Geant4 Cross Reference

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Geant4/examples/advanced/STCyclotron/Plot.C

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Diff markup

Differences between /examples/advanced/STCyclotron/Plot.C (Version 11.3.0) and /examples/advanced/STCyclotron/Plot.C (Version 7.0)


  1 #include "TF1.h"                                    1 
  2 #include "TH2.h"                                  
  3 #include "TH2D.h"                                 
  4 #include "TH1.h"                                  
  5 #include "TMath.h"                                
  6 #include <string.h>                               
  7 #include "TGraph.h"                               
  8 #include <map>                                    
  9                                                   
 10 using namespace std;                              
 11                                                   
 12 void norm_th1_per_bin_width_per_primaries(TH1D    
 13 {                                                 
 14   int xbins;                                      
 15   double value,xbinwidth;                         
 16                                                   
 17   //Normalize histogram per bin width and per     
 18   xbins = histo->GetXaxis()->GetNbins();          
 19   for(int i=1; i<xbins;i++)                       
 20     {                                             
 21       xbinwidth = histo->GetBinWidth(i);          
 22       value = histo->GetBinContent(i);            
 23       value = value/xbinwidth/(total_primaries    
 24       histo->SetBinContent(i,value);              
 25                                                   
 26       //Setting error bin content                 
 27       value = histo->GetBinError(i);              
 28       value = value/xbinwidth/(total_primaries    
 29       histo->SetBinError(i,value);                
 30     }                                             
 31 }                                                 
 32                                                   
 33 void norm_th2_per_bin_width_per_primaries(TH2D    
 34 {                                                 
 35   int xbins,ybins;                                
 36   double value,xbinwidth,ybinwidth;               
 37                                                   
 38   //Normalize histogram per bin width and per     
 39   xbins = histo->GetXaxis()->GetNbins();          
 40   ybins = histo->GetYaxis()->GetNbins();          
 41   for(int i=1; i<xbins;i++)                       
 42     {                                             
 43       xbinwidth = histo->GetXaxis()->GetBinWid    
 44                                                   
 45       for(int j=1; j<ybins;j++)                   
 46   {                                               
 47     ybinwidth = histo->GetYaxis()->GetBinWidth    
 48                                                   
 49     value = histo->GetBinContent(i,j);            
 50     value = value/xbinwidth/ybinwidth/(total_p    
 51     histo->SetBinContent(i,j,value);              
 52                                                   
 53     //Setting error bin content                   
 54     value = histo->GetBinError(i,j);              
 55     value = value/xbinwidth/ybinwidth/(total_p    
 56     histo->SetBinError(i,j,value);                
 57   }                                               
 58     }                                             
 59 }                                                 
 60                                                   
 61                                                   
 62 void Plot(){                                      
 63                                                   
 64                                                   
 65   //PARAMETERS                                    
 66   double tMin = 0;                                
 67   double tMax = 30.;              //in hour(s)    
 68   double halfLifeLimit = 1./60.;   //in hour(s    
 69                                                   
 70   double tIrradiation;       //in hour(s)         
 71   double beamCurrent;        //in µA             
 72   int total_primaries;                            
 73                                                   
 74                                                   
 75                                                   
 76   //VARIABLES                                     
 77   string endLine;                                 
 78                                                   
 79   //Getting the parameters from the G4 output     
 80   ifstream G4output;                              
 81   G4output.open("Output_General.txt");            
 82   for(int i=0;i<6;i++)getline(G4output,endLine    
 83   G4output >> beamCurrent; getline(G4output,en    
 84   G4output >> tIrradiation; getline(G4output,e    
 85   for(int i=0;i<6;i++)getline(G4output,endLine    
 86   G4output >> total_primaries;                    
 87   G4output.close();                               
 88                                                   
 89   beamCurrent*=1e6; //<--- convert from A to     
 90                                                   
 91   /*                                              
 92   cout << "Irradiation time = " << tIrradiatio    
 93   cout << "Beam current = " << beamCurrent <<     
 94   cout << "Total primaries = " << total_primar    
 95   getchar();*/                                    
 96                                                   
 97                                                   
 98   system("rm -r Results");                        
 99   system("mkdir Results");                        
100   system("mkdir Results/IsotopesProduction");     
101   system("mkdir Results/ParticlesEnergySpectra    
102   system("mkdir Results/ParticlesEnergySpectra    
103   system("mkdir Results/ParticlesEnergySpectra    
104   system("mkdir Results/BeamData");               
105                                                   
106                                                   
107   ofstream results;                               
108   results.open("Results.txt");                    
109   results << "Parameters: " << endl;              
110   results << "Time of irradiation: " << tIrrad    
111   results << "Beam current: " << beamCurrent <    
112   results << "Total number of simulated primar    
113   results << "Please check they are the same a    
114                                                   
115   //Opening root file.                            
