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Please see the license in the file LICENSE and URL above * 16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. * 17 // * 17 // * * 18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and * 19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. * 20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or * 21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its * 22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your * 23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. * 24 // ******************************************* 24 // ******************************************************************** 25 25 26 //GEANT4 - Depth-of-Interaction enabled Positr 26 //GEANT4 - Depth-of-Interaction enabled Positron emission tomography (PET) advanced example 27 27 28 //Authors and contributors 28 //Authors and contributors 29 29 30 // Author list to be updated, with names of co 30 // Author list to be updated, with names of co-authors and contributors from National Institute of Radiological Sciences (NIRS) 31 31 32 // Abdella M. Ahmed (1, 2), Andrew Chacon (1, 32 // Abdella M. Ahmed (1, 2), Andrew Chacon (1, 2), Harley Rutherford (1, 2), 33 // Hideaki Tashima (3), Go Akamatsu (3), Akram 33 // Hideaki Tashima (3), Go Akamatsu (3), Akram Mohammadi (3), Eiji Yoshida (3), Taiga Yamaya (3) 34 // Susanna Guatelli (2), and Mitra Safavi-Naei 34 // Susanna Guatelli (2), and Mitra Safavi-Naeini (1, 2) 35 35 36 // (1) Australian Nuclear Science and Technolo 36 // (1) Australian Nuclear Science and Technology Organisation, Australia 37 // (2) University of Wollongong, Australia 37 // (2) University of Wollongong, Australia 38 // (3) National Institute of Radiological Scie 38 // (3) National Institute of Radiological Sciences, Japan 39 39 40 40 41 #include "doiPETSteppingAction.hh" 41 #include "doiPETSteppingAction.hh" 42 #include "doiPETAnalysis.hh" 42 #include "doiPETAnalysis.hh" 43 #include "doiPETRun.hh" 43 #include "doiPETRun.hh" 44 #include "doiPETEventAction.hh" 44 #include "doiPETEventAction.hh" 45 45 46 #include "G4Step.hh" 46 #include "G4Step.hh" 47 #include "G4RunManager.hh" 47 #include "G4RunManager.hh" 48 #include "G4SteppingManager.hh" 48 #include "G4SteppingManager.hh" 49 49 50 #include "G4SystemOfUnits.hh" 50 #include "G4SystemOfUnits.hh" 51 #include "G4PhysicalConstants.hh" 51 #include "G4PhysicalConstants.hh" 52 #include <limits> 52 #include <limits> 53 53 54 ////////// Constructor /////////////////////// 54 ////////// Constructor ////////////////////////////////////////////// 55 /*doiPETSteppingAction::doiPETSteppingAction() 55 /*doiPETSteppingAction::doiPETSteppingAction() 56 {;}*/ 56 {;}*/ 57 doiPETSteppingAction::doiPETSteppingAction() 57 doiPETSteppingAction::doiPETSteppingAction() 58 : G4UserSteppingAction() 58 : G4UserSteppingAction() 59 { } 59 { } 60 60 61 ///////// Destructor ///////////////////////// 61 ///////// Destructor //////////////////////////////////////////////// 62 doiPETSteppingAction::~doiPETSteppingAction() 62 doiPETSteppingAction::~doiPETSteppingAction() 63 {;} 63 {;} 64 64 65 ///////// UserSteppingAction ///////////////// 65 ///////// UserSteppingAction /////////////////////////////////////// 66 void doiPETSteppingAction::UserSteppingAction( 66 void doiPETSteppingAction::UserSteppingAction(const G4Step* aStep) 67 { 67 { 68 doiPETRun* run = static_cast<doiPETRun*>(G4R 68 doiPETRun* run = static_cast<doiPETRun*>(G4RunManager::GetRunManager()->GetNonConstCurrentRun()); 69 69 70 G4Track* track = aStep->GetTrack(); 70 G4Track* track = aStep->GetTrack(); 71 G4String volumeName = aStep->GetPreStepPoint 71 G4String volumeName = aStep->GetPreStepPoint()->GetPhysicalVolume()->GetName(); 72 G4double edep = aStep->GetTotalEnergyDeposit 72 G4double edep = aStep->GetTotalEnergyDeposit(); 73 G4String processName =aStep->GetPostStepPoin 73 G4String processName =aStep->GetPostStepPoint()->GetProcessDefinedStep()->GetProcessName(); 74 G4String particleName = track->GetDynamicPar 74 G4String particleName = track->GetDynamicParticle()->GetDefinition()->GetParticleName(); 75 //G4int eventID = G4RunManager::GetRunManage 75 //G4int eventID = G4RunManager::GetRunManager()->GetCurrentEvent() -> GetEventID(); 76 G4ThreeVector pos = track->GetPosition(); 76 G4ThreeVector pos = track->GetPosition(); 77 77 78 78 79 //G4StepPoint* p2 = aStep->GetPostStepPoint( 79 //G4StepPoint* p2 = aStep->GetPostStepPoint(); 80 G4StepPoint* p1 = aStep->GetPreStepPoint(); 80 G4StepPoint* p1 = aStep->GetPreStepPoint(); 81 G4ThreeVector coord1 = p1->GetPosition(); 81 G4ThreeVector coord1 = p1->GetPosition(); 82 82 83 //The following is to get the local position 83 //The following is to get the local position of the interaction with respect to the crystal block volume 84 const G4AffineTransform transformation = p1 84 const G4AffineTransform transformation = p1->GetTouchable()-> GetHistory()->GetTransform(2); 85 G4ThreeVector localPosition = transformation 85 G4ThreeVector localPosition = transformation.TransformPoint(coord1); 86 86 87 G4int blockID; 87 G4int blockID; 88 G4int crystalID; 88 G4int crystalID; 89 89 90 G4int scatterIndex = 0;//For checking 90 G4int scatterIndex = 0;//For checking 91 91 92 //If an event is created in a cold region or 92 //If an event is created in a cold region or outside the physical volume, then it will be killed. 