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Geant4/examples/advanced/dna/dsbandrepair/src/UserMoleculeGun.cc

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Diff markup

Differences between /examples/advanced/dna/dsbandrepair/src/UserMoleculeGun.cc (Version 11.3.0) and /examples/advanced/dna/dsbandrepair/src/UserMoleculeGun.cc (Version 3.1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 //                                                
 27 /// \file UserMoleculeGun.cc                      
 28 /// \brief Implementation of the UserMoleculeG    
 29                                                   
 30 #include "UserMoleculeGun.hh"                     
 31 #include "UserMolecule.hh"                        
 32                                                   
 33 #include "G4MoleculeTable.hh"                     
 34 #include "G4SystemOfUnits.hh"                     
 35 #include "G4VITTrackHolder.hh"                    
 36 #include "G4H2O.hh"                               
 37 #include "G4Track.hh"                             
 38                                                   
 39 UserMoleculeShoot::UserMoleculeShoot() :          
 40 G4enable_shared_from_this<UserMoleculeShoot>()    
 41 {                                                 
 42     fMoleculeName = "";                           
 43     fTime = 0;                                    
 44     fNumber = 1;                                  
 45     fBoxSize = 0;                                 
 46     fCopyNumber = -1;                             
 47     fStrand = -1;                                 
 48 }                                                 
 49                                                   
 50 //....oooOO0OOooo........oooOO0OOooo........oo    
 51                                                   
 52 UserMoleculeShoot::~UserMoleculeShoot()           
 53 {                                                 
 54     if(fBoxSize) delete fBoxSize;                 
 55 }                                                 
 56                                                   
 57 //....oooOO0OOooo........oooOO0OOooo........oo    
 58                                                   
 59 template<>                                        
 60 void TUserMoleculeShoot<G4Track>::ShootAtRando    
 61 {                                                 
 62     G4ThreeVector positionInLocalCoordinate;      
 63                                                   
 64     for(int i = 0; i < fNumber; ++i)              
 65     {                                             
 66         RandomPosInBox(*fBoxSize, positionInLo    
 67         if(fStrand<=0)                            
 68         gun->BuildAndPushTrack(fMoleculeName,     
 69         fPosition + positionInLocalCoordinate,    
 70         fTime);                                   
 71     else                                          
 72         gun->BuildAndPushTrack(fMoleculeName,     
 73         fPosition + positionInLocalCoordinate,    
 74         fTime,fCopyNumber,fStrand);               
 75     }                                             
 76 }                                                 
 77                                                   
 78 //....oooOO0OOooo........oooOO0OOooo........oo    
 79                                                   
 80 template<>                                        
 81 void TUserMoleculeShoot<G4Track>::ShootAtFixed    
 82 {                                                 
 83     for(int i = 0; i < fNumber; ++i)              
 84     {                                             
 85         if(fStrand<=0)                            
 86         gun->BuildAndPushTrack(fMoleculeName,     
 87         else                                      
 88         gun->BuildAndPushTrack(fMoleculeName,f    
 89     }                                             
 90 }                                                 
 91                                                   
 92 //....oooOO0OOooo........oooOO0OOooo........oo    
 93                                                   
 94 template<>                                        
 95 void TUserMoleculeShoot<G4Track>::MyShoot(User    
 96 {                                                 
 97     if(fBoxSize) ShootAtRandomPosition(gun);      
 98     else ShootAtFixedPosition(gun);               
 99 }                                                 
100                                                   
101 //....oooOO0OOooo........oooOO0OOooo........oo    
102                                                   
103 void UserMoleculeGun::DefineTracks()              
104 {                                                 
105     for (size_t i = 0; i < fShoots.size(); i++    
106     {                                             
107         fShoots[i]->MyShoot(this);                
108     }                                             
109 }                                                 
110                                                   
111 //....oooOO0OOooo........oooOO0OOooo........oo    
112                                                   
113 void UserMoleculeGun::AddMolecule(const G4Stri    
114     const G4ThreeVector& position,                
115     G4double time,                                
116     G4int copyNumber,                             
117     G4int strand)                                 
118 {                                                 
119     G4shared_ptr<UserMoleculeShoot> shoot(new     
120     shoot->fMoleculeName = name;                  
121     shoot->fPosition = position;                  
122     shoot->fTime = time;                          
123     shoot->fCopyNumber = copyNumber;              
124     shoot->fStrand = strand;                      
125     fShoots.push_back(shoot);                     
126 }                                                 
127                                                   
128 //....oooOO0OOooo........oooOO0OOooo........oo    
129                                                   
130 void UserMoleculeGun::AddWaterMolecule(const G    
131     G4int trackId,                                
132     ElectronicModification elecModif,             
133     G4int electronicLevel)                        
134 {                                                 
135     UserMolecule * H2O = new UserMolecule (G4H    
136     switch (elecModif)                            
137     {                                             
138         case eDissociativeAttachment:             
139         H2O -> AddElectron(5,1);                  
140         break;                                    
141         case eExcitedMolecule :                   
142         H2O -> ExciteMolecule(electronicLevel)    
143         break;                                    
144         case eIonizedMolecule :                   
145         H2O -> IonizeMolecule(electronicLevel)    
146         break;                                    
147     }                                             
148                                                   
149     G4Track * H2OTrack = H2O->BuildTrack(1*pic    
150     H2OTrack->SetParentID(trackId);               
151     H2OTrack->SetTrackStatus(fStopButAlive);      
152     H2OTrack->SetKineticEnergy(0.);               
153     G4VITTrackHolder::Instance()->Push(H2OTrac    
154 }                                                 
155                                                   
156 //....oooOO0OOooo........oooOO0OOooo........oo    
157                                                   
158 void UserMoleculeGun::BuildAndPushTrack(const     
159     const G4ThreeVector& position,                
160     G4double time)                                
161 {                                                 
162     G4MolecularConfiguration* conf =              
163     G4MoleculeTable::Instance()->GetConfigurat    
164     assert(conf != 0);                            
165     UserMolecule* molecule = new UserMolecule(    
166     PushTrack(molecule->BuildTrack(time, posit    
167 }                                                 
168                                                   
169 //....oooOO0OOooo........oooOO0OOooo........oo    
170                                                   
171 void UserMoleculeGun::BuildAndPushTrack(const     
172     const G4ThreeVector& position,                
173     G4double time,                                
174     G4int copyNumber,                             
175     G4int strand)                                 
176 {                                                 
177     G4MoleculeDefinition* def = G4MoleculeTabl    
178     assert(def != 0);                             
179     UserMolecule* molecule = new UserMolecule(    
180     molecule->SetCopyNumber(copyNumber);          
181     molecule->SetStrand(strand);                  
182                                                   
183     PushTrack(molecule->BuildTrack(time, posit    
184 }                                                 
185                                                   
186 //....oooOO0OOooo........oooOO0OOooo........oo    
187