116                                                   
117   stringstream name_root_file;                    
118   name_root_file << "./SolidTargetCyclotron.ro    
119   TFile *f = new TFile(name_root_file.str().c_    
120                                                   
121   //------------------------------------------    
122   //       Energy Profile of the beam before/a    
123   //------------------------------------------    
124                                                   
125   TCanvas *BeamEnergyTarget = new TCanvas("Bea    
126                                                   
127   TH1D *energyProfileBeamTarget = (TH1D*)f->Ge    
128   energyProfileBeamTarget->GetXaxis()->SetTitl    
129   energyProfileBeamTarget->GetYaxis()->SetTitl    
130   energyProfileBeamTarget->SetTitle("Primary p    
131                                                   
132   energyProfileBeamTarget->GetXaxis()->SetMaxD    
133   energyProfileBeamTarget->GetYaxis()->SetMaxD    
134                                                   
135   //Normalize histogram per bin width and per     
136   norm_th1_per_bin_width_per_primaries(energyP    
137                                                   
138   energyProfileBeamTarget->Draw("H");             
139   BeamEnergyTarget->Print("./Results/BeamData/    
140                                                   
141                                                   
142                                                   
143   TCanvas *BeamEnergyOutTarget = new TCanvas("    
144                                                   
145   TH1D *energyProfileBeamOutTarget = (TH1D*)f-    
146   energyProfileBeamOutTarget->GetXaxis()->SetT    
147   energyProfileBeamOutTarget->GetYaxis()->SetT    
148   energyProfileBeamOutTarget->SetTitle("Primar    
149                                                   
150   energyProfileBeamOutTarget->GetXaxis()->SetM    
151   energyProfileBeamOutTarget->GetYaxis()->SetM    
152                                                   
153   //Normalize histogram per bin width and per     
154   norm_th1_per_bin_width_per_primaries(energyP    
155                                                   
156   energyProfileBeamOutTarget->Draw("H");          
157   BeamEnergyOutTarget->Print("./Results/BeamDa    
158                                                   
159                                                   
160                                                   
161   //------------------------------------------    
162   //        Energy Profile of the beam before/    
163   //------------------------------------------    
164                                                   
165   TCanvas *BeamEnergyFoil = new TCanvas("Beam     
166                                                   
167   TH1D *energyProfileBeamFoil = (TH1D*)f->Get(    
168   energyProfileBeamFoil->GetXaxis()->SetTitle(    
169   energyProfileBeamFoil->GetYaxis()->SetTitle(    
170   energyProfileBeamFoil->SetTitle("Primary par    
171                                                   
172   energyProfileBeamFoil->GetXaxis()->SetMaxDig    
173   energyProfileBeamFoil->GetYaxis()->SetMaxDig    
174                                                   
175   //Normalize histogram per bin width and per     
176   norm_th1_per_bin_width_per_primaries(energyP    
177                                                   
178   energyProfileBeamFoil->Draw("H");               
179   BeamEnergyFoil->Print("./Results/BeamData/Be    
180                                                   
181                                                   
182                                                   
183   TCanvas *BeamEnergyOutFoil = new TCanvas("Be    
184   TH1D *energyProfileBeamOutFoil = (TH1D*)f->G    
185   energyProfileBeamOutFoil->GetXaxis()->SetTit    
186   energyProfileBeamOutFoil->GetYaxis()->SetTit    
187   energyProfileBeamOutFoil->SetTitle("Primary     
188                                                   
189   energyProfileBeamOutFoil->GetXaxis()->SetMax    
190   energyProfileBeamOutFoil->GetYaxis()->SetMax    
191                                                   
192   //Normalize histogram per bin width and per     
193   norm_th1_per_bin_width_per_primaries(energyP    
194                                                   
195   energyProfileBeamOutFoil->Draw("H");            
196   BeamEnergyOutFoil->Print("./Results/BeamData    
197                                                   
198                                                   
199                                                   
200   //------------------------------------------    
201   //            Depth of isotope creation in t    
202   //------------------------------------------    
203                                                   
204   TCanvas *depthCreation = new TCanvas("DepthC    
205                                                   
206   TH1D *hDepthCreation = (TH1D*) f->Get("H14;1    
207   hDepthCreation->SetTitle("Depth of isotope c    
208   hDepthCreation->GetXaxis()->SetTitle("Depth     
209   hDepthCreation->GetYaxis()->SetTitle("N isot    
210                                                   
211   hDepthCreation->GetYaxis()->SetMaxDigits(3);    
212                                                   
213   //Normalize histogram per bin width and per     
214   norm_th1_per_bin_width_per_primaries(hDepthC    
215                                                   
216   hDepthCreation->SetMarkerStyle(4);              
217   hDepthCreation->SetMarkerSize(1);               
218   hDepthCreation->Draw("l");                      
219                                                   
220   depthCreation->Print("./Results/IsotopesProd    
221                                                   
222                                                   
223   //------------------------------------------    
224   //                        Energy spectrum       
225   //------------------------------------------    
226                                                   
227   //----------------->> PARTICLES EMITTED DUE     
228                                                   
229   //Positrons//                                   
230   TCanvas *PositronSpectrumBeam = new TCanvas(    
231   TH1D *hPositronSpectrumBeam = (TH1D*) f->Get    
232   if(hPositronSpectrumBeam->GetEntries()!=0)      
233     {                                             
234       hPositronSpectrumBeam->GetXaxis()->SetTi    
235       hPositronSpectrumBeam->GetYaxis()->SetTi    
236       //Normalize histogram per bin width and     
237       norm_th1_per_bin_width_per_primaries(hPo    
238       hPositronSpectrumBeam->GetYaxis()->SetMa    
239       hPositronSpectrumBeam->GetYaxis()->SetTi    
240       hPositronSpectrumBeam->Draw("H");           
241       PositronSpectrumBeam->SetLogy();            
