| Geant4 Cross Reference |
1 # Example molecularDNA History
2
3 See `CONTRIBUTING.rst` for details of **requir
4 which **must** added in reverse chronological
5 It must **not** be used as a substitute for wr
6
7 ----------------------------------------------
8
9 ## 2024-11-05 H. Tran (molecularDNA-V11-02-13)
10 - added missing plasmid analysis root macro fi
11
12 ## 2024-11-04 S. Incerti (molecularDNA-V11-02-
13 - updated README and .README
14
15 ## 2024-10-31 K. Chatzipapas (molecularDNA-V11
16 - Adding chromosomal geometry related files
17 human_cell_chromosome.mac
18 human_cell_chromosome.C
19 human_cell_chromosome.py
20 human_cell_chromosome.txt
21
22 ## 2024-10-22 Hoang Tran (molecularDNA-V11-02-
23 - Corrected README files for plasmid geometry.
24
25 ## 2024-10-17 Hoang Tran (molecularDNA-V11-02-
26 - Moved from extended example to advanced exam
27
28 ## 2024-10-07 Hoang Tran (molecularDNA-V11-02-
29 - Added plasmid geometry
30
31 ## 2024-10-03 Hoang Tran (molecularDNA-V11-02-
32 - Modified the molecule names of OH, HO2, O in
33 Each molecule configuration has a molecule d
34
35 ## 2024-10-02 S. Incerti (molecularDNA-V11-02-
36 - added more comments in ChromosomeMessenger f
37
38 ## 2024-09-16 S. Incerti (molecularDNA-V11-02-
39 - fixed coding conventions violations
40
41 ## 2024-09-06 S. Incerti (molecularDNA-V11-02-
42 - updated README
43
44 ## 2024-09-05 S. Incerti (molecularDNA-V11-02-
45 - commented Geant4 macros
46 - commented README
47
48 ## 2024-08-20 H. Tran (molecularDNA-V11-02-02)
49 - modification of TimeStepModel interface
50 - used the physico-chemistry builder
51 - edited README files
52
53 ## 2024-07-29 S. Incerti (molecularDNA-V11-02-
54 - Fixed bug in DNAGeometryMessenger
55
56 ## 2024-04-18 H. Tran (molecularDNA-V11-02-00)
57 - Updated /dnageom/interactionDirectRange to 2
58
59 ## 2023-11-09 H. Tran (molecularDNA-V11-01-08)
60 - Added info in .README.txt and README files
61
62 ## 2023-11-07 I. Hrivnacova (molecularDNA-V11-
63 - Fixed formatting in .README.txt
64
65 ## 2023-09-13 I. Hrivnacova (molecularDNA-V11-
66 - Removed unused public data member
67 PrimaryGeneratorSourceGRASCSV::nLineCounter
68
69 ## 2023-08-28 Hoang Tran (molecularDNA-V11-01-
70 - add the geometry files for HTB177 and MCF-7
71
72 ## 2023-05-31 Hoang Tran (molecularDNA-V11-01-
73 - restore the correction of the material bug
74
75 ## 2023-04-20 Ronny Stanzani (molecularDNA-V11
76 - Add the ability to read particles from a spa
77 - Overall code revision with clang-tidy
78
79 ## 2023-02-07 Hoang Tran (molecularDNA-V11-01-
80 - correct the material bug in moleculardna exa
81 - add /scheduler/endTime 1 us in ecoli.mac and
82
83 ## 2023-01-13 Ben Morgan (molecularDNA-V11-01-
84 - Migrate data download to CERN EOS area for e
85
86 ## 2022-12-12 Hoang Tran (molecularDNA-V11-01-
87 - update ecoli.mac file (Nathanael's parameter
88
89 ## 2022-11-15 Hoang Tran (molecularDNA-V11-00-
90 - correct ecoli.mac file
91
92 ## 2022-10-24 Konstantinos Chatzipapas (molecu
93 - Add repair-survival-models
94 - molecularDNArepair.py
95 - molecularDNAsurvival.py (beta)
96 - Update ecoli files (fix bug)
97 - Update vis.mac and cylinders.mac
98
99 ## 2022-09-20 Hoang Tran (molecularDNA-V11-00-
100 - Fixed the examples naming conventions violat
101 - reduce event number of ecoli.mac
102
103 ## 2022-08-30 Vladimir Ivanchenko (molecularDN
104 - ChemistryList - added forgotten header
105
106 ## 2022-08-27 Hoang Tran (molecularDNA-V11-00-
107 - Fix smart pointer warning in gcc 12.1.
108 - Fix typo in the human_cell.C.
109
110 ## 2022-07-12 Konstantinos Chatzipapas (molecu
111 - Fix ecoli.C minor bug on filename.
112
113 ## 2022-06-10 Sergio Losilla (molecularDNA-V11
114 - Added missing headers.
115
116 ## 2022-05-03 Konstantinos Chatzipapas (molecu
117 - add ecoli.C macro file
118 - add createSDD.py
119
120 ## 2022-04-14 Hoang Tran (molecularDNA-V11-00-
121 - correct a minor mistake in AnalysisManager
122 - Add Complexity Frequency in cylinder.C
123 - add human_cell.C macro file
124
125 ## 2022-02-27 Vladimir Ivanchenko (molecularDN
126 - PhysicsList - added DecayPhysics and Radioac
127 - ParallelWorldPhysics - minor clean-up
128 - molecular.cc - updated according to the rece
129 removed ifdef, removed RanecuEngine, use v
130 the interactive session only, use G4RunMan
131
132 ## 2022-02-17 Hoang Tran (molecularDNA-V11-00-
133 - modify Chemistry list
134 - timeout for the geometry data download
135 - the exception message in DNAGeometryMessenge
136
137 ## 2022-01-07 Hoang Tran (molecularDNA-V11-00-
138 - initial tag