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25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // The Geant4-DNA web site is available at htt 30 // The Geant4-DNA web site is available at http://geant4-dna.org
31 // 31 //
32 // If you use this example, please cite the fo 32 // If you use this example, please cite the following publication:
33 // Rad. Prot. Dos. 133 (2009) 2-11 33 // Rad. Prot. Dos. 133 (2009) 2-11
34 34
35 #ifndef CellParameterisation_H 35 #ifndef CellParameterisation_H
36 #define CellParameterisation_H 1 36 #define CellParameterisation_H 1
37 37
38 #include "G4VPVParameterisation.hh" 38 #include "G4VPVParameterisation.hh"
39 #include "G4VisAttributes.hh" 39 #include "G4VisAttributes.hh"
40 40
41 //....oooOO0OOooo........oooOO0OOooo........oo 41 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
42 42
43 class CellParameterisation : public G4VPVParam 43 class CellParameterisation : public G4VPVParameterisation
44 { 44 {
45 public: 45 public:
46 46
47 explicit CellParameterisation 47 explicit CellParameterisation
48 (G4Material* nucleus1, G4Material* cytopla 48 (G4Material* nucleus1, G4Material* cytoplasm1,
49 G4Material* nucleus2, G4Material* cytopla 49 G4Material* nucleus2, G4Material* cytoplasm2,
50 G4Material* nucleus3, G4Material* cytopla 50 G4Material* nucleus3, G4Material* cytoplasm3
51 ); 51 );
52 52
53 ~CellParameterisation() override; 53 ~CellParameterisation() override;
54 54
55 void ComputeTransformation (const G4int co 55 void ComputeTransformation (const G4int copyNo,G4VPhysicalVolume* physVol) const override;
56 56
57 void ComputeDimensions(G4Box&, 57 void ComputeDimensions(G4Box&,
58 const G4int, 58 const G4int,
59 const G4VPhysicalVolume* ) const ove 59 const G4VPhysicalVolume* ) const override;
60 60
61 void ComputeDimensions(G4Tubs &, 61 void ComputeDimensions(G4Tubs &,
62 const G4int 62 const G4int,
63 const G4VPh 63 const G4VPhysicalVolume *) const override {}
64 64
65 void ComputeDimensions(G4Trd &, 65 void ComputeDimensions(G4Trd &,
66 const G4int 66 const G4int,
67 const G4VPh 67 const G4VPhysicalVolume *) const override {}
68 68
69 void ComputeDimensions(G4Trap &, 69 void ComputeDimensions(G4Trap &,
70 const G4int 70 const G4int,
71 const G4VPh 71 const G4VPhysicalVolume *) const override {}
72 72
73 void ComputeDimensions(G4Cons &, 73 void ComputeDimensions(G4Cons &,
74 const G4int 74 const G4int,
75 const G4VPh 75 const G4VPhysicalVolume *) const override{}
76 76
77 void ComputeDimensions(G4Sphere &, 77 void ComputeDimensions(G4Sphere &,
78 const G4int 78 const G4int,
79 const G4VPh 79 const G4VPhysicalVolume *) const override{}
80 80
81 void ComputeDimensions(G4Ellipsoid &, 81 void ComputeDimensions(G4Ellipsoid &,
82 const G4int 82 const G4int,
83 const G4VPh 83 const G4VPhysicalVolume *) const override{}
84 84
85 void ComputeDimensions(G4Orb &, 85 void ComputeDimensions(G4Orb &,
86 const G4int 86 const G4int,
87 const G4VPh 87 const G4VPhysicalVolume *) const override{}
88 88
89 void ComputeDimensions(G4Torus &, 89 void ComputeDimensions(G4Torus &,
90 const G4int 90 const G4int,
91 const G4VPh 91 const G4VPhysicalVolume *) const override{}
92 92
93 void ComputeDimensions(G4Para &, 93 void ComputeDimensions(G4Para &,
94 const G4int 94 const G4int,
95 const G4VPh 95 const G4VPhysicalVolume *) const override{}
96 96
97 void ComputeDimensions(G4Polycone &, 97 void ComputeDimensions(G4Polycone &,
98 const G4int 98 const G4int,
99 const G4VPh 99 const G4VPhysicalVolume *) const override{}
100 100
101 void ComputeDimensions(G4Polyhedra &, 101 void ComputeDimensions(G4Polyhedra &,
102 const G4int 102 const G4int,
103 const G4VPh 103 const G4VPhysicalVolume *) const override{}
104 104
105 void ComputeDimensions(G4Hype &, 105 void ComputeDimensions(G4Hype &,
106 const G4int 106 const G4int,
107 const G4VPh 107 const G4VPhysicalVolume *) const override{}
