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25 // 25 //
26 // Hadrontherapy advanced example for Geant4 << 26 // This is the *BASIC* version of Hadrontherapy, a Geant4-based application
27 // See more at: https://twiki.cern.ch/twiki/bi << 27 // See more at: http://g4advancedexamples.lngs.infn.it/Examples/hadrontherapy
>> 28 //
>> 29 // Visit the Hadrontherapy web site (http://www.lns.infn.it/link/Hadrontherapy) to request
>> 30 // the *COMPLETE* version of this program, together with its documentation;
>> 31 // Hadrontherapy (both basic and full version) are supported by the Italian INFN
>> 32 // Institute in the framework of the MC-INFN Group
>> 33 //
>> 34
>> 35 #include "HadrontherapyMatrix.hh"
>> 36 #include "HadrontherapyAnalysisManager.hh"
>> 37 #include "G4RunManager.hh"
>> 38 #include "HadrontherapyPrimaryGeneratorAction.hh"
>> 39 #include "G4ParticleGun.hh"
28 40
29 #include <fstream> 41 #include <fstream>
>> 42 #include <unistd.h>
30 #include <iostream> 43 #include <iostream>
31 #include <sstream> 44 #include <sstream>
32 #include <iomanip> 45 #include <iomanip>
33 <<
34 #include "HadrontherapyMatrix.hh" <<
35 #include "HadrontherapyPrimaryGeneratorAction. <<
36 #include "globals.hh" 46 #include "globals.hh"
37 #include "G4SystemOfUnits.hh" <<
38 #include "G4RunManager.hh" <<
39 #include "G4ParticleGun.hh" <<
40 #include "HadrontherapySteppingAction.hh" <<
41 #include "HadrontherapyAnalysisFileMessenger.h <<
42 #include "G4SystemOfUnits.hh" <<
43 #include <time.h> <<
44 <<
45 HadrontherapyAnalysis* HadrontherapyAnalysis:: <<
46 ////////////////////////////////////////////// <<
47 <<
48 HadrontherapyAnalysis::HadrontherapyAnalysis() <<
49 { <<
50 fMess = new HadrontherapyAnalysisFileMesse <<
51 } <<
52 <<
53 ////////////////////////////////////////////// <<
54 HadrontherapyAnalysis::~HadrontherapyAnalysis( <<
55 { <<
56 delete fMess; <<
57 } <<
58 <<
59 ////////////////////////////////////////////// <<
60 HadrontherapyAnalysis* HadrontherapyAnalysis:: <<
61 <<
62 if (instance == 0) instance = new Hadronth <<
63 return instance; <<
64 } <<
65 47
>> 48 // Units definition: CLHEP/Units/SystemOfUnits.h
>> 49 //
66 HadrontherapyMatrix* HadrontherapyMatrix::inst 50 HadrontherapyMatrix* HadrontherapyMatrix::instance = NULL;
67 G4bool HadrontherapyMatrix::secondary = false; 51 G4bool HadrontherapyMatrix::secondary = false;
68 52
69 <<
70 // Only return a pointer to matrix 53 // Only return a pointer to matrix
71 HadrontherapyMatrix* HadrontherapyMatrix::GetI << 54 HadrontherapyMatrix* HadrontherapyMatrix::GetInstance()
72 { 55 {
73 return instance; << 56 return instance;
74 } 57 }
75 << 58 // This STATIC method delete (!) the old matrix and rewrite a new object returning a pointer to it
76 ////////////////////////////////////////////// << 59 // TODO A check on the parameters is required!