242       PositronSpectrumBeam->Print("./Results/P    
243     }                                             
244                                                   
245  //Electrons//                                    
246   TCanvas *ElectronSpectrumBeam = new TCanvas(    
247   TH1D *hElectronSpectrumBeam = (TH1D*) f->Get    
248   if(hElectronSpectrumBeam->GetEntries() !=0)     
249     {                                             
250       hElectronSpectrumBeam->GetXaxis()->SetTi    
251       hElectronSpectrumBeam->GetYaxis()->SetTi    
252       hElectronSpectrumBeam->GetYaxis()->SetTi    
253       //Normalize histogram per bin width and     
254       norm_th1_per_bin_width_per_primaries(hEl    
255       hElectronSpectrumBeam->Draw("H");           
256       ElectronSpectrumBeam->SetLogy();            
257       ElectronSpectrumBeam->Print("./Results/P    
258     }                                             
259                                                   
260   //Gammas//                                      
261   TCanvas *GammaSpectrumBeam = new TCanvas("Ga    
262   TH1D *hGammaSpectrumBeam = (TH1D*) f->Get("H    
263   if(hGammaSpectrumBeam->GetEntries() !=0)        
264     {                                             
265       hGammaSpectrumBeam->GetXaxis()->SetTitle    
266       hGammaSpectrumBeam->GetYaxis()->SetTitle    
267       hGammaSpectrumBeam->GetYaxis()->SetTitle    
268       hGammaSpectrumBeam->Draw("H");              
269       //Normalize histogram per bin width and     
270       norm_th1_per_bin_width_per_primaries(hGa    
271       GammaSpectrumBeam->SetLogy();               
272       GammaSpectrumBeam->Print("./Results/Part    
273     }                                             
274                                                   
275   //Neutrons//                                    
276   TCanvas *NeutronSpectrumBeam = new TCanvas("    
277   TH1D *hNeutronSpectrumBeam = (TH1D*) f->Get(    
278   if(hNeutronSpectrumBeam->GetEntries() !=0)      
279     {                                             
280       hNeutronSpectrumBeam->GetXaxis()->SetTit    
281       hNeutronSpectrumBeam->GetYaxis()->SetTit    
282       hNeutronSpectrumBeam->GetYaxis()->SetTit    
283       hNeutronSpectrumBeam->Draw("H");            
284       //Normalize histogram per bin width and     
285       norm_th1_per_bin_width_per_primaries(hNe    
286       NeutronSpectrumBeam->SetLogy();             
287       NeutronSpectrumBeam->Print("./Results/Pa    
288     }                                             
289                                                   
290                                                   
291   //----------------->> PARTICLES EMITTED DUE     
292                                                   
293   //Positrons//                                   
294   TCanvas *PositronSpectrumDecay = new TCanvas    
295   TH1D *hPositronSpectrumDecay = (TH1D*) f->Ge    
296   if(hPositronSpectrumDecay->GetEntries() !=0)    
297     {                                             
298       hPositronSpectrumDecay->GetXaxis()->SetT    
299       hPositronSpectrumDecay->GetYaxis()->SetT    
300       hPositronSpectrumDecay->GetYaxis()->SetT    
301       //Normalize histogram per bin width and     
302       norm_th1_per_bin_width_per_primaries(hPo    
303       hPositronSpectrumDecay->Draw("H");          
304       PositronSpectrumDecay->SetLogy();           
305       PositronSpectrumDecay->Print("./Results/    
306     }                                             
307                                                   
308   //Electrons//                                   
309   TCanvas *ElectronSpectrumDecay = new TCanvas    
310   TH1D *hElectronSpectrumDecay = (TH1D*) f->Ge    
311   if(hElectronSpectrumDecay->GetEntries() !=0)    
312     {                                             
313       hElectronSpectrumDecay->GetXaxis()->SetT    
314       hElectronSpectrumDecay->GetYaxis()->SetT    
315       hElectronSpectrumDecay->GetYaxis()->SetT    
316       //Normalize histogram per bin width and     
317       norm_th1_per_bin_width_per_primaries(hEl    
318       hElectronSpectrumDecay->Draw("H");          
319       ElectronSpectrumDecay->SetLogy();           
320       ElectronSpectrumDecay->Print("./Results/    
321     }                                             
322                                                   
323   //Gammas//                                      
324   TCanvas *GammaSpectrumDecay = new TCanvas("G    
325   TH1D *hGammaSpectrumDecay = (TH1D*) f->Get("    
326   if(hGammaSpectrumDecay->GetEntries() !=0)       
327     {                                             
328       hGammaSpectrumDecay->GetXaxis()->SetTitl    
329       hGammaSpectrumDecay->GetYaxis()->SetTitl    
330       hGammaSpectrumDecay->GetYaxis()->SetTitl    
331       //Normalize histogram per bin width and     
332       norm_th1_per_bin_width_per_primaries(hGa    
333       hGammaSpectrumDecay->Draw("H");             
334       GammaSpectrumDecay->SetLogy();              
335       GammaSpectrumDecay->Print("./Results/Par    
336     }                                             
337                                                   
338   //Neutrons//                                    
339    TCanvas *NeutronSpectrumDecay = new TCanvas    
340    TH1D *hNeutronSpectrumDecay = (TH1D*) f->Ge    
341    if(hNeutronSpectrumDecay->GetEntries() !=0)    
342      {                                            
343        hNeutronSpectrumDecay->GetXaxis()->SetT    
344        hNeutronSpectrumDecay->GetYaxis()->SetT    
345        hNeutronSpectrumDecay->GetYaxis()->SetT    
346        //Normalize histogram per bin width and    
347        norm_th1_per_bin_width_per_primaries(hN    
348        hNeutronSpectrumDecay->Draw("H");          
349        NeutronSpectrumDecay->SetLogy();           
350        NeutronSpectrumDecay->Print("./Results/    
351      }                                            
352                                                   
353                                                   
354   //Nu_e//                                        
355   TCanvas *NuESpectrumDecay = new TCanvas("NuE    
356   TH1D *hNuESpectrumDecay = (TH1D*) f->Get("H1    
357   if(hNuESpectrumDecay->GetEntries() !=0)         
358     {                                             
359       hNuESpectrumDecay->GetXaxis()->SetTitle(    
360       hNuESpectrumDecay->GetYaxis()->SetTitle(    
361       hNuESpectrumDecay->GetYaxis()->SetTitleO    
362       //Normalize histogram per bin width and     
363       norm_th1_per_bin_width_per_primaries(hNu    
364       hNuESpectrumDecay->Draw("H");               
365       NuESpectrumDecay->SetLogy();                
366       NuESpectrumDecay->Print("./Results/Parti    
367     }                                             
368                                                   
