis","Dose distribu << 188 TH1F *h1  = new TH1F("h1","Dose distribution in Nucleus",100,0.001,1.);
187 TH1F *h10 = new TH1F("h10bis","Dose distributi << 189 TH1F *h10 = new TH1F("h10","Dose distribution in Cytoplasm",100,0.001,.2);
188                                                << 190 
189 c1->cd(2);                                     << 191 c1.cd(2);
190                                                << 192 
191         ntuple3->Project("h1bis","doseN");     << 193         ntuple3->Project("h1","doseN");
192   scale = 1/h1bis->Integral();                 << 194   scale = 1/h1->Integral();
193   h1bis->Scale(scale);                         << 195   h1->Scale(scale);
194   h1bis->Draw();                               << 196   h1->Draw();
195   h1bis->GetXaxis()->SetLabelSize(0.025);      << 197   h1->GetXaxis()->SetLabelSize(0.025);
196   h1bis->GetYaxis()->SetLabelSize(0.025);      << 198   h1->GetYaxis()->SetLabelSize(0.025);
197   h1bis->GetXaxis()->SetTitleSize(0.035);      << 199   h1->GetXaxis()->SetTitleSize(0.035);
198   h1bis->GetYaxis()->SetTitleSize(0.035);      << 200   h1->GetYaxis()->SetTitleSize(0.035);
199   h1bis->GetXaxis()->SetTitleOffset(1.4);      << 201   h1->GetXaxis()->SetTitleOffset(1.4);
200   h1bis->GetYaxis()->SetTitleOffset(1.4);      << 202   h1->GetYaxis()->SetTitleOffset(1.4);
201   h1bis->GetXaxis()->SetTitle("Absorbed dose ( << 203   h1->GetXaxis()->SetTitle("Absorbed dose (Gy)");
202   h1bis->GetYaxis()->SetTitle("Fraction of eve << 204   h1->GetYaxis()->SetTitle("Fraction of events");
203   h1bis->SetLineColor(3);                      << 205   h1->SetLineColor(3);
204   h1bis->SetFillColor(3);                      << 206   h1->SetFillColor(3);
205                                                   207 
206 //*****************                               208 //*****************
207 // DOSE IN CYTOPLASM                              209 // DOSE IN CYTOPLASM
208 //*****************                               210 //*****************
209                                                   211 
210 c1->cd(6);                                     << 212 c1.cd(6);
211         ntuple3->Project("h10bis","doseC");    << 213         ntuple3->Project("h10","doseC");
212         scale = 1/h10->Integral();                214         scale = 1/h10->Integral();
213   h10->Scale(scale);                              215   h10->Scale(scale);
214   h10->Draw();                                    216   h10->Draw();
215   h10->GetXaxis()->SetLabelSize(0.025);           217   h10->GetXaxis()->SetLabelSize(0.025);
216   h10->GetYaxis()->SetLabelSize(0.025);           218   h10->GetYaxis()->SetLabelSize(0.025);
217   h10->GetXaxis()->SetTitleSize(0.035);           219   h10->GetXaxis()->SetTitleSize(0.035);
218   h10->GetYaxis()->SetTitleSize(0.035);           220   h10->GetYaxis()->SetTitleSize(0.035);
219   h10->GetXaxis()->SetTitleOffset(1.4);           221   h10->GetXaxis()->SetTitleOffset(1.4);
220   h10->GetYaxis()->SetTitleOffset(1.4);           222   h10->GetYaxis()->SetTitleOffset(1.4);
221   h10->GetXaxis()->SetTitle("Absorbed dose (Gy    223   h10->GetXaxis()->SetTitle("Absorbed dose (Gy)");
222   h10->GetYaxis()->SetTitle("Fraction of event    224   h10->GetYaxis()->SetTitle("Fraction of events");
223   h10->SetLineColor(2);                           225   h10->SetLineColor(2);
224   h10->SetFillColor(2);                           226   h10->SetFillColor(2);
225                                                   227 
226 //********************************                228 //********************************
227 // STOPPING POWER AT CELL ENTRANCE                229 // STOPPING POWER AT CELL ENTRANCE
228 //********************************                230 //********************************
229                                                   231  