93 if((volumeName != "phantom_physicalV" || vol 93 if((volumeName != "phantom_physicalV" || volumeName == "coldRegion_physicalV") && particleName== "e+"){ 94 track->SetTrackStatus(fStopAndKill); 94 track->SetTrackStatus(fStopAndKill); 95 return; 95 return; 96 } 96 } 97 97 98 //Get the source position if the process nam 98 //Get the source position if the process name is annihilation 99 if(processName == "annihil" && volumeName==" 99 if(processName == "annihil" && volumeName=="phantom_physicalV"){ 100 doiPETAnalysis::GetInstance()->SetSourcePo 100 doiPETAnalysis::GetInstance()->SetSourcePosition(pos); 101 run->SetAnnihilationTime((track->GetGlobal 101 run->SetAnnihilationTime((track->GetGlobalTime())); 102 } 102 } 103 103 104 //get event ID 104 //get event ID 105 //doiPETAnalysis::GetInstance()->SetEventID 105 //doiPETAnalysis::GetInstance()->SetEventID (eventID); 106 106 107 //Get scatter information in the phantom by 107 //Get scatter information in the phantom by the annihilation photon before detected by the detector. Note that the scatter index is initialized to 0. 108 //If there energy deposition in the phantom 108 //If there energy deposition in the phantom by the photon, then there is scatter, the index is 1, and if not it is 0. 109 if(edep > 0 && particleName == "gamma" && v 109 if(edep > 0 && particleName == "gamma" && volumeName == "phantom_physicalV"){ 110 scatterIndex = 1; 110 scatterIndex = 1; 111 doiPETAnalysis::GetInstance()->SetScatterI 111 doiPETAnalysis::GetInstance()->SetScatterIndexInPhantom(scatterIndex); 112 } 112 } 113 113 114 /////////////////// Retrive (Extract) inf 114 /////////////////// Retrive (Extract) information in the crystal /////////////////////////// 115 if(edep>0. && volumeName=="Crystal_physicalV 115 if(edep>0. && volumeName=="Crystal_physicalV"){ 116 116 117 //get the copy number of the block 117 //get the copy number of the block 118 blockID = aStep->GetPreStepPoint()->GetTou 118 blockID = aStep->GetPreStepPoint()->GetTouchableHandle()->GetCopyNumber(2); 119 119 120 //get the crystal copy number 120 //get the crystal copy number 121 crystalID = aStep->GetPreStepPoint()->GetT 121 crystalID = aStep->GetPreStepPoint()->GetTouchableHandle()->GetCopyNumber(0); 122 122 123 //G4cout<<localPosition.x()<<" "<<localPos 123 //G4cout<<localPosition.x()<<" "<<localPosition.y()<<" "<<localPosition.z()<<G4endl; 124 124 125 //get event ID 125 //get event ID 126 //doiPETAnalysis::GetInstance()->GetEventI 126 //doiPETAnalysis::GetInstance()->GetEventID (eventID); 127 127 128 //define a pointer for extracting informat 128 //define a pointer for extracting information 129 InteractionInformation* ExtractIntInfo = n 129 InteractionInformation* ExtractIntInfo = new InteractionInformation(); 130 130 131 //get the energy deposition of each intera 131 //get the energy deposition of each interaction 132 ExtractIntInfo->SetEdep( edep ); 132 ExtractIntInfo->SetEdep( edep ); 133 133 134 134 135 //get the blockID 135 //get the blockID 136 ExtractIntInfo->SetBlockNo( blockID ); 136 ExtractIntInfo->SetBlockNo( blockID ); 137 137 138 138 139 //get the crystal ID 139 //get the crystal ID 140 ExtractIntInfo->SetCrystalNo( crystalID ); 140 ExtractIntInfo->SetCrystalNo( crystalID ); 141 141 142 142 143 //get local position interaction in the cr 143 //get local position interaction in the crystal 144 ExtractIntInfo->SetInteractionPositionInCr 144 ExtractIntInfo->SetInteractionPositionInCrystal(localPosition); 145 145 146 //get the global time of the interaction w 146 //get the global time of the interaction with the crystal 147 ExtractIntInfo->SetGlobalTime( track->GetG 147 ExtractIntInfo->SetGlobalTime( track->GetGlobalTime()); 148 148 149 //pass all the obtained information to the 149 //pass all the obtained information to the doiPETAnalysis class 150 //doiPETAnalysis::GetInstance()->GetIntrac 150 //doiPETAnalysis::GetInstance()->GetIntractionInfomation(ExtractIntInfo); 151 run->GetIntractionInfomation(ExtractIntInf 151 run->GetIntractionInfomation(ExtractIntInfo); 152 152 153 } 153 } 154 } 154 } 155 155