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25 // 25 //
26 // Hadrontherapy advanced example for Geant4 26 // Hadrontherapy advanced example for Geant4
27 // See more at: https://twiki.cern.ch/twiki/bi 27 // See more at: https://twiki.cern.ch/twiki/bin/view/Geant4/AdvancedExamplesHadrontherapy
28 28
29 #include "HadrontherapyMagneticField3D.hh" 29 #include "HadrontherapyMagneticField3D.hh"
30 #include "G4SystemOfUnits.hh" 30 #include "G4SystemOfUnits.hh"
31 #include "G4AutoLock.hh" 31 #include "G4AutoLock.hh"
32 32
33 namespace{ G4Mutex MyHadrontherapyLock=G4MUTE 33 namespace{ G4Mutex MyHadrontherapyLock=G4MUTEX_INITIALIZER; }
34 34
35 using namespace std; <<
36 <<
37 HadrontherapyMagneticField3D::HadrontherapyMag 35 HadrontherapyMagneticField3D::HadrontherapyMagneticField3D( const char* filename, double xOffset )
38 :fXoffset(xOffset),invertX(false),invertY(fa 36 :fXoffset(xOffset),invertX(false),invertY(false),invertZ(false)
39 { 37 {
40 //The format file is: X Y Z Ex Ey Ez 38 //The format file is: X Y Z Ex Ey Ez
41 39
42 double lenUnit= meter; 40 double lenUnit= meter;
43 double fieldUnit= tesla; 41 double fieldUnit= tesla;
44 G4cout << "\n------------------------------- 42 G4cout << "\n-----------------------------------------------------------"
45 << "\n Magnetic field" 43 << "\n Magnetic field"
46 << "\n------------------------------------- 44 << "\n-----------------------------------------------------------";
47 45
48 46
49 G4cout << "\n ---> " "Reading the field grid << 47 G4cout << "\n ---> " "Reading the field grid from " << filename << " ... " << endl;
50 G4AutoLock lock(&MyHadrontherapyLock); 48 G4AutoLock lock(&MyHadrontherapyLock);
51 49
52 ifstream file( filename ); // Open the file 50 ifstream file( filename ); // Open the file for reading.
53 51
54 // Ignore first blank line 52 // Ignore first blank line
55 char buffer[256]; 53 char buffer[256];
56 file.getline(buffer,256); 54 file.getline(buffer,256);
57 55
58 // Read table dimensions 56 // Read table dimensions
59 file >> nx >> ny >> nz; // Note dodgy order 57 file >> nx >> ny >> nz; // Note dodgy order
60 58
61 G4cout << " [ Number of values x,y,z: " 59 G4cout << " [ Number of values x,y,z: "
62 << nx << " " << ny << " " << nz << " ] " 60 << nx << " " << ny << " " << nz << " ] "
63 << G4endl; << 61 << endl;
64 62
65 // Set up storage space for table 63 // Set up storage space for table
66 xField.resize( nx ); 64 xField.resize( nx );
67 yField.resize( nx ); 65 yField.resize( nx );
68 zField.resize( nx ); 66 zField.resize( nx );
69 int ix, iy, iz; 67 int ix, iy, iz;
70 for (ix=0; ix<nx; ix++) { 68 for (ix=0; ix<nx; ix++) {
71 xField[ix].resize(ny); 69 xField[ix].resize(ny);
72 yField[ix].resize(ny); 70 yField[ix].resize(ny);
73 zField[ix].resize(ny); 71 zField[ix].resize(ny);
74 for (iy=0; iy<ny; iy++) { 72 for (iy=0; iy<ny; iy++) {
75 xField[ix][iy].resize(nz); 73 xField[ix][iy].resize(nz);
76 yField[ix][iy].resize(nz); 74 yField[ix][iy].resize(nz);
77 zField[ix][iy].resize(nz); 75 zField[ix][iy].resize(nz);
78 } 76 }
79 } 77 }
80 78
81 // Read in the data 79 // Read in the data
82 G4double xval=0.; 80 G4double xval=0.;
83 G4double yval=0.; 81 G4double yval=0.;
84 G4double zval=0.; 82 G4double zval=0.;
85 G4double bx=0.; 83 G4double bx=0.;
86 G4double by=0.; 84 G4double by=0.;
87 G4double bz=0.; 85 G4double bz=0.;
88 for (ix=0; ix<nx; ix++) { 86 for (ix=0; ix<nx; ix++) {
89 for (iy=0; iy<ny; iy++) { 87 for (iy=0; iy<ny; iy++) {
90 for (iz=0; iz<nz; iz++) { 88 for (iz=0; iz<nz; iz++) {
91 file >> xval >> yval >> zval >> bx >> 89 file >> xval >> yval >> zval >> bx >> by >> bz ;
92 if ( ix==0 && iy==0 && iz==0 ) { 90 if ( ix==0 && iy==0 && iz==0 ) {
93 minx = xval * lenUnit; 91 minx = xval * lenUnit;
94 miny = yval * lenUnit; 92 miny = yval * lenUnit;
95 minz = zval * lenUnit; 93 minz = zval * lenUnit;
96 } 94 }