77 // This STATIC method delete (!) the old matri << 60 HadrontherapyMatrix* HadrontherapyMatrix::GetInstance(G4int voxelX, G4int voxelY, G4int voxelZ, G4double mass)
78 // TODO A check on the parameters is required! << 61 {
79 HadrontherapyMatrix* HadrontherapyMatrix::GetI << 62 if (instance) delete instance;
80 { << 63 instance = new HadrontherapyMatrix(voxelX, voxelY, voxelZ, mass);
81 if (instance) delete instance; << 64 instance -> Initialize();
82 instance = new HadrontherapyMatrix(voxelX, << 65 return instance;
83 instance -> Initialize(); <<
84 return instance; <<
85 } 66 }
86 <<
87 ////////////////////////////////////////////// <<
88 HadrontherapyMatrix::HadrontherapyMatrix(G4int 67 HadrontherapyMatrix::HadrontherapyMatrix(G4int voxelX, G4int voxelY, G4int voxelZ, G4double mass):
89 stdFile("Dose.out"), 68 stdFile("Dose.out"),
90 doseUnit(gray) << 69 doseUnit(MeV/g)
91 { << 70 {
92 // Number of the voxels of the phantom << 71 // Number of the voxels of the phantom
93 // For Y = Z = 1 the phantom is divided in << 72 // For Y = Z = 1 the phantom is divided in slices (and not in voxels)
94 // orthogonal to the beam axis << 73 // orthogonal to the beam axis
95 numberOfVoxelAlongX = voxelX; << 74 numberOfVoxelAlongX = voxelX;
96 numberOfVoxelAlongY = voxelY; << 75 numberOfVoxelAlongY = voxelY;
97 numberOfVoxelAlongZ = voxelZ; << 76 numberOfVoxelAlongZ = voxelZ;
98 massOfVoxel = mass; << 77 massOfVoxel = mass;
99 << 78 // Create the dose matrix
100 << 79 matrix = new G4double[numberOfVoxelAlongX*numberOfVoxelAlongY*numberOfVoxelAlongZ];
101 // Create the dose matrix << 80 if (matrix)
102 matrix = new G4double[numberOfVoxelAlongX* << 81 {
103 if (matrix) << 82 G4cout << "HadrontherapyMatrix: Memory space to store physical dose into " <<
104 { << 83 numberOfVoxelAlongX*numberOfVoxelAlongY*numberOfVoxelAlongZ <<
105 G4cout << "HadrontherapyMatrix: Memory << 84 " voxels has been allocated " << G4endl;
106 numberOfVoxelAlongX*numberOf << 85 }
107 " voxels has been allocated << 86 else G4Exception(" HadrontherapyMatrix::HadrontherapyMatrix. Can't allocate memory to store physical dose!");
108 } << 87 // Hit voxel (TrackID) marker
109 << 88 // This array mark the status of voxel, if a hit occur, with the trackID of the particle
110 else G4Exception("HadrontherapyMatrix::Had << 89 // Must be initialized
111 << 90 hitTrack = new G4int[numberOfVoxelAlongX*numberOfVoxelAlongY*numberOfVoxelAlongZ];
112 << 91 ClearHitTrack();
113 // Hit voxel (TrackID) marker <<
114 // This array mark the status of voxel, if <<
115 // Must be initialized <<
116 <<
117 hitTrack = new G4int[numberOfVoxelAlongX*n <<
118 ClearHitTrack(); <<
119 } 92 }
120 93
121 ////////////////////////////////////////////// 94 /////////////////////////////////////////////////////////////////////////////
122 HadrontherapyMatrix::~HadrontherapyMatrix() 95 HadrontherapyMatrix::~HadrontherapyMatrix()
123 { 96 {
124 delete[] matrix; 97 delete[] matrix;
125 delete[] hitTrack; 98 delete[] hitTrack;
>> 99 // free fluences/dose data memory
126 Clear(); 100 Clear();
127 } 101 }
128 102
129 ////////////////////////////////////////////// 103 /////////////////////////////////////////////////////////////////////////////
130 void HadrontherapyMatrix::Clear() 104 void HadrontherapyMatrix::Clear()
131 { 105 {
132 for (size_t i=0; i<ionStore.size(); i++) 106 for (size_t i=0; i<ionStore.size(); i++)
133 { 107 {
134 delete[] ionStore[i].dose; << 108 delete[] ionStore[i].dose;
135 delete[] ionStore[i].fluence; << 109 delete[] ionStore[i].fluence;
136 } 110 }
137 ionStore.clear(); 111 ionStore.clear();
138 } 112 }
139 113