369   //AntiNu_e//                                    
370   TCanvas *AntiNuESpectrumDecay = new TCanvas(    
371   TH1D *hAntiNuESpectrumDecay = (TH1D*) f->Get    
372   if(hAntiNuESpectrumDecay->GetEntries() !=0)     
373     {                                             
374       hAntiNuESpectrumDecay->GetXaxis()->SetTi    
375       hAntiNuESpectrumDecay->GetYaxis()->SetTi    
376       hAntiNuESpectrumDecay->GetYaxis()->SetTi    
377       //Normalize histogram per bin width and     
378       norm_th1_per_bin_width_per_primaries(hAn    
379       hAntiNuESpectrumDecay->Draw("H");           
380       AntiNuESpectrumDecay->SetLogy();            
381       AntiNuESpectrumDecay->Print("./Results/P    
382     }                                             
383                                                   
384                                                   
385                                                   
386                                                   
387   /////////////////                               
388   //2D histograms//                               
389   /////////////////                               
390                                                   
391   TH2D *hBeamIntensityTarget = (TH2D*) f->Get(    
392   if(hBeamIntensityTarget->GetEntries()!=0)       
393     {                                             
394       TCanvas *BeamIntensityTarget = new TCanv    
395       hBeamIntensityTarget->GetXaxis()->SetTit    
396       hBeamIntensityTarget->GetYaxis()->SetTit    
397       hBeamIntensityTarget->SetTitle("Beam int    
398       //Normalizing                               
399       norm_th2_per_bin_width_per_primaries(hBe    
400       hBeamIntensityTarget->GetXaxis()->SetMax    
401       hBeamIntensityTarget->GetYaxis()->SetMax    
402       hBeamIntensityTarget->GetZaxis()->SetMax    
403       hBeamIntensityTarget->Draw("colz");         
404                                                   
405       gStyle->SetOptStat(0);                      
406       BeamIntensityTarget->Update();              
407       BeamIntensityTarget->Print("./Results/Be    
408       BeamIntensityTarget->Print("./Results/Be    
409     }                                             
410                                                   
411   TH2D *hBeamIntensityFoil = (TH2D*) f->Get("H    
412   if(hBeamIntensityFoil->GetEntries()!=0)         
413     {                                             
414       TCanvas *BeamIntensityFoil = new TCanvas    
415       hBeamIntensityFoil->GetXaxis()->SetTitle    
416       hBeamIntensityFoil->GetYaxis()->SetTitle    
417       hBeamIntensityFoil->SetTitle("Beam inten    
418       //Normalizing                               
419       norm_th2_per_bin_width_per_primaries(hBe    
420       hBeamIntensityFoil->GetXaxis()->SetMaxDi    
421       hBeamIntensityFoil->GetYaxis()->SetMaxDi    
422       hBeamIntensityFoil->GetZaxis()->SetMaxDi    
423       hBeamIntensityFoil->Draw("colz");           
424                                                   
425       BeamIntensityFoil->Print("./Results/Beam    
426     }                                             
427                                                   
428   TH2D *hBeamIntensityOutTarget = (TH2D*) f->G    
429   if(hBeamIntensityOutTarget->GetEntries()!=0)    
430     {                                             
431       TCanvas *BeamIntensityOutTarget = new TC    
432                                                   
433       hBeamIntensityOutTarget->GetXaxis()->Set    
434       hBeamIntensityOutTarget->GetYaxis()->Set    
435       hBeamIntensityOutTarget->SetTitle("Beam     
436       hBeamIntensityOutTarget->Draw("colz");      
437      //Normalizing                                
438       norm_th2_per_bin_width_per_primaries(hBe    
439       hBeamIntensityOutTarget->GetXaxis()->Set    
440       hBeamIntensityOutTarget->GetYaxis()->Set    
441       hBeamIntensityOutTarget->GetZaxis()->Set    
442                                                   
443       BeamIntensityOutTarget->Print("./Results    
444     }                                             
445                                                   
446                                                   
447                                                   
448   TH2D *hRadioisotopeProduction = (TH2D*) f->G    
449   if(hRadioisotopeProduction->GetEntries()!=0)    
450     {                                             
451       TCanvas *RadioisotopeProduction = new TC    
452       hRadioisotopeProduction->GetXaxis()->Set    
453       hRadioisotopeProduction->GetXaxis()->Set    
454       hRadioisotopeProduction->GetYaxis()->Set    
455       hRadioisotopeProduction->GetYaxis()->Set    
456       hRadioisotopeProduction->GetZaxis()->Set    
457       hRadioisotopeProduction->GetZaxis()->Set    
458       hRadioisotopeProduction->SetTitle("Numbe    
459       //Normalizing                               
460       norm_th2_per_bin_width_per_primaries(hRa    
461       hRadioisotopeProduction->GetXaxis()->Set    
462       hRadioisotopeProduction->GetYaxis()->Set    
463       hRadioisotopeProduction->GetZaxis()->Set    
464       hRadioisotopeProduction->Draw("lego2");     
465                                                   
466       RadioisotopeProduction->SetLogz();          
467       RadioisotopeProduction->Print("./Results    
468       RadioisotopeProduction->Print("./Results    
469     }                                             
470                                                   
471                                                   
472                                                   
473                                                   
474   TH2D *hEnergyDepth = (TH2D*) f->Get("H23;1")    
475   if(hEnergyDepth->GetEntries()!=0)               
476     {                                             
477                                                   
478       TCanvas *EnergyDepth = new TCanvas("Ener    
479                                                   
480       hEnergyDepth->GetXaxis()->SetTitle("Dept    
481       hEnergyDepth->GetYaxis()->SetTitle("Ener    
482       hEnergyDepth->SetTitle("Energy of the pr    
483       norm_th2_per_bin_width_per_primaries(hEn    
484       hEnergyDepth->GetXaxis()->SetMaxDigits(3    
485       hEnergyDepth->GetYaxis()->SetMaxDigits(3    
486       hEnergyDepth->GetZaxis()->SetMaxDigits(3    
487       hEnergyDepth->Draw("colz");                 
488                                                   
489       EnergyDepth->SetLogz();                     
490       EnergyDepth->Print("./Results/BeamData/E    
491     }                                             
492                                                   
493                                                   
494     /////////////////////////////////////////     