108 108
109 G4int GetNoBoxes() const {return fPhantomT 109 G4int GetNoBoxes() const {return fPhantomTotalPixels;}
110 110
111 G4Material* ComputeMaterial(const G4int co 111 G4Material* ComputeMaterial(const G4int copyNo,
112 G4VPhysi 112 G4VPhysicalVolume* physVol,
113 const G4VTouch 113 const G4VTouchable*) override;
114 114
115 // NEW 115 // NEW
116 116
117 G4int GetPhantomTotalPixels() const {r 117 G4int GetPhantomTotalPixels() const {return fPhantomTotalPixels;}
118 G4int GetNucleusTotalPixels() const {r 118 G4int GetNucleusTotalPixels() const {return fNucleusTotalPixels;}
119 G4int GetCytoplasmTotalPixels() const {r 119 G4int GetCytoplasmTotalPixels() const {return fCytoplasmTotalPixels;}
120 G4double GetPixelSizeX() const {r 120 G4double GetPixelSizeX() const {return fDimCellBoxX;}
121 G4double GetPixelSizeY() const {r 121 G4double GetPixelSizeY() const {return fDimCellBoxY;}
122 G4double GetPixelSizeZ() const {r 122 G4double GetPixelSizeZ() const {return fDimCellBoxZ;}
123 G4double GetCytoplasmMass() const {r 123 G4double GetCytoplasmMass() const {return fCytoplasmMass;}
124 G4double GetNucleusMass() const {r 124 G4double GetNucleusMass() const {return fNucleusMass;}
125 125
126 G4ThreeVector GetVoxelThreeVector(G4int i) 126 G4ThreeVector GetVoxelThreeVector(G4int i) const {return fMapCell[i];}
127 G4double GetMaterialVector(G4int i) 127 G4double GetMaterialVector(G4int i) const {return fMaterial[i];}
128 G4double GetMassVector(G4int i) 128 G4double GetMassVector(G4int i) const {return fMass[i];}
129 G4int GetTissueType(G4int i) 129 G4int GetTissueType(G4int i) const {return fTissueType[i];}
130 130
131 // SINGLETON 131 // SINGLETON
132 132
133 static CellParameterisation * Instance() 133 static CellParameterisation * Instance()
134 { 134 {
135 return gInstance; 135 return gInstance;
136 } 136 }
137 137
138 private: 138 private:
139 static CellParameterisation* gInstance; 139 static CellParameterisation* gInstance;
140 140
141 G4Material * fNucleusMaterial1; 141 G4Material * fNucleusMaterial1;
142 G4Material * fCytoplasmMaterial1; 142 G4Material * fCytoplasmMaterial1;
143 G4Material * fNucleusMaterial2; 143 G4Material * fNucleusMaterial2;
144 G4Material * fCytoplasmMaterial2; 144 G4Material * fCytoplasmMaterial2;
145 G4Material * fNucleusMaterial3; 145 G4Material * fNucleusMaterial3;
146 G4Material * fCytoplasmMaterial3; 146 G4Material * fCytoplasmMaterial3;
147 147
148 G4VisAttributes * fNucleusAttributes1; 148 G4VisAttributes * fNucleusAttributes1;
149 G4VisAttributes * fCytoplasmAttributes1; 149 G4VisAttributes * fCytoplasmAttributes1;
150 G4VisAttributes * fNucleusAttributes2; 150 G4VisAttributes * fNucleusAttributes2;
151 G4VisAttributes * fCytoplasmAttributes2; 151 G4VisAttributes * fCytoplasmAttributes2;
152 G4VisAttributes * fNucleusAttributes3; 152 G4VisAttributes * fNucleusAttributes3;
153 G4VisAttributes * fCytoplasmAttributes3; 153 G4VisAttributes * fCytoplasmAttributes3;
154 154
155 G4ThreeVector * fMapCell; // VOXEL COOR 155 G4ThreeVector * fMapCell; // VOXEL COORDINATES
156 156
157 G4double * fMaterial; // MATERIAL 157 G4double * fMaterial; // MATERIAL
158 G4double * fMass; // DENSITY RE 158 G4double * fMass; // DENSITY REGION
159 G4double fDimCellBoxX; 159 G4double fDimCellBoxX;
160 G4double fDimCellBoxY; 160 G4double fDimCellBoxY;
161 G4double fDimCellBoxZ; 161 G4double fDimCellBoxZ;
162 G4double fNucleusMass; 162 G4double fNucleusMass;
163 G4double fCytoplasmMass; 163 G4double fCytoplasmMass;
164 164
165 G4int * fTissueType; // DENSITY RE 165 G4int * fTissueType; // DENSITY REGION
166 G4int fPhantomTotalPixels; 166 G4int fPhantomTotalPixels;
167 G4int fNucleusTotalPixels; 167 G4int fNucleusTotalPixels;
168 G4int fCytoplasmTotalPixels; 168 G4int fCytoplasmTotalPixels;
169 }; 169 };
170 #endif 170 #endif
171 171
172 172
173 173