230 gStyle->SetOptStat(0000);                         232 gStyle->SetOptStat(0000);
231 gStyle->SetOptFit();                              233 gStyle->SetOptFit();
232 gStyle->SetPalette(1);                            234 gStyle->SetPalette(1);
233 gROOT->SetStyle("Plain");                         235 gROOT->SetStyle("Plain");
234                                                   236 
235 Float_t d;                                        237 Float_t d;
236                                                   238 
237 TH1F *h2bis = new TH1F("h2bis","Beam stopping  << 239 TH1F *h2 = new TH1F("h2","Beam stopping power at cell entrance",200,0,300); 
238                                                   240     
239 c1->cd(9);                                     << 241 c1.cd(9);
240         ntuple0->Project("h2bis","sp");        << 242         ntuple0->Project("h2","sp");
241   scale = 1/h2bis->Integral();                 << 243   scale = 1/h2->Integral();
242   h2bis->Scale(scale);                         << 244   h2->Scale(scale);
243   h2bis->Draw();                               << 245   h2->Draw();
244   h2bis->GetXaxis()->SetLabelSize(0.025);      << 246   h2->GetXaxis()->SetLabelSize(0.025);
245   h2bis->GetYaxis()->SetLabelSize(0.025);      << 247   h2->GetYaxis()->SetLabelSize(0.025);
246   h2bis->GetXaxis()->SetTitleSize(0.035);      << 248   h2->GetXaxis()->SetTitleSize(0.035);
247   h2bis->GetYaxis()->SetTitleSize(0.035);      << 249   h2->GetYaxis()->SetTitleSize(0.035);
248   h2bis->GetXaxis()->SetTitleOffset(1.4);      << 250   h2->GetXaxis()->SetTitleOffset(1.4);
249   h2bis->GetYaxis()->SetTitleOffset(1.4);      << 251   h2->GetYaxis()->SetTitleOffset(1.4);
250     h2bis->GetXaxis()->SetTitle("dE/dx (keV/um << 252     h2->GetXaxis()->SetTitle("dE/dx (keV/µm)");
251   h2bis->GetYaxis()->SetTitle("Fraction of eve << 253   h2->GetYaxis()->SetTitle("Fraction of events");
252     h2bis->SetTitle("dE/dx at cell entrance"); << 254     h2->SetTitle("dE/dx at cell entrance");
253   h2bis->SetFillColor(4);                      << 255   h2->SetFillColor(4);
254   h2bis->SetLineColor(4);                      << 256   h2->SetLineColor(4);
255   h2bis->Fit("gaus");                          << 257   h2->Fit("gaus");
256   gaus->SetLineColor(6);                          258   gaus->SetLineColor(6);
257   h2bis->Fit("gaus");                          << 259   h2->Fit("gaus");
                                                   >> 260 
258                                                   261 
259 //**************                                  262 //**************
260 // RANGE IN CELL                                  263 // RANGE IN CELL
261 //**************                                  264 //**************
262                                                   265 
263 Double_t Xc,Zc,X1,Y1,Z1,X2,Y2,Z2;                 266 Double_t Xc,Zc,X1,Y1,Z1,X2,Y2,Z2;
264                                                   267 
265 // X position of target in World                  268 // X position of target in World
266 Xc = -1295.59e3 - 955e3*sin(10*TMath::Pi()/180    269 Xc = -1295.59e3 - 955e3*sin(10*TMath::Pi()/180); 
267                                                   270 
268 // Z position of target in World                  271 // Z position of target in World
269 Zc = -1327e3 + 955e3*cos(10*TMath::Pi()/180);     272 Zc = -1327e3 + 955e3*cos(10*TMath::Pi()/180); 
270                                                   273 
271 // Line alignment (cf MicrobeamEMField.cc)        274 // Line alignment (cf MicrobeamEMField.cc)
272 Xc = Xc + 5.24*cos(10*TMath::Pi()/180);           275 Xc = Xc + 5.24*cos(10*TMath::Pi()/180);
273 Zc = Zc + 5.24*sin(10*TMath::Pi()/180);           276 Zc = Zc + 5.24*sin(10*TMath::Pi()/180);
274                                                   277 
