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Geant4/examples/advanced/dna/dsbandrepair/analysis/dnadamage/src/ClassifiedDamage.cc

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Diff markup

Differences between /examples/advanced/dna/dsbandrepair/analysis/dnadamage/src/ClassifiedDamage.cc (Version 11.3.0) and /examples/advanced/dna/dsbandrepair/analysis/dnadamage/src/ClassifiedDamage.cc (Version 11.1.1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 //                                                
 27 /// \file ClassifiedDamage.cc                     
 28 /// \brief Implementation of the ClassifiedDam    
 29                                                   
 30 #include "ClassifiedDamage.hh"                    
 31                                                   
 32 //....oooOO0OOooo........oooOO0OOooo........oo    
 33                                                   
 34 ClassifiedDamage::ClassifiedDamage()              
 35 {                                                 
 36   fType = fNA;                                    
 37   fDamage.clear();                                
 38   fBp_begin = 0;                                  
 39   fBp_end = 0;                                    
 40   fComplexity = -1;                               
 41   fIncludeBase = false;                           
 42 }                                                 
 43                                                   
 44 //....oooOO0OOooo........oooOO0OOooo........oo    
 45                                                   
 46 void ClassifiedDamage::AddDamage(Damage pDmg)     
 47 {                                                 
 48   fDamage.push_back(pDmg);                        
 49 }                                                 
 50                                                   
 51 //....oooOO0OOooo........oooOO0OOooo........oo    
 52                                                   
 53 void ClassifiedDamage::ComputeBp()                
 54 {                                                 
 55   fBp_begin = fDamage[0].GetCopyNb();             
 56   fBp_end = fDamage[fDamage.size()-1].GetCopyN    
 57                                                   
 58   fBp_barycenter=0;                               
 59   for(auto it=fDamage.begin();it!=fDamage.end(    
 60   {                                               
 61     fBp_barycenter+=it->GetCopyNb();              
 62   }                                               
 63   fBp_barycenter = fBp_barycenter/fDamage.size    
 64 }                                                 
 65                                                   
 66 //....oooOO0OOooo........oooOO0OOooo........oo    
 67                                                   
 68 void ClassifiedDamage::ComputePosition()          
 69 {                                                 
 70   // TODO                                         
 71 }                                                 
 72                                                   
 73 //....oooOO0OOooo........oooOO0OOooo........oo    
 74                                                   
 75 void ClassifiedDamage::ComputeComplexity()        
 76 {                                                 
 77   if(fDamage.size()==0)                           
 78   {                                               
 79     fComplexity = -1;                             
 80   }                                               
 81   else                                            
 82   {                                               
 83     fComplexity = -1;                             
 84     for(auto it=fDamage.begin();it!=fDamage.en    
 85     {                                             
 86       if((it->GetDamageType()==Damage::DamageT    
 87       {                                           
 88         fComplexity++;                            
 89       }                                           
 90       else                                        
 91       {                                           
 92         if(fIncludeBase)                          
 93         {                                         
 94           fComplexity++;                          
 95         }                                         
 96       }                                           
 97     }                                             
 98   }                                               
 99 }                                                 
100                                                   
101 //....oooOO0OOooo........oooOO0OOooo........oo    
102                                                   
103 void ClassifiedDamage::ComputeType()              
104 {                                                 
105   bool firstStrandTouched = false;                
106   bool secondStrandTouched = false;               
107                                                   
108   if(fDamage.size()==0)                           
109   {                                               
110     fType = fNA;                                  
111   }                                               
112   else                                            
113   {                                               
114     for(auto it=fDamage.begin();it!=fDamage.en    
115     {                                             
116       if((it->GetDamageType()==Damage::DamageT    
117       {                                           
118         int strand = it->GetStrand();             
119         if(strand == 1)                           
120         {                                         
121           firstStrandTouched = true;              
122         }                                         
123         if(strand == 2)                           
124         {                                         
125           secondStrandTouched = true;             
126         }                                         
127       }                                           
128                                                   
129       if (it->GetCause() == Damage::DamageCaus    
130         fIsThereDirectContribution = true;        
131       }                                           
132                                                   
133       if (it->GetCause() == Damage::DamageCaus    
134         fIsThereIndirectContribution = true;      
135       }                                           
136     }                                             
137                                                   
138     if(firstStrandTouched && secondStrandTouch    
139     {                                             
140       fType = fDSB;                               
141     }                                             
142     else                                          
143     {                                             
144       fType = fSSB;                               
145     }                                             
146   }                                               
147 }                                                 
148                                                   
149 //....oooOO0OOooo........oooOO0OOooo........oo    
150                                                   
151 void ClassifiedDamage::Reset()                    
152 {                                                 
153   fType = fNA;                                    
154   fDamage.clear();                                
155   fBp_begin = 0;                                  
156   fBp_end = 0;                                    
157   fComplexity = -1;                               
158 }                                                 
159