140 ////////////////////////////////////////////// 114 /////////////////////////////////////////////////////////////////////////////
141 // Initialise the elements of the matrix to ze 115 // Initialise the elements of the matrix to zero
142 <<
143 void HadrontherapyMatrix::Initialize() 116 void HadrontherapyMatrix::Initialize()
144 { << 117 {
145 // Clear ions store 118 // Clear ions store
146 Clear(); 119 Clear();
147 // Clear dose 120 // Clear dose
148 for(int i=0;i<numberOfVoxelAlongX*numberOf 121 for(int i=0;i<numberOfVoxelAlongX*numberOfVoxelAlongY*numberOfVoxelAlongZ;i++)
149 { 122 {
150 matrix[i] = 0; << 123 matrix[i] = 0;
151 } 124 }
152 } 125 }
153 << 126 /////////////////////////////////////////////////////////////////////////////
154 ////////////////////////////////////////////// << 127 /////////////////////////////////////////////////////////////////////////////
155 // Print generated nuclides list << 128 // Print generated nuclides list
156 <<
157 ////////////////////////////////////////////// <<
158 void HadrontherapyMatrix::PrintNuclides() 129 void HadrontherapyMatrix::PrintNuclides()
159 { 130 {
160 for (size_t i=0; i<ionStore.size(); i++) 131 for (size_t i=0; i<ionStore.size(); i++)
161 { 132 {
162 G4cout << ionStore[i].name << G4endl; << 133 G4cout << ionStore[i].name << G4endl;
163 } 134 }
164 } 135 }
165 << 136 /////////////////////////////////////////////////////////////////////////////
166 ////////////////////////////////////////////// << 137 // Clear Hit voxel (TrackID) markers
167 // Clear Hit voxel (TrackID) markers <<
168 <<
169 void HadrontherapyMatrix::ClearHitTrack() 138 void HadrontherapyMatrix::ClearHitTrack()
170 { 139 {
171 for(G4int i=0; i<numberOfVoxelAlongX*numbe << 140 for(G4int i=0; i<numberOfVoxelAlongX*numberOfVoxelAlongY*numberOfVoxelAlongZ; i++) hitTrack[i] = 0;
172 } 141 }
173 << 142 // Return Hit status
174 // Return Hit status <<
175 G4int* HadrontherapyMatrix::GetHitTrack(G4int 143 G4int* HadrontherapyMatrix::GetHitTrack(G4int i, G4int j, G4int k)
176 { 144 {
177 return &(hitTrack[Index(i,j,k)]); << 145 return &(hitTrack[Index(i,j,k)]);
178 } 146 }
179 <<
180 ////////////////////////////////////////////// 147 /////////////////////////////////////////////////////////////////////////////
181 // Dose methods... 148 // Dose methods...
182 // Fill DOSE/fluence matrix for secondary part << 149 // Fill DOSE/fluence matrix for secondary particles:
183 // If fluence parameter is true (default value << 150 // If fluence parameter is true (default value is FALSE) then fluence at voxel (i, j, k) is increased.
184 // The energyDeposit parameter fill the dose m << 151 // The energyDeposit parameter fill the dose matrix for voxel (i,j,k)
185 ////////////////////////////////////////////// 152 /////////////////////////////////////////////////////////////////////////////
>> 153
186 G4bool HadrontherapyMatrix::Fill(G4int trackID 154 G4bool HadrontherapyMatrix::Fill(G4int trackID,
187 G4ParticleDef << 155 G4ParticleDefinition* particleDef,
188 G4int i, G4in << 156 G4int i, G4int j, G4int k,
189 G4double ener << 157 G4double energyDeposit,
190 G4bool fluenc << 158 G4bool fluence)
191 { 159 {
192 <<
193 if ( (energyDeposit <=0. && !fluence) || ! 160 if ( (energyDeposit <=0. && !fluence) || !secondary) return false;
194 << 161 // Get Particle Data Group particle ID
195 // Get Particle Data Group particle ID <<
196 G4int PDGencoding = particleDef -> GetPDGE 162 G4int PDGencoding = particleDef -> GetPDGEncoding();
197 PDGencoding -= PDGencoding%10; 163 PDGencoding -= PDGencoding%10;
198 << 164
199 // Search for already allocated data... 165 // Search for already allocated data...
