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Geant4/examples/advanced/dna/moleculardna/src/PrimaryGeneratorSourceGRASCSV.cc

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Diff markup

Differences between /examples/advanced/dna/moleculardna/src/PrimaryGeneratorSourceGRASCSV.cc (Version 11.3.0) and /examples/advanced/dna/moleculardna/src/PrimaryGeneratorSourceGRASCSV.cc (Version 10.0)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 //                                                
 27 /// \file PrimaryGeneratorSourceGRASCSV.cc        
 28 /// \brief Primary Generator source class impl    
 29 /// for Molecular DNA simulation                  
 30                                                   
 31 #include "PrimaryGeneratorSourceGRASCSV.hh"       
 32                                                   
 33 //....oooOO0OOooo........oooOO0OOooo........oo    
 34                                                   
 35 PrimaryGeneratorSourceGRASCSV::PrimaryGenerato    
 36 {                                                 
 37   // set a default buffer size                    
 38   fEndOfFile = false;                             
 39                                                   
 40   // open file                                    
 41   fInputFile.open(filename);                      
 42   if (fInputFile.is_open()) {                     
 43     G4cout << "*** Opening particle source fil    
 44     // find the starting particle source box      
 45     G4String line = "";                           
 46     G4int totalevents = 0;                        
 47     while (std::getline(fInputFile, line)) {      
 48       if (line.find("TOTAL_EVENTS") != std::st    
 49         // Create a stringstream of the curren    
 50         std::stringstream ss(line);               
 51         G4String tmp = "";                        
 52         ss >> tmp >> tmp >> totalevents;          
 53       }                                           
 54       if (line.find                               
 55           ("TWO-STAGE PARTICLE PHASE SPACE OUT    
 56           != std::string::npos)                   
 57       {                                           
 58         for (G4int i = 0; i < 18; i++) {          
 59           std::getline(fInputFile, line);         
 60           // Print the header information         
 61           G4cout << line << G4endl;               
 62         }                                         
 63         break;                                    
 64       }                                           
 65     }                                             
 66     // set the number of particles                
 67     fnParticles = totalevents;                    
 68   }                                               
 69   else {                                          
 70     G4cout << "*** Warning: can't open particl    
 71   }                                               
 72 }                                                 
 73                                                   
 74 //....oooOO0OOooo........oooOO0OOooo........oo    
 75                                                   
 76 PrimaryGeneratorSourceGRASCSV::~PrimaryGenerat    
 77 {                                                 
 78   // close file and clear structures              
 79   if (fInputFile.is_open()) {                     
 80     fInputFile.close();                           
 81   }                                               
 82   fPrimaryList.clear();                           
 83 }                                                 
 84                                                   
 85 //....oooOO0OOooo........oooOO0OOooo........oo    
 86                                                   
 87 G4double PrimaryGeneratorSourceGRASCSV::Recomp    
 88 {                                                 
 89   // to be implemented                            
 90   // the variable in CSV has to be recomputed     
 91   return fnParticles;                             
 92 }                                                 
 93                                                   
 94 //....oooOO0OOooo........oooOO0OOooo........oo    
 95                                                   
 96 Primary* PrimaryGeneratorSourceGRASCSV::GetPri    
 97 {                                                 
 98   if (fInputFile.peek() == EOF || fEndOfFile =    
 99   // Read in primaries if the primary list is     
100   if (fPrimaryList.size() == 0) {                 
101     // Read 100 primaries at a time               
102     G4int num = fBufferSize;                      
103     if (num > fnParticles) {                      
104       num = fnParticles;                          
105     }                                             
106                                                   
107     for (G4int i = 0; i < num; i++) {             
108       if (fInputFile.peek() == EOF) {             
109         // End of file                            
110         fEndOfFile = true;                        
111         break;                                    
112       }                                           
113       G4String line = "";                         
114       std::getline(fInputFile, line);             
115       if (line.find                               
116           ("TWO-STAGE PARTICLE PHASE SPACE OUT    
117           != std::string::npos)                   
118       {                                           
119         const G4int lines = 18;                   
120         for (G4int j = 0; j < lines; j++) {       
121           std::getline(fInputFile, line);         
122         }                                         
123         i--;                                      
124         continue;                                 
125       }                                           
126       if (line.find("Block") != std::string::n    
127           || line.find("End") != std::string::    
128       {                                           
129         // End of Block, skip                     
130         i--;                                      
131         continue;                                 
132       }                                           
133       std::stringstream ss(line);                 
134       std::vector<G4String> tempVect;             
135       G4String tempString = "";                   
136       while (ss >> tempString)                    
137         tempVect.push_back(tempString);           
138                                                   
139       try {                                       
140         // Define position and momentum direct    
141         G4ThreeVector pos = G4ThreeVector(std:    
142                                           std:    
143                                           std:    
144         G4ThreeVector momDir = G4ThreeVector(s    
145                                              s    
146                                              s    
147         G4int PDGEncoding = std::stoi(tempVect    
148         G4double KE = 0;                          
149         KE = std::stod(tempVect.at(8));           
150                                                   
151         // Generate primary particle              
152         auto* primary = new Primary();            
153         primary->SetName(PDGEncoding);            
154         primary->SetPosition(pos);                
155         primary->SetMomentumDirection(momDir);    
156         primary->SetEnergy(KE);                   
157                                                   
158         // Populate the primaries list            
159         fPrimaryList.push_back(primary);          
160       }                                           
161       catch (const std::invalid_argument&) {      
162         G4cerr << "Phase Space reading error:     
163       }                                           
164       catch (const std::out_of_range&) {          
165         G4cerr << "Phase Space reading error:     
166       }                                           
167     }                                             
168   }                                               
169                                                   
170   // Get first element and delete it so it's n    
171   Primary* primary = nullptr;                     
172   if (fPrimaryList.size() > 0) {                  
173     primary = fPrimaryList.front();               
174     fPrimaryList.pop_front();                     
175   }                                               
176   return primary;                                 
177 }                                                 
178