495   //Stable isotope production by the beam//       
496   /////////////////////////////////////////       
497                                                   
498                                                   
499   //------------------------------------------    
500   //                           Activity           
501   //------------------------------------------    
502                                                   
503   /*                                              
504   TCanvas *ActivityPrimary = new TCanvas("Acti    
505   TH1D *hActivityPrimary = (TH1D*) f->Get("H12    
506   hActivityPrimary->GetXaxis()->Set(hActivityP    
507   hActivityPrimary->GetXaxis()->SetTitle("Isot    
508   hActivityPrimary->GetYaxis()->SetTitle("Acti    
509   hActivityPrimary->Draw();                       
510                                                   
511   ActivityPrimary->SetLogy();                     
512   ActivityPrimary->Print("./Results/ActivityPe    
513                                                   
514   TCanvas *ActivityDaughter = new TCanvas("Act    
515                                                   
516   hActivityDaughter = (TH1F*) h1DH118->Clone()    
517   hActivityDaughter->GetXaxis()->Set(hActivity    
518   hActivityDaughter->GetXaxis()->SetTitle("Iso    
519   hActivityDaughter->GetYaxis()->SetTitle("Act    
520   hActivityDaughter->Draw();                      
521                                                   
522   ActivityDaughter->SetLogy();                    
523   ActivityDaughter->Print("./Results/ActivityP    
524                                                   
525                                                   
526                                                   
527   /*                                              
528   TCanvas *StableIsotopes = new TCanvas("Stabl    
529                                                   
530   hStableIsotopes = (TH1F*) h1DH117->Clone();     
531   hStableIsotopes->GetXaxis()->Set(hStableIsot    
532   hStableIsotopes->GetXaxis()->SetTitle("Stabl    
533   hStableIsotopes->GetYaxis()->SetTitle("Yield    
534   hStableIsotopes->Draw();                        
535                                                   
536   StableIsotopes->SetLogy();                      
537   StableIsotopes->Print("./Results/IsotopesPro    
538   */                                              
539   /*                                              
540   /////////////////////                           
541   //Yield per isotope//                           
542   /////////////////////                           
543                                                   
544   TCanvas *YieldParent = new TCanvas("YieldPer    
545                                                   
546   hYieldParent = (TH1F*) h1DH14->Clone();         
547   hYieldParent->GetXaxis()->Set(hYieldParent.G    
548   hYieldParent->GetXaxis()->SetTitle("Isotope"    
549   hYieldParent->GetYaxis()->SetTitle("Yield");    
550   hYieldParent->Draw();                           
551                                                   
552   YieldParent->SetLogy();                         
553   YieldParent->Print("./Results/YieldPerParent    
554                                                   
555   TCanvas *YieldDaughter = new TCanvas("YieldP    
556                                                   
557   hYieldDaughter = (TH1F*) h1DH119->Clone();      
558   hYieldDaughter->GetXaxis()->Set(hYieldDaught    
559   hYieldDaughter->GetXaxis()->SetTitle("Isotop    
560   hYieldDaughter->GetYaxis()->SetTitle("Yield"    
561   hYieldDaughter->Draw();                         
562                                                   
563   YieldDaughter->SetLogy();                       
564   YieldDaughter->Print("./Results/YieldPerDaug    
565                                                   
566                                                   
567   TCanvas *ProductionPerSecParent = new TCanva    
568                                                   
569   hProdPerSec = (TH1F*) h1DH123->Clone();         
570   hProdPerSec->GetXaxis()->Set(hProdPerSec.Get    
571   hProdPerSec->GetXaxis()->SetTitle("Isotope")    
572   hProdPerSec->GetYaxis()->SetTitle("Productio    
573   hProdPerSec->Draw();                            
574                                                   
575   ProductionPerSecParent->SetLogy();              
576   ProductionPerSecParent->Print("./Results/Pro    
577                                                   
578                                                   
579   TCanvas *ProductionPerSecDaughter = new TCan    
580                                                   
581   hProdPerSecDaughter = (TH1F*) h1DH124->Clone    
582   hProdPerSecDaughter->GetXaxis()->Set(hProdPe    
583   hProdPerSecDaughter->GetXaxis()->SetTitle("I    
584   hProdPerSecDaughter->GetYaxis()->SetTitle("P    
585   hProdPerSecDaughter->Draw();                    
586                                                   
587   ProductionPerSecDaughter->SetLogy();            
588   ProductionPerSecDaughter->Print("./Results/P    
589                                                   
590                                                   
591                                                   
592   */                                              
593   //////////////////                              
594   //Decay constant//                              
595   //////////////////                              
596   /*                                              
597   TH1D *hYieldParent = (TH1D*) f->Get("H14;1")    
598   hYieldParent->GetXaxis()->Set(hYieldParent->    
599                                                   
600   TH1D *hYieldDaughter = (TH1D*) f->Get("H119"    
601   hYieldDaughter->GetXaxis()->Set(hYieldDaught    
602                                                   
603   TH1D *hProdPerSec = (TH1D*) f->Get("H123");     
604   hProdPerSec->GetXaxis()->Set(hProdPerSec->Ge    
605                                                   
606   TH1D *hProdPerSecDaughter = (TH1D*) f->Get("    
607   hProdPerSecDaughter->GetXaxis()->Set(hProdPe    
608                                                   
609   TH1D *hConstantParent = (TH1D*) f->Get("H120    
610   hConstantParent->GetXaxis()->Set(hConstantPa    
611                                                   
612   TH1D *hConstantDaughter = (TH1D*) f->Get("H1    
613   hConstantDaughter->GetXaxis()->Set(hConstant    
614                                                   
615   TH1D *hConstantDaughterParent = (TH1D*) f->G    
616   hConstantDaughterParent->GetXaxis()->Set(hCo    
617   */                                              
618                                                   
619                                                   
620   /////////////////////////////                   
621   //Plots of theorical curves//                   