200 for (size_t l=0; l < ionStore.size(); l++) 166 for (size_t l=0; l < ionStore.size(); l++)
201 { 167 {
202 if (ionStore[l].PDGencoding == PDGenco << 168 if (ionStore[l].PDGencoding == PDGencoding )
203 { // Is it a primary or a secondary << 169 { // Is it a primary or a secondary particle?
204 << 170 if ( trackID ==1 && ionStore[l].isPrimary || trackID !=1 && !ionStore[l].isPrimary)
205 if ( (trackID ==1 && ionStore[l].i << 171 {
206 { << 172 if (energyDeposit > 0.) ionStore[l].dose[Index(i, j, k)] += energyDeposit/massOfVoxel;
207 if (energyDeposit > 0.) << 173
208 << 174 // Fill a matrix per each ion with the fluence
209 ionStore[l].dose[Index(i, << 175 if (fluence) ionStore[l].fluence[Index(i, j, k)]++;
210 << 176 return true;
211 // Fill a matrix per each ion << 177 }
212 << 178 }
213 if (fluence) ionStore[l].fluen <<
214 return true; <<
215 } <<
216 } <<
217 } 179 }
>> 180
218 G4int Z = particleDef-> GetAtomicNumber(); 181 G4int Z = particleDef-> GetAtomicNumber();
219 G4int A = particleDef-> GetAtomicMass(); 182 G4int A = particleDef-> GetAtomicMass();
220 G4String fullName = particleDef -> GetPart <<
221 G4String name = fullName.substr (0, fullNa <<
222 183
223 // Let's put a new particle in our store.. << 184 G4String fullName = particleDef -> GetParticleName();
224 ion newIon = << 185 G4String name = fullName.substr (0, fullName.find("[") ); // cut excitation energy
>> 186 // Let's put a new particle in our store...
>> 187 ion newIon =
225 { 188 {
226 (trackID == 1) ? true:false, << 189 (trackID == 1) ? true:false,
227 PDGencoding, << 190 PDGencoding,
228 name, << 191 name,
229 name.length(), << 192 name.length(),
230 Z, << 193 Z,
231 A, << 194 A,
232 new G4double[numberOfVoxelAlongX * num << 195 new G4double[numberOfVoxelAlongX * numberOfVoxelAlongY * numberOfVoxelAlongZ],
233 new unsigned int[numberOfVoxelAlongX * << 196 new unsigned int[numberOfVoxelAlongX * numberOfVoxelAlongY * numberOfVoxelAlongZ]
234 }; << 197 };
235 << 198 // Initialize data
236 <<
237 // Initialize data <<
238 if (newIon.dose && newIon.fluence) 199 if (newIon.dose && newIon.fluence)
239 { 200 {
240 for(G4int q=0; q<numberOfVoxelAlongX*n << 201 for(G4int m=0; m<numberOfVoxelAlongX*numberOfVoxelAlongY*numberOfVoxelAlongZ; m++)
241 { << 202 {
242 newIon.dose[q] = 0.; << 203 newIon.dose[m] = 0.;
243 newIon.fluence[q] = 0; << 204 newIon.fluence[m] = 0;
244 } << 205 }
245 << 206 if (energyDeposit > 0.) newIon.dose[Index(i, j, k)] += energyDeposit/massOfVoxel;
246 if (energyDeposit > 0.) newIon.dose[In << 207 if (fluence) newIon.fluence[Index(i, j, k)]++;
247 if (fluence) newIon.fluence[Index(i, j << 208
248 << 209 ionStore.push_back(newIon);
249 ionStore.push_back(newIon); << 210
250 return true; << 211 // TODO Put some verbosity check
>> 212 /*
>> 213 G4cout << "Memory space to store the DOSE/FLUENCE into " <<
>> 214 numberOfVoxelAlongX*numberOfVoxelAlongY*numberOfVoxelAlongZ <<
>> 215 " voxels has been allocated for the nuclide " << newIon.name <<
>> 216 " (Z = " << Z << ", A = " << A << ")" << G4endl ;
>> 217 */
>> 218 return true;
251 } 219 }
252 <<
253 else // XXX Out of memory! XXX 220 else // XXX Out of memory! XXX
254 <<
255 { 221 {
256 return false; << 222 return false;
257 } 223 }
>> 224
258 } 225 }
259 << 226
260 ////////////////////////////////////////////// << 227 /////////////////////////////////////////////////////////////////////////////
261 ////////////////////////////////////////////// << 228 /////////////////////////////////////////////////////////////////////////////
262 // Methods to store data to filenames... << 229 // Methods to store data to filenames...