97 xField[ix][iy][iz] = bx * fieldUnit; 95 xField[ix][iy][iz] = bx * fieldUnit;
98 yField[ix][iy][iz] = by * fieldUnit; 96 yField[ix][iy][iz] = by * fieldUnit;
99 zField[ix][iy][iz] = bz * fieldUnit; 97 zField[ix][iy][iz] = bz * fieldUnit;
100 } 98 }
101 } 99 }
102 } 100 }
103 file.close(); 101 file.close();
104 102
105 lock.unlock(); 103 lock.unlock();
106 104
107 maxx = xval * lenUnit; 105 maxx = xval * lenUnit;
108 maxy = yval * lenUnit; 106 maxy = yval * lenUnit;
109 maxz = zval * lenUnit; 107 maxz = zval * lenUnit;
110 108
111 G4cout << "\n ---> ... done reading " << G4e << 109 G4cout << "\n ---> ... done reading " << endl;
112 110
113 // G4cout << " Read values of field from fil << 111 // G4cout << " Read values of field from file " << filename << endl;
114 G4cout << " ---> assumed the order: x, y, z 112 G4cout << " ---> assumed the order: x, y, z, Bx, By, Bz "
115 << "\n ---> Min values x,y,z: " 113 << "\n ---> Min values x,y,z: "
116 << minx/cm << " " << miny/cm << " " << minz 114 << minx/cm << " " << miny/cm << " " << minz/cm << " cm "
117 << "\n ---> Max values x,y,z: " 115 << "\n ---> Max values x,y,z: "
118 << maxx/cm << " " << maxy/cm << " " << maxz 116 << maxx/cm << " " << maxy/cm << " " << maxz/cm << " cm "
119 << "\n ---> The field will be offset by " < << 117 << "\n ---> The field will be offset by " << xOffset/cm << " cm " << endl;
120 118
121 // Should really check that the limits are n 119 // Should really check that the limits are not the wrong way around.
122 if (maxx < minx) {swap(maxx,minx); invertX = 120 if (maxx < minx) {swap(maxx,minx); invertX = true;}
123 if (maxy < miny) {swap(maxy,miny); invertY = 121 if (maxy < miny) {swap(maxy,miny); invertY = true;}
124 if (maxz < minz) {swap(maxz,minz); invertZ = 122 if (maxz < minz) {swap(maxz,minz); invertZ = true;}
125 G4cout << "\nAfter reordering if neccesary" 123 G4cout << "\nAfter reordering if neccesary"
126 << "\n ---> Min values x,y,z: " 124 << "\n ---> Min values x,y,z: "
127 << minx/cm << " " << miny/cm << " " << minz 125 << minx/cm << " " << miny/cm << " " << minz/cm << " cm "
128 << " \n ---> Max values x,y,z: " 126 << " \n ---> Max values x,y,z: "
129 << maxx/cm << " " << maxy/cm << " " << maxz 127 << maxx/cm << " " << maxy/cm << " " << maxz/cm << " cm ";
130 128
131 dx = maxx - minx; 129 dx = maxx - minx;
132 dy = maxy - miny; 130 dy = maxy - miny;
133 dz = maxz - minz; 131 dz = maxz - minz;
134 G4cout << "\n ---> Dif values x,y,z (range): 132 G4cout << "\n ---> Dif values x,y,z (range): "
135 << dx/cm << " " << dy/cm << " " << dz/cm << 133 << dx/cm << " " << dy/cm << " " << dz/cm << " cm in z "
136 << "\n------------------------------------- << 134 << "\n-----------------------------------------------------------" << endl;
137 } 135 }
138 136
139 void HadrontherapyMagneticField3D::GetFieldVal 137 void HadrontherapyMagneticField3D::GetFieldValue(const double point[4],
140 double *Bfield ) const 138 double *Bfield ) const
141 { 139 {
142 double x = point[0]+ fXoffset; 140 double x = point[0]+ fXoffset;
143 double y = point[1]; 141 double y = point[1];
144 double z = point[2]; 142 double z = point[2];
145 143
146 // Position of given point within region, 144 // Position of given point within region, normalized to the range
147 // [0,1] 145 // [0,1]
148 double xfraction = (x - minx) / dx; 146 double xfraction = (x - minx) / dx;
149 double yfraction = (y - miny) / dy; 147 double yfraction = (y - miny) / dy;
150 double zfraction = (z - minz) / dz; 148 double zfraction = (z - minz) / dz;
151 149
152 if (invertX) { xfraction = 1 - xfraction;} 150 if (invertX) { xfraction = 1 - xfraction;}
153 if (invertY) { yfraction = 1 - yfraction;} 151 if (invertY) { yfraction = 1 - yfraction;}
154 if (invertZ) { zfraction = 1 - zfraction;} 152 if (invertZ) { zfraction = 1 - zfraction;}
155 153
156 // Need addresses of these to pass to modf 154 // Need addresses of these to pass to modf below.