622   /////////////////////////////                   
623                                                   
624   //------------------------------------------    
625   //                 CASE OF PARENT ISOTOPES      
626   //------------------------------------------    
627                                                   
628   vector<string> name;            //<---- name    
629   vector<double> hDecayConstant;   //<---- in     
630   vector<double> hHalfLifeTime;   //<---- in h    
631   vector<double> hProdPerSec;     //<---- nucl    
632   vector<double> hYieldParent;    //<---- yiel    
633   vector<double> hActivityParent; //<---- acti    
634                                                   
635   string s_tmp;                                   
636   double x_tmp;                                   
637   int i_tmp;                                      
638   bool isEoF = false;                             
639                                                   
640   //------------------------ READING THE INPUT    
641   G4output.open("Output_ParentIsotopes.txt");     
642   for(int i=0;i<4;i++)getline(G4output,endLine    
643   while(!isEoF)                                   
644     {                                             
645       G4output >> s_tmp; getline(G4output,endL    
646       isEoF = G4output.eof();                     
647       if(!isEoF)                                  
648   {                                               
649                                                   
650     name.push_back(s_tmp);                        
651     getline(G4output,endLine); //number of iso    
652     G4output >> x_tmp; getline(G4output,endLin    
653     hDecayConstant.push_back(x_tmp);              
654     G4output >> x_tmp; getline(G4output,endLin    
655     hHalfLifeTime.push_back(x_tmp);               
656     getline(G4output,endLine); //<--- process     
657     G4output >> x_tmp; getline(G4output,endLin    
658     hProdPerSec.push_back(x_tmp);                 
659     G4output >> x_tmp; getline(G4output,endLin    
660     hYieldParent.push_back(x_tmp);                
661     G4output >> x_tmp; getline(G4output,endLin    
662     hActivityParent.push_back(x_tmp);             
663     getline(G4output,endLine); //<--- end of i    
664   }                                               
665     }                                             
666                                                   
667   G4output.close();                               
668                                                   
669                                                   
670   //------------------------ CALCULATING THE Y    
671   const int size_parents = hYieldParent.size()    
672                                                   
673   //---> Yield                                    
674   TF1* table[size_parents] ;                      
675   TLegend* leg = new TLegend(0.85,0.35,0.95,0.    
676   double maximum;                                 
677                                                   
678   //---> Activity                                 
679   TF1* tableActivity [size_parents] ;             
680   TLegend* legActivity = new TLegend(0.85,0.35    
681   double maximumActivity = 0;                     
682   stringstream ssTotalActivity;                   
683                                                   
684   for(int i=0;i<hYieldParent.size();i++)          
685     {                                             
686       string nameIsotope = name[i];               
687       double yield = hYieldParent[i];             
688       double decayConstant = hDecayConstant[i]    
689       double halfLifeTime = hHalfLifeTime[i];     
690       double nucleiPerSec = hProdPerSec[i]*360    
691       double conv = 2.70E-8;                      
692                                                   
693       stringstream titleCanvas;                   
694       stringstream titleHisto;                    
695       stringstream titleLeg;                      
696                                                   
697       titleCanvas << nameIsotope << " Producti    
698       titleHisto << nameIsotope << " productio    
699       titleLeg << nameIsotope ;                   
700                                                   
701       ////CALCULATION OF SATURATION/////          
702       double calculationYield = nucleiPerSec/d    
703       double calculationActivity = conv*nuclei    
704       double timeSaturationCalculation = 10.*l    
705       double saturationYield = nucleiPerSec/de    
706       double saturationActivity = conv*nucleiP    
707                                                   
708       //To double check: this calculation must    
709       //cout << calculationYield << " should b    
710       //cout << calculationActivity << " shoul    
711                                                   
712       stringstream ssYield,ss1Yield,ssActivity    
713                                                   
714       //STRINGSTREAM FOR NUCLEI PRODUCTION        
715       ssYield << "(x<="<< tIrradiation << ")*"    
716                                                   
717       //STRINGSTREAM FOR THE SATURATION           
718       ss1Yield << nucleiPerSec/decayConstant <    
719                                                   
720       //STRINGSTREAM FOR ACTIVITY ACCORDING TO    
721       ssActivity << "(x<="<< tIrradiation << "    
722                                                   
723       //STRINGSTREAM FOR ACTIVITY SATURATION      
724       ss1Activity << conv*nucleiPerSec << "*(1    
725                                                   
726       //TOTAL ACTIVITY                            
727       if(halfLifeTime > halfLifeLimit)            
728   {                                               
729     if(i == 0){                                   
730       ssTotalActivity << "(x<="<< tIrradiation    
731     }                                             
732     if(i > 0){                                    
733       ssTotalActivity << " + (x<="<< tIrradiat    
734     }                                             
735   }                                               
736                                                   
737       double max;                                 
738                                                   
739       //PLOT OF NUCLEI PRODUCTION                 
740       TF1 *fProd = new TF1(titleHisto.str().c_    
741       fProd->SetTitle(titleHisto.str().c_str()    
742       fProd->GetXaxis()->SetTitle("Time (hour)    
743       fProd->GetYaxis()->SetTitle("Number of n    
744                                                   
745       max = fProd->GetMaximum();                  
746       if(max>maximum){ maximum = max;};           
747                                                   