263 ////////////////////////////////////////////// << 230 ////////////////////////////////////////////////////////////////////////////
264 ////////////////////////////////////////////// << 231 ////////////////////////////////////////////////////////////////////////////
265 // << 232 //
266 // General method to store matrix data to file << 233 // General method to store matrix data to filename
267 void HadrontherapyMatrix::StoreMatrix(G4String 234 void HadrontherapyMatrix::StoreMatrix(G4String file, void* data, size_t psize)
268 { 235 {
269 if (data) 236 if (data)
270 { 237 {
271 ofs.open(file, std::ios::out); << 238 ofs.open(file, std::ios::out);
272 if (ofs.is_open()) << 239 if (ofs.is_open())
273 { << 240 {
274 for(G4int i = 0; i < numberOfVoxel << 241 for(G4int i = 0; i < numberOfVoxelAlongX; i++)
275 for(G4int j = 0; j < numberOfV << 242 for(G4int j = 0; j < numberOfVoxelAlongY; j++)
276 for(G4int k = 0; k < numbe << 243 for(G4int k = 0; k < numberOfVoxelAlongZ; k++)
277 { << 244 {
278 G4int n = Index(i, j, << 245 G4int n = Index(i, j, k);
279 << 246 // Check for data type: u_int, G4double, XXX
280 if (psize == sizeof(un << 247 if (psize == sizeof(unsigned int))
281 { << 248 {
282 unsigned int* pdat << 249 unsigned int* pdata = (unsigned int*)data;
283 << 250 if (pdata[n]) ofs << i << '\t' << j << '\t' <<
284 if (pdata[n]) << 251 k << '\t' << pdata[n] << G4endl;
285 << 252 }
286 ofs << i << '\ << 253 else if (psize == sizeof(G4double))
287 } << 254 {
288 << 255 G4double* pdata = (G4double*)data;
289 else if (psize == size << 256 if (pdata[n]) ofs << i << '\t' << j << '\t' <<
290 << 257 k << '\t' << pdata[n] << G4endl;
291 { << 258 }
292 G4double* pdata = << 259 }
293 if (pdata[n]) ofs << 260 ofs.close();
294 } << 261 }
295 } <<
296 ofs.close(); <<
297 } <<
298 } 262 }
299 } 263 }
300 264
301 ////////////////////////////////////////////// << 265 // Store fluence per single ion in multiple files
302 // Store fluence per single ion in multiple fi <<
303 void HadrontherapyMatrix::StoreFluenceData() 266 void HadrontherapyMatrix::StoreFluenceData()
304 { 267 {
305 for (size_t i=0; i < ionStore.size(); i++) 268 for (size_t i=0; i < ionStore.size(); i++){
306 StoreMatrix(ionStore[i].name + "_Fluen << 269 StoreMatrix(ionStore[i].name + "_Fluence.out", ionStore[i].fluence, sizeof(unsigned int));
307 } 270 }
308 } 271 }
309 << 272 // Store dose per single ion in multiple files
310 ////////////////////////////////////////////// <<
311 // Store dose per single ion in multiple files <<
312 void HadrontherapyMatrix::StoreDoseData() 273 void HadrontherapyMatrix::StoreDoseData()
313 { 274 {
314 << 275
315 for (size_t i=0; i < ionStore.size(); i++) 276 for (size_t i=0; i < ionStore.size(); i++){
316 StoreMatrix(ionStore[i].name + "_Dose. << 277 StoreMatrix(ionStore[i].name + "_Dose.out", ionStore[i].dose, sizeof(G4double));
317 } 278 }
318 } 279 }
319 << 280 /////////////////////////////////////////////////////////////////////////
320 ////////////////////////////////////////////// << 281 // Store dose for all ions into a single file and into ntuples.
