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26 //
27 /// \file DNAHit.cc
28 /// \brief Hit class for a hit interacting wit
29
30 #include "DNAHit.hh"
31
32 #include <utility>
33
34 G4ThreadLocal G4Allocator<DNAHit>* MolecularDN
35
36 //....oooOO0OOooo........oooOO0OOooo........oo
37
38 DNAHit::DNAHit(const molecule& mol, G4int plac
39 G4int chain, G4int strand, //
40 int64_t bp, const G4ThreeVector
41 const G4ThreeVector& localpos,
42 const G4double& energy, const G
43 const G4MolecularConfiguration*
44 : fMoleculeEnum(mol),
45 fPlacementIdx(placement_idx),
46 fChainIdx(chain),
47 fStrandIdx(strand),
48 fBasePairIdx(bp),
49 fPosition(pos),
50 fLocalPosition(localpos),
51 fEnergy(energy),
52 fDistance(d),
53 fChromosome(chromo),
54 fRadical(radical)
55 {
56 // Computed quantities
57 if (fStrandIdx == 0) {
58 if ((fMoleculeEnum == SUGAR) || (fMolecule
59 fStrand1Rad = fRadical;
60 fStrand1Energy = fEnergy;
61 }
62 else if ((fMoleculeEnum == CYTOSINE) || (f
63 || (fMoleculeEnum == THYMINE))
64 {
65 fBase1Rad = fRadical;
66 fBP1Energy = fEnergy;
67 }
68 else {
69 G4Exception("DNAHit", "ERR_UNKNOWN_MOLEC
70 "Chemical Reaction with unkn
71 }
72 }
73 else if (fStrandIdx == 1) {
74 if ((fMoleculeEnum == SUGAR) || (fMolecule
75 fStrand2Rad = fRadical;
76 fStrand2Energy = fEnergy;
77 }
78 else if ((fMoleculeEnum == CYTOSINE) || (f
79 || (fMoleculeEnum == THYMINE))
80 {
81 fBase2Rad = fRadical;
82 fBP2Energy = fEnergy;
83 }
84 else {
85 G4Exception("DNAHit", "ERR_UNKNOWN_MOLEC
86 }
87 }
88 }
89
90 //....oooOO0OOooo........oooOO0OOooo........oo
91
92 // This method is used to combine the computed
93 // It keeps the settable parameters of the cur
94 // parameters come from both, letting the hit
95 // base pair.
96 void DNAHit::AddHit(const DNAHit& right)
97 {
98 this->fStrand1Energy += right.GetStrand1Ener
99 this->fStrand2Energy += right.GetStrand2Ener
100 this->fBP1Energy += right.GetBP1Energy();
101 this->fBP2Energy += right.GetBP2Energy();
102 if (right.GetStrand1Rad() != nullptr) {
103 this->fStrand1Rad = right.GetStrand1Rad();
104 }
105 if (right.GetBase1Rad() != nullptr) {
106 this->fBase1Rad = right.GetBase1Rad();
107 }
108 if (right.GetStrand2Rad() != nullptr) {
109 this->fStrand2Rad = right.GetStrand2Rad();
110 }
111 if (right.GetBase2Rad() != nullptr) {
112 this->fBase2Rad = right.GetBase2Rad();
113 }
114 }
115
116 DNAHit::DNAHit(const DNAHit& right)
117 {
118 this->SetPlacementIdx(right.GetPlacementIdx(
119 this->SetMolecule(right.GetMolecule());
120 this->SetChainIdx(right.GetChainIdx());
121 this->SetStrandIdx(right.GetStrandIdx());
122 this->SetBasePairIdx(right.GetBasePairIdx())
123 this->SetPosition(right.GetPosition());
124 this->SetLocalPosition(right.GetLocalPositio
125 this->SetEnergy(right.GetEnergy());
126 this->SetDistance(right.GetDistance());
127 this->SetChromosome(right.GetChromosome());
128 this->SetRadical(right.GetRadical());
129
130 // Computed Quantities, no setters.
131 this->fStrand1Energy = right.GetStrand1Energ
132 this->fStrand2Energy = right.GetStrand2Energ
133 this->fBP1Energy = right.GetBP1Energy();
134 this->fBP2Energy = right.GetBP2Energy();
135 this->fStrand1Rad = right.GetStrand1Rad();
136 this->fBase1Rad = right.GetBase1Rad();
137 this->fStrand2Rad = right.GetStrand2Rad();
138 this->fBase2Rad = right.GetBase2Rad();
139 }
140
141 //....oooOO0OOooo........oooOO0OOooo........oo
142
143 const DNAHit& DNAHit::operator=(const DNAHit&
144 {
145 this->SetMolecule(right.GetMolecule());
146 this->SetPlacementIdx(right.GetPlacementIdx(
147 this->SetChainIdx(right.GetChainIdx());
148 this->SetStrandIdx(right.GetStrandIdx());
149 this->SetBasePairIdx(right.GetBasePairIdx())
150 this->SetPosition(right.GetPosition());
151 this->SetLocalPosition(right.GetLocalPositio
152 this->SetEnergy(right.GetEnergy());
153 this->SetDistance(right.GetDistance());
154 this->SetChromosome(right.GetChromosome());
155 this->SetRadical(right.GetRadical());
156
157 this->fStrand1Energy = right.GetStrand1Energ
158 this->fStrand2Energy = right.GetStrand2Energ
159 this->fBP1Energy = right.GetBP1Energy();
160 this->fBP2Energy = right.GetBP2Energy();
161 this->fStrand1Rad = right.GetStrand1Rad();
162 this->fBase1Rad = right.GetBase1Rad();
163 this->fStrand2Rad = right.GetStrand2Rad();
164 this->fBase2Rad = right.GetBase2Rad();
165 return *this;
166 }
167
168 //....oooOO0OOooo........oooOO0OOooo........oo
169
170 G4int DNAHit::operator==(const DNAHit& right)
171 {
172 return (this == &right) ? 1 : 0;
173 }
174 //....oooOO0OOooo........oooOO0OOooo........oo
175