748                                                   
749       TF1 *fActivity = new TF1(titleHisto.str(    
750       fActivity->SetTitle(titleHisto.str().c_s    
751       fActivity->GetXaxis()->SetTitle("Time (h    
752       fActivity->GetYaxis()->SetTitle("Activit    
753                                                   
754       max = fActivity->GetMaximum();              
755       if(max>maximumActivity){ maximumActivity    
756                                                   
757       leg->AddEntry(fProd,titleLeg.str().c_str    
758       table[i]=fProd;                             
759                                                   
760       legActivity->AddEntry(fActivity,titleLeg    
761       tableActivity[i]=fActivity;                 
762                                                   
763                                                   
764       //---->Plotting yield as a function of t    
765       TCanvas *canvasYield = new TCanvas(title    
766       if(halfLifeTime > halfLifeLimit) //has a    
767   {                                               
768     fProd->Draw();                                
769     stringstream saveName;                        
770     saveName << "./Results/IsotopesProduction/    
771     canvasYield->Print(saveName.str().c_str())    
772   }                                               
773                                                   
774       //---->Plotting activity as a function o    
775       TCanvas *canvasActivity = new TCanvas(ti    
776       if(halfLifeTime > halfLifeLimit) //has a    
777   {                                               
778     fActivity->Draw();                            
779     stringstream saveName;                        
780     saveName << "./Results/IsotopesProduction/    
781     canvasActivity->Print(saveName.str().c_str    
782   }                                               
783                                                   
784                                                   
785       //PLOT OF SATURATION CURVES                 
786       stringstream titleCanvas1;                  
787       stringstream titleHisto1;                   
788       titleHisto1 << nameIsotope << " saturati    
789       titleCanvas1 << nameIsotope << " Saturat    
790                                                   
791       TCanvas *canvasSaturationYield = new TCa    
792       TF1 *fSaturationYield = new TF1(titleHis    
793       fSaturationYield->SetTitle(titleHisto1.s    
794       fSaturationYield->GetXaxis()->SetTitle("    
795       fSaturationYield->GetYaxis()->SetTitle("    
796       fSaturationYield->Draw();                   
797                                                   
798       stringstream saveName1Yield;                
799       saveName1Yield << "./Results/IsotopesPro    
800       canvasSaturationYield->Print(saveName1Yi    
801                                                   
802                                                   
803       TCanvas *canvasSaturationActivity = new     
804       TF1 *fSaturationActivity = new TF1(title    
805       fSaturationActivity->SetTitle(titleHisto    
806       fSaturationActivity->GetXaxis()->SetTitl    
807       fSaturationActivity->GetYaxis()->SetTitl    
808       fSaturationActivity->Draw();                
809                                                   
810       stringstream saveName1Activity;             
811       saveName1Activity << "./Results/Isotopes    
812       canvasSaturationActivity->Print(saveName    
813                                                   
814                                                   
815     }                                             
816                                                   
817                                                   
818   //------------------------ PLOT ALL YIELDS O    
819   TCanvas* productionGraph = new TCanvas("Prod    
820   for(int i=0; i<size_parents; i++)               
821     {                                             
822       double halfLifeTime = hHalfLifeTime[i];     
823       if(halfLifeTime > halfLifeLimit)            
824   {                                               
825     int color = i+2;                              
826     if(color == 10) color = 35;                   
827                                                   
828     TF1* histo = (TF1*)table[i];                  
829     histo->GetYaxis()->SetRangeUser(0.,maximum    
830     histo->SetTitle("Production of isotopes");    
831     histo->SetLineColor(color);                   
832     histo->SetNpx(1000);                          
833                                                   
834     if(i==0)histo->Draw();                        
835     else histo->Draw("][sames");                  
836   }                                               
837     }                                             
838                                                   
839   leg->Draw("C,same");                            
840   productionGraph->SetGridy();                    
841   productionGraph->SetTicky();                    
842   productionGraph->SetLogy();                     
843   productionGraph->SetTitle("Radioisotope prod    
844   productionGraph->Print("./Results/IsotopesPr    
845   productionGraph->Print("./Results/IsotopesPr    
846                                                   
847                                                   
848                                                   
849   //------------------------ PLOT ALL YIELDS O    
850   TCanvas* ActivityGraph = new TCanvas("Activi    
851                                                   
852   TF1* histoActivity = (TF1*)tableActivity[0];    
853   histoActivity->SetLineColor(2);                 
854   histoActivity->GetYaxis()->SetRangeUser(0.,m    
855   histoActivity->SetTitle("Activity of isotope    
856   histoActivity->Draw();                          
857                                                   
858   for(int i=1; i<size_parents; i++)               
859     {                                             
860       double halfLifeTime = hHalfLifeTime[i];     
861       if(halfLifeTime > halfLifeLimit)            
862   {                                               
863     int color = i+2;                              
864     if(color == 10) color = 35;                   
865                                                   
866     TF1* histo = (TF1*)tableActivity[i];          
867     histo->GetYaxis()->SetRangeUser(0.,maximum    
868     histo->SetTitle("Activity of isotopes");      
869     histo->SetLineColor(color);                   
870     histo->SetNpx(1000);                          
871     if(i==0) histo->Draw();                       
872     else histo->Draw("][sames");                  
873   }                                               
874     }                                             