321 // Store dose into a single file << 282 // Please note that this function is called via messenger commands
322 // or in histograms. Please, note that this fu << 283 // defined in the HadrontherapyAnalysisFileMessenger.cc class file
323 // messenger commands <<
324 // defined in the HadrontherapyAnalysisFileMes <<
325 void HadrontherapyMatrix::StoreDoseFluenceAsci 284 void HadrontherapyMatrix::StoreDoseFluenceAscii(G4String file)
326 { 285 {
327 #define width 15L 286 #define width 15L
328 filename = (file=="") ? stdFile:file; 287 filename = (file=="") ? stdFile:file;
329 <<
330 // Sort like periodic table 288 // Sort like periodic table
331 <<
332 std::sort(ionStore.begin(), ionStore.end() 289 std::sort(ionStore.begin(), ionStore.end());
333 G4cout << "Dose is being written to " << f 290 G4cout << "Dose is being written to " << filename << G4endl;
334 ofs.open(filename, std::ios::out); 291 ofs.open(filename, std::ios::out);
335 <<
336 if (ofs.is_open()) 292 if (ofs.is_open())
337 { 293 {
338 // Write the voxels index and the list << 294 // Write the voxels index and the list of particles/ions
339 //ofs << std::setprecision(6) << std:: << 295 ofs << std::setprecision(6) << std::left <<
340 ofs << "i" << '\t' << "j" << '\t' << " << 296 "i\tj\tk\t";
341 G4cout << "i" << '\t' << "j" << '\t' < << 297 // Total dose
342 << 298 ofs << std::setw(width) << "Dose(MeV/g)";
343 // Total dose << 299 if (secondary)
344 ofs <<'\t' <<"Dose(Gy)"; << 300 {
345 //ofs << std::setw(width) << "Dose(Gy) << 301 for (size_t l=0; l < ionStore.size(); l++)
346 G4cout << '\t' << "Dose(Gy)"; << 302 {
347 << 303 G4String a = (ionStore[l].isPrimary) ? "_1":""; // is it a primary?
348 G4String fluence = "_f"; << 304 ofs << std::setw(width) << ionStore[l].name + a <<
349 if (secondary) << 305 std::setw(width) << ionStore[l].name + a;
350 { << 306 }
351 for (size_t l=0; l < ionStore.size << 307 ofs << G4endl;
352 { << 308
353 G4String a = (ionStore[l].isPr << 309 /*
354 << 310 * PDGencondig
355 // ofs << std::setw(width) << i << 311 */
356 // std::setw(width) << i << 312 /*
357 << 313 ofs << std::setprecision(6) << std::left <<
358 ofs << '\t' << ionStore[l].nam << 314 "0\t0\t0\t";
359 '\t' << ionStore[l]. << 315
360 << 316 // Total dose
361 G4cout << '\t' << ionStore[l]. << 317 ofs << std::setw(width) << '0';
362 '\t' << ionStore[l]. << 318 for (size_t l=0; l < ionStore.size(); l++)
363 << 319 {
364 } << 320 ofs << std::setw(width) << ionStore[l].PDGencoding <<
365 //ofs << G4endl; << 321 std::setw(width) << ionStore[l].PDGencoding;
366 } << 322 }
367 << 323 ofs << G4endl;
368 // Write data << 324 */
369 for(G4int i = 0; i < numberOfVoxelAlon << 325 }
370 for(G4int j = 0; j < numberOfVoxel << 326 // Write data
371 for(G4int k = 0; k < numberOfV << 327 for(G4int i = 0; i < numberOfVoxelAlongX; i++)
372 { << 328 for(G4int j = 0; j < numberOfVoxelAlongY; j++)
373 G4int n = Index(i, j, k); << 329 for(G4int k = 0; k < numberOfVoxelAlongZ; k++)
374 << 330 {
375 if (matrix[n]) << 331 G4int n = Index(i, j, k);
376 { << 332 // Write only not identically null data lines
377 ofs << G4endl; << 333 if (matrix[n])