157 // modf uses its second argument as an OUT 155 // modf uses its second argument as an OUTPUT argument.
158 double xdindex, ydindex, zdindex; 156 double xdindex, ydindex, zdindex;
159 157
160 // Position of the point within the cuboid 158 // Position of the point within the cuboid defined by the
161 // nearest surrounding tabulated points 159 // nearest surrounding tabulated points
162 double xlocal = ( std::modf(xfraction*(nx- 160 double xlocal = ( std::modf(xfraction*(nx-1), &xdindex));
163 double ylocal = ( std::modf(yfraction*(ny- 161 double ylocal = ( std::modf(yfraction*(ny-1), &ydindex));
164 double zlocal = ( std::modf(zfraction*(nz- 162 double zlocal = ( std::modf(zfraction*(nz-1), &zdindex));
165 163
166 // The indices of the nearest tabulated po 164 // The indices of the nearest tabulated point whose coordinates
167 // are all less than those of the given po 165 // are all less than those of the given point
168 int xindex = static_cast<int>(std::floor(x 166 int xindex = static_cast<int>(std::floor(xdindex));
169 int yindex = static_cast<int>(std::floor(y 167 int yindex = static_cast<int>(std::floor(ydindex));
170 int zindex = static_cast<int>(std::floor(z 168 int zindex = static_cast<int>(std::floor(zdindex));
171 169
172 // Check that the point is within the de 170 // Check that the point is within the defined region
173 if ((xindex < 0) || (xindex >= nx - 1) || 171 if ((xindex < 0) || (xindex >= nx - 1) ||
174 (yindex < 0) || (yindex >= ny - 1) || 172 (yindex < 0) || (yindex >= ny - 1) ||
175 (zindex < 0) || (zindex >= nz - 1)) 173 (zindex < 0) || (zindex >= nz - 1))
176 { 174 {
177 Bfield[0] = 0.0; 175 Bfield[0] = 0.0;
178 Bfield[1] = 0.0; 176 Bfield[1] = 0.0;
179 Bfield[2] = 0.0; 177 Bfield[2] = 0.0;
180 } 178 }
181 else 179 else
182 { 180 {
183 181
184 #ifdef DEBUG_INTERPOLATING_FIELD 182 #ifdef DEBUG_INTERPOLATING_FIELD
185 G4cout << "Local x,y,z: " << xlocal << << 183 G4cout << "Local x,y,z: " << xlocal << " " << ylocal << " " << zlocal << endl;
186 G4cout << "Index x,y,z: " << xindex << << 184 G4cout << "Index x,y,z: " << xindex << " " << yindex << " " << zindex << endl;
187 double valx0z0, mulx0z0, valx1z0, mulx 185 double valx0z0, mulx0z0, valx1z0, mulx1z0;
188 double valx0z1, mulx0z1, valx1z1, mulx 186 double valx0z1, mulx0z1, valx1z1, mulx1z1;
189 valx0z0= table[xindex ][0][zindex]; 187 valx0z0= table[xindex ][0][zindex]; mulx0z0= (1-xlocal) * (1-zlocal);
190 valx1z0= table[xindex+1][0][zindex]; 188 valx1z0= table[xindex+1][0][zindex]; mulx1z0= xlocal * (1-zlocal);
191 valx0z1= table[xindex ][0][zindex+1]; 189 valx0z1= table[xindex ][0][zindex+1]; mulx0z1= (1-xlocal) * zlocal;
192 valx1z1= table[xindex+1][0][zindex+1]; 190 valx1z1= table[xindex+1][0][zindex+1]; mulx1z1= xlocal * zlocal;
193 #endif 191 #endif
194 192
195 // Full 3-dimensional version 193 // Full 3-dimensional version
196 Bfield[0] = 194 Bfield[0] =
197 xField[xindex ][yindex ][zindex ] 195 xField[xindex ][yindex ][zindex ] * (1-xlocal) * (1-ylocal) * (1-zlocal) +
198 xField[xindex ][yindex ][zindex+1] 196 xField[xindex ][yindex ][zindex+1] * (1-xlocal) * (1-ylocal) * zlocal +
199 xField[xindex ][yindex+1][zindex ] 197 xField[xindex ][yindex+1][zindex ] * (1-xlocal) * ylocal * (1-zlocal) +