875                                                   
876   legActivity->Draw("same");                      
877   ActivityGraph->SetGridy();                      
878   ActivityGraph->SetTicky();                      
879   ActivityGraph->SetLogy();                       
880   ActivityGraph->Print("./Results/IsotopesProd    
881   ActivityGraph->Print("./Results/IsotopesProd    
882                                                   
883                                                   
884   TCanvas* TotalActivityGraph = new TCanvas("T    
885   TF1 *fActivity = new TF1("TotalActivity",ssT    
886   fActivity->SetTitle("Sum of the activity of     
887   fActivity->GetXaxis()->SetTitle("Time (hour)    
888   fActivity->GetYaxis()->SetTitle("Activity (m    
889   fActivity->Draw();                              
890   TotalActivityGraph->SetGridy();                 
891   TotalActivityGraph->SetTicky();                 
892   TotalActivityGraph->SetLogy();                  
893   TotalActivityGraph->Print("./Results/Isotope    
894                                                   
895                                                   
896                                                   
897                                                   
898   //------------------------------------------    
899   //                 CASE OF DAUGHTER ISOTOPES    
900   //------------------------------------------    
901                                                   
902   vector<string> nameParent;            //<---    
903   vector<string> nameDaughter;            //<-    
904   vector<double> hDecayConstantParent;   //<--    
905   vector<double> hDecayConstantDaughter;   //<    
906   vector<double> hHalfLifeTimeParent;   //<---    
907   vector<double> hHalfLifeTimeDaughter;   //<-    
908   vector<double> hProdPerSecDecay;     //<----    
909   vector<double> hYieldDecay;    //<---- yield    
910   vector<double> hActivityDecay; //<---- activ    
911                                                   
912                                                   
913   //------------------------ READING THE INPUT    
914   G4output.open("Output_DaughterIsotopes.txt")    
915   isEoF=false;                                    
916                                                   
917   for(int i=0;i<5;i++)getline(G4output,endLine    
918   while(!isEoF)                                   
919     {                                             
920       G4output >> s_tmp; getline(G4output,endL    
921       isEoF = G4output.eof();                     
922       if(!isEoF)                                  
923   {                                               
924                                                   
925     nameDaughter.push_back(s_tmp); //cout << s    
926     G4output >> s_tmp; getline(G4output,endLin    
927     nameParent.push_back(s_tmp); //cout << s_t    
928     G4output >> x_tmp; getline(G4output,endLin    
929     hDecayConstantDaughter.push_back(x_tmp); /    
930     G4output >> x_tmp; getline(G4output,endLin    
931     hDecayConstantParent.push_back(x_tmp); //c    
932     G4output >> x_tmp; getline(G4output,endLin    
933     hHalfLifeTimeDaughter.push_back(x_tmp); //    
934     G4output >> x_tmp; getline(G4output,endLin    
935     hHalfLifeTimeParent.push_back(x_tmp); //co    
936     G4output >> x_tmp; getline(G4output,endLin    
937     hProdPerSecDecay.push_back(x_tmp); //cout     
938     G4output >> x_tmp; getline(G4output,endLin    
939     hYieldDecay.push_back(x_tmp); //cout << x_    
940     G4output >> x_tmp; getline(G4output,endLin    
941     hActivityDecay.push_back(x_tmp); //cout <<    
942     getline(G4output,endLine); //<--- end of i    
943     //getchar();                                  
944   }                                               
945     }                                             
946                                                   
947   G4output.close();                               
948                                                   
949   //------------------------ CALCULATING THE Y    
950   for(int i=1;i<=hDecayConstantDaughter.size()    
951                                                   
952     string nameIsotope = nameDaughter[i];         
953     double yieldEOBDaughter = hYieldDecay[i];     
954     double decayConstantDaughter = hDecayConst    
955     double decayConstantParent = hDecayConstan    
956     double halfLifeDaughter = hHalfLifeTimeDau    
957     double halfLifeParent = hHalfLifeTimeParen    
958     double nucleiPerSec = hProdPerSecDecay[i]*    
959     double yieldEOBParent = nucleiPerSec/decay    
960                                                   
961                                                   
962     if(halfLifeDaughter > halfLifeLimit && hal    
963                                                   
964       stringstream titleCanvas;                   
965       stringstream titleHisto;                    
966                                                   
967       titleCanvas << nameIsotope << " Decay";     
968       titleHisto << nameIsotope << " Decay" ;     
969                                                   
970       double yieldEOBcalc = nucleiPerSec*((1-e    
971                                                   
972       cout << "Isotope : " << nameIsotope << "    
973        << " decay constant : " << decayConstan    
974      << " nucleiPerSec of the parent " << nucl    
975                                                   
976                                                   
977       TCanvas *canvasYield = new TCanvas(title    
978                                                   
979                                                   
980       stringstream ss;                            
981                                                   
982       ss << "(x<="<< tIrradiation << ")*" << n    
983                                                   
984                                                   
985       TF1 *fProd = new TF1(titleHisto.str().c_    
986       fProd->SetTitle(titleHisto.str().c_str()    
987       fProd->GetXaxis()->SetTitle("Time (hour)    
988       fProd->GetYaxis()->SetTitle("Number of n    
989                                                   
990     }                                             
991                                                   
992   }                                               
993                                                   
994   f->Close();                                     
995   results.close();                                
996                                                   
997                                                   
998 }                                                 
999                                                   
1000                                                  
1001