275 TNtuple *ntupleR = new TNtuple("Rmax","ntuple"    278 TNtuple *ntupleR = new TNtuple("Rmax","ntuple","Z2:Y2:X2");
276 Double_t x,y,z,xx,zz;                             279 Double_t x,y,z,xx,zz;
277 ntuple2->SetBranchAddress("x",&x);                280 ntuple2->SetBranchAddress("x",&x);
278 ntuple2->SetBranchAddress("y",&y);                281 ntuple2->SetBranchAddress("y",&y);
279 ntuple2->SetBranchAddress("z",&z);                282 ntuple2->SetBranchAddress("z",&z);
280 Int_t nentries = (Int_t)ntuple2->GetEntries();    283 Int_t nentries = (Int_t)ntuple2->GetEntries();
281 for (Int_t i=0;i<nentries;i++)                    284 for (Int_t i=0;i<nentries;i++) 
282 {                                                 285 {
283       ntuple2->GetEntry(i);                       286       ntuple2->GetEntry(i);
284       X1=x;                                       287       X1=x;
285       Y1=y;                                       288       Y1=y;
286       Z1=z;                                       289       Z1=z;
287       xx = X1-Xc;                                 290       xx = X1-Xc;
288       zz = Z1-Zc;                                 291       zz = Z1-Zc;
289       Z2 = zz*cos(10*TMath::Pi()/180)-xx*sin(1    292       Z2 = zz*cos(10*TMath::Pi()/180)-xx*sin(10*TMath::Pi()/180);
290       X2 = zz*sin(10*TMath::Pi()/180)+xx*cos(1    293       X2 = zz*sin(10*TMath::Pi()/180)+xx*cos(10*TMath::Pi()/180);
291       Y2 = Y1;                                    294       Y2 = Y1;    
292       ntupleR->Fill(Z2,Y2,X2);                    295       ntupleR->Fill(Z2,Y2,X2);
293 }                                                 296 }
294                                                   297      
295 c1->cd(10);                                    << 298 c1.cd(10);
296   ntupleR->Draw("X2:Z2","abs(X2)<50","surf3");    299   ntupleR->Draw("X2:Z2","abs(X2)<50","surf3");
297   gPad->SetLogz();                                300   gPad->SetLogz();
                                                   >> 301   /*
                                                   >> 302   htemp->GetXaxis()->SetLabelSize(0.025);
                                                   >> 303   htemp->GetYaxis()->SetLabelSize(0.025);
                                                   >> 304   htemp->GetZaxis()->SetLabelSize(0.025);
                                                   >> 305   htemp->GetXaxis()->SetTitleSize(0.035);
                                                   >> 306   htemp->GetYaxis()->SetTitleSize(0.035);
                                                   >> 307   htemp->GetXaxis()->SetTitleOffset(1.4);
                                                   >> 308   htemp->GetYaxis()->SetTitleOffset(1.4);
                                                   >> 309   htemp->GetXaxis()->SetTitle("Z (µm)");
                                                   >> 310   htemp->GetYaxis()->SetTitle("X (µm)");
                                                   >> 311   htemp->SetTitle("Range in cell");
                                                   >> 312   */
298                                                   313 
299 //****************                                314 //****************
300 // ENERGY DEPOSITS                                315 // ENERGY DEPOSITS 
301 //****************                                316 //****************
302                                                   317 
                                                   >> 318 
303 gStyle->SetOptStat(0000);                         319 gStyle->SetOptStat(0000);
304 gStyle->SetOptFit();                              320 gStyle->SetOptFit();
305 gStyle->SetPalette(1);                            321 gStyle->SetPalette(1);
306 gROOT->SetStyle("Plain");                         322 gROOT->SetStyle("Plain");