378 ofs << i << '\t' << j << 334 {
379 << 335 ofs << G4endl;
380 // Total dose << 336 ofs << i << '\t' << j << '\t' << k << '\t';
381 //ofs << std::setw(wid << 337 // Total dose
382 ofs << (matrix[n]/mass << 338 ofs << std::setw(width) << matrix[n]/massOfVoxel/doseUnit;
383 << 339 if (secondary)
384 if (secondary) << 340 {
385 { << 341 for (size_t l=0; l < ionStore.size(); l++)
386 for (size_t l=0; l << 342 {
387 { << 343 // Fill ASCII file rows
388 // Fill ASCII << 344 ofs << std::setw(width) << ionStore[l].dose[n]/massOfVoxel/doseUnit <<
389 //ofs << std:: << 345 std::setw(width) << ionStore[l].fluence[n];
390 // std:: << 346 }
391 << 347 }
392 ofs << '\t' < << 348 }
393 '\t' << i << 349 }
394 } << 350 ofs.close();
395 } << 351 }
396 } << 352 }
397 } << 353 /////////////////////////////////////////////////////////////////////////////
398 ofs.close(); << 354
399 } << 355 #ifdef G4ANALYSIS_USE_ROOT
400 } << 356 void HadrontherapyMatrix::StoreDoseFluenceRoot()
401 ////////////////////////////////////////////// <<
402 void HadrontherapyMatrix::Fill(G4int i, G4int <<
403 G4double energy <<
404 { 357 {
405 if (matrix) << 358 HadrontherapyAnalysisManager* analysis = HadrontherapyAnalysisManager::GetInstance();
406 matrix[Index(i,j,k)] += energyDeposit; << 359 if (analysis -> IsTheTFile())
>> 360 {
>> 361 for(G4int i = 0; i < numberOfVoxelAlongX; i++)
>> 362 for(G4int j = 0; j < numberOfVoxelAlongY; j++)
>> 363 for(G4int k = 0; k < numberOfVoxelAlongZ; k++)
>> 364 {
>> 365 G4int n = Index(i, j, k);
>> 366 for (size_t l=0; l < ionStore.size(); l++)
>> 367
>> 368 {
>> 369 // Do the same work for .root file: fill dose/fluence ntuple
>> 370 analysis -> FillVoxelFragmentTuple( i, j, k,
>> 371 ionStore[l].A,
>> 372 ionStore[l].Z,
>> 373 ionStore[l].dose[n]/massOfVoxel/doseUnit,
>> 374 ionStore[l].fluence[n] );
407 375
408 // Store the energy deposit in the matrix <<
409 // to the phantom voxel <<
410 } <<
411 376
>> 377 }
>> 378 }
>> 379 }
>> 380 }
>> 381 #endif
412 382
>> 383 void HadrontherapyMatrix::Fill(G4int i, G4int j, G4int k,
>> 384 G4double energyDeposit)
>> 385 {
>> 386 if (matrix)
>> 387 matrix[Index(i,j,k)] += energyDeposit;
>> 388
>> 389 // Store the energy deposit in the matrix element corresponding
>> 390 // to the phantom voxel
>> 391 }
>> 392 void HadrontherapyMatrix::TotalEnergyDeposit()
>> 393 {
>> 394 // Convert energy deposited to dose.
>> 395 // Store the information of the matrix in a ntuple and in
>> 396 // a 1D Histogram
413 397
>> 398 HadrontherapyAnalysisManager* analysis = HadrontherapyAnalysisManager::GetInstance();
>> 399 if (matrix)
>> 400 {
>> 401 for(G4int i = 0; i < numberOfVoxelAlongX; i++)
>> 402 for(G4int j = 0; j < numberOfVoxelAlongY; j++)
>> 403 for(G4int k = 0; k < numberOfVoxelAlongZ; k++)
>> 404 {
>> 405 G4int n = Index(i,j,k);
>> 406 #ifdef G4ANALYSIS_USE_ROOT
>> 407 if (analysis -> IsTheTFile() )
>> 408 {
>> 409 analysis -> FillEnergyDeposit(i, j, k, matrix[n]/massOfVoxel/doseUnit);
>> 410 analysis -> BraggPeak(i, matrix[n]/massOfVoxel/doseUnit);
>> 411 }
>> 412 #endif
>> 413 }
>> 414 }
>> 415 }
414 416
415 417