200 xField[xindex ][yindex+1][zindex+1] 198 xField[xindex ][yindex+1][zindex+1] * (1-xlocal) * ylocal * zlocal +
201 xField[xindex+1][yindex ][zindex ] 199 xField[xindex+1][yindex ][zindex ] * xlocal * (1-ylocal) * (1-zlocal) +
202 xField[xindex+1][yindex ][zindex+1] 200 xField[xindex+1][yindex ][zindex+1] * xlocal * (1-ylocal) * zlocal +
203 xField[xindex+1][yindex+1][zindex ] 201 xField[xindex+1][yindex+1][zindex ] * xlocal * ylocal * (1-zlocal) +
204 xField[xindex+1][yindex+1][zindex+1] 202 xField[xindex+1][yindex+1][zindex+1] * xlocal * ylocal * zlocal ;
205 203
206 Bfield[1] = 204 Bfield[1] =
207 yField[xindex ][yindex ][zindex ] 205 yField[xindex ][yindex ][zindex ] * (1-xlocal) * (1-ylocal) * (1-zlocal) +
208 yField[xindex ][yindex ][zindex+1] 206 yField[xindex ][yindex ][zindex+1] * (1-xlocal) * (1-ylocal) * zlocal +
209 yField[xindex ][yindex+1][zindex ] 207 yField[xindex ][yindex+1][zindex ] * (1-xlocal) * ylocal * (1-zlocal) +
210 yField[xindex ][yindex+1][zindex+1] 208 yField[xindex ][yindex+1][zindex+1] * (1-xlocal) * ylocal * zlocal +
211 yField[xindex+1][yindex ][zindex ] 209 yField[xindex+1][yindex ][zindex ] * xlocal * (1-ylocal) * (1-zlocal) +
212 yField[xindex+1][yindex ][zindex+1] 210 yField[xindex+1][yindex ][zindex+1] * xlocal * (1-ylocal) * zlocal +
213 yField[xindex+1][yindex+1][zindex ] 211 yField[xindex+1][yindex+1][zindex ] * xlocal * ylocal * (1-zlocal) +
214 yField[xindex+1][yindex+1][zindex+1] 212 yField[xindex+1][yindex+1][zindex+1] * xlocal * ylocal * zlocal ;
215 213
216 Bfield[2] = 214 Bfield[2] =
217 zField[xindex ][yindex ][zindex ] 215 zField[xindex ][yindex ][zindex ] * (1-xlocal) * (1-ylocal) * (1-zlocal) +
218 zField[xindex ][yindex ][zindex+1] 216 zField[xindex ][yindex ][zindex+1] * (1-xlocal) * (1-ylocal) * zlocal +
219 zField[xindex ][yindex+1][zindex ] 217 zField[xindex ][yindex+1][zindex ] * (1-xlocal) * ylocal * (1-zlocal) +
220 zField[xindex ][yindex+1][zindex+1] 218 zField[xindex ][yindex+1][zindex+1] * (1-xlocal) * ylocal * zlocal +
221 zField[xindex+1][yindex ][zindex ] 219 zField[xindex+1][yindex ][zindex ] * xlocal * (1-ylocal) * (1-zlocal) +
222 zField[xindex+1][yindex ][zindex+1] 220 zField[xindex+1][yindex ][zindex+1] * xlocal * (1-ylocal) * zlocal +
223 zField[xindex+1][yindex+1][zindex ] 221 zField[xindex+1][yindex+1][zindex ] * xlocal * ylocal * (1-zlocal) +
224 zField[xindex+1][yindex+1][zindex+1] 222 zField[xindex+1][yindex+1][zindex+1] * xlocal * ylocal * zlocal ;
225 } 223 }
226 224
227 //In order to obtain the output file with the 225 //In order to obtain the output file with the magnetic components read from a particle passing in the magnetic field
228 /* std::ofstream MagneticField("MagneticField 226 /* std::ofstream MagneticField("MagneticField.out", std::ios::app);
229 MagneticField<< Bfield[0] << '\t' << " 227 MagneticField<< Bfield[0] << '\t' << " "
230 << Bfield[1] << '\t' << " " 228 << Bfield[1] << '\t' << " "
231 << Bfield[2] << '\t' << " " 229 << Bfield[2] << '\t' << " "
232 << point[0] << '\t' << " " 230 << point[0] << '\t' << " "
233 << point[1] << '\t' << " " 231 << point[1] << '\t' << " "
234 << point[2] << '\t' << " " 232 << point[2] << '\t' << " "
235 << std::endl;*/ << 233 << G4endl;*/
236 234
237 } 235 }
238 236