307                                                   323 
308 c1->cd(11);                                    << 324 c1.cd(11);
309   TH2F *histbis = new TH2F("histbis","histbis" << 325   TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20);
310   ntuple4->Draw("y*0.359060:x*0.359060>>histbi << 326   ntuple4->Draw("y*0.359060:x*0.359060>>hist","doseV","contz");
311   gPad->SetLogz();                                327   gPad->SetLogz();
312   histbis->Draw("contz");                      << 328   hist->Draw("contz");
313   histbis->GetXaxis()->SetLabelSize(0.025);    << 329   hist->GetXaxis()->SetLabelSize(0.025);
314   histbis->GetYaxis()->SetLabelSize(0.025);    << 330   hist->GetYaxis()->SetLabelSize(0.025);
315   histbis->GetZaxis()->SetLabelSize(0.025);    << 331   hist->GetZaxis()->SetLabelSize(0.025);
316   histbis->GetXaxis()->SetTitleSize(0.035);    << 332   hist->GetXaxis()->SetTitleSize(0.035);
317   histbis->GetYaxis()->SetTitleSize(0.035);    << 333   hist->GetYaxis()->SetTitleSize(0.035);
318   histbis->GetXaxis()->SetTitleOffset(1.4);    << 334   hist->GetXaxis()->SetTitleOffset(1.4);
319   histbis->GetYaxis()->SetTitleOffset(1.4);    << 335   hist->GetYaxis()->SetTitleOffset(1.4);
320   histbis->GetXaxis()->SetTitle("Y (um)");     << 336   hist->GetXaxis()->SetTitle("Y (µm)");
321   histbis->GetYaxis()->SetTitle("X (um)");     << 337   hist->GetYaxis()->SetTitle("X (µm)");
322   histbis->SetTitle("Energy deposit -transvers << 338   hist->SetTitle("Mean energy deposit -transverse- (z axis in eV)");
323                                                << 339 
324 c1->cd(12);                                    << 340   
325   TH2F *histter = new TH2F("histter","histter" << 341 c1.cd(12);
326   ntuple4->Draw("x*0.359060:(z+1500/0.162810+2 << 342   TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20);
                                                   >> 343   ntuple4->Draw("x*0.359060:z*0.162810>>hist","doseV","contz");
327   gPad->SetLogz();                                344   gPad->SetLogz();
328   histter->Draw("contz");                      << 345   hist->Draw("contz");
329   histter->GetXaxis()->SetLabelSize(0.025);    << 346   hist->GetXaxis()->SetLabelSize(0.025);
330   histter->GetYaxis()->SetLabelSize(0.025);    << 347   hist->GetYaxis()->SetLabelSize(0.025);
331   histter->GetZaxis()->SetLabelSize(0.025);    << 348   hist->GetZaxis()->SetLabelSize(0.025);
332   histter->GetXaxis()->SetTitleSize(0.035);    << 349   hist->GetXaxis()->SetTitleSize(0.035);
333   histter->GetYaxis()->SetTitleSize(0.035);    << 350   hist->GetYaxis()->SetTitleSize(0.035);
334   histter->GetXaxis()->SetTitleOffset(1.4);    << 351   hist->GetXaxis()->SetTitleOffset(1.4);
335   histter->GetYaxis()->SetTitleOffset(1.4);    << 352   hist->GetYaxis()->SetTitleOffset(1.4);
336   histter->GetXaxis()->SetTitle("Z (um)");     << 353   hist->GetXaxis()->SetTitle("Z (µm)");
337   histter->GetYaxis()->SetTitle("X (um)");     << 354   hist->GetYaxis()->SetTitle("X (µm)");
338   histter->SetTitle("Energy deposit -longitudi << 355   hist->SetTitle("Mean energy deposit -longitudinal- (z axis in eV)");
339                                                   356 
340 //*******************************                 357 //*******************************
341 // BEAM POSITION AT CELL ENTRANCE                 358 // BEAM POSITION AT CELL ENTRANCE
342 //*******************************                 359 //*******************************
343                                                   360  
344 gStyle->SetOptStat(0000);                         361 gStyle->SetOptStat(0000);
345 gStyle->SetOptFit();                              362 gStyle->SetOptFit();
346 gStyle->SetPalette(1);                            363 gStyle->SetPalette(1);
347 gROOT->SetStyle("Plain");                         364 gROOT->SetStyle("Plain");
348                                                   365 
349 TH1F *h77 = new TH1F("hx","h1",200,-10,10);       366 TH1F *h77 = new TH1F("hx","h1",200,-10,10); 
350 TH1F *h88 = new TH1F("hy","h1",200,-10,10);       367 TH1F *h88 = new TH1F("hy","h1",200,-10,10); 
351                                                   368    
352 c1->cd(4);                                     << 369 c1.cd(4);
353         ntuple1->Project("hx","x");               370         ntuple1->Project("hx","x");
354   scale = 1/h77->Integral();                      371   scale = 1/h77->Integral();
355   h77->Scale(scale);                              372   h77->Scale(scale);
356   h77->Draw();                                    373   h77->Draw();
357   h77->GetXaxis()->SetLabelSize(0.025);           374   h77->GetXaxis()->SetLabelSize(0.025);
358   h77->GetYaxis()->SetLabelSize(0.025);           375   h77->GetYaxis()->SetLabelSize(0.025);
359   h77->GetXaxis()->SetTitleSize(0.035);           376   h77->GetXaxis()->SetTitleSize(0.035);
360   h77->GetYaxis()->SetTitleSize(0.035);           377   h77->GetYaxis()->SetTitleSize(0.035);
361   h77->GetXaxis()->SetTitleOffset(1.4);           378   h77->GetXaxis()->SetTitleOffset(1.4);
362   h77->GetYaxis()->SetTitleOffset(1.4);           379   h77->GetYaxis()->SetTitleOffset(1.4);
363     h77->GetXaxis()->SetTitle("Position (um)") << 380     h77->GetXaxis()->SetTitle("Position (µm)");
364   h77->GetYaxis()->SetTitle("Fraction of event    381   h77->GetYaxis()->SetTitle("Fraction of events");
365     h77->SetTitle("Beam X position on cell");     382     h77->SetTitle("Beam X position on cell");
366   h77->SetFillColor(4);                           383   h77->SetFillColor(4);
367   h77->SetLineColor(4);                           384   h77->SetLineColor(4);
                                                   >> 385   gaus->SetLineColor(6);
368   h77->Fit("gaus");                               386   h77->Fit("gaus");
369                                                   387 
370 c1->cd(8);                                     << 388 c1.cd(8);
371         ntuple1->Project("hy","y");               389         ntuple1->Project("hy","y");
372   scale = 1/h88->Integral();                      390   scale = 1/h88->Integral();
373   h88->Scale(scale);                              391   h88->Scale(scale);
374   h88->Draw();                                    392   h88->Draw();
375   h88->GetXaxis()->SetLabelSize(0.025);           393   h88->GetXaxis()->SetLabelSize(0.025);
376   h88->GetYaxis()->SetLabelSize(0.025);           394   h88->GetYaxis()->SetLabelSize(0.025);
377   h88->GetXaxis()->SetTitleSize(0.035);           395   h88->GetXaxis()->SetTitleSize(0.035);
378   h88->GetYaxis()->SetTitleSize(0.035);           396   h88->GetYaxis()->SetTitleSize(0.035);
379   h88->GetXaxis()->SetTitleOffset(1.4);           397   h88->GetXaxis()->SetTitleOffset(1.4);
380   h88->GetYaxis()->SetTitleOffset(1.4);           398   h88->GetYaxis()->SetTitleOffset(1.4);
381     h88->GetXaxis()->SetTitle("Position (um)") << 399     h88->GetXaxis()->SetTitle("Position (µm)");
382   h88->GetYaxis()->SetTitle("Fraction of event    400   h88->GetYaxis()->SetTitle("Fraction of events");
383     h88->SetTitle("Beam Y position on cell");     401     h88->SetTitle("Beam Y position on cell");
384   h88->SetFillColor(4);                           402   h88->SetFillColor(4);
385   h88->SetLineColor(4);                           403   h88->SetLineColor(4);
                                                   >> 404   gaus->SetLineColor(6);
386   h88->Fit("gaus");                               405   h88->Fit("gaus");
                                                   >> 406 
387 }                                                 407 }
388                                                   408