| Geant4 Cross Reference |
1 #include "TF1.h" 1 #include "TF1.h"
2 #include "TH2.h" 2 #include "TH2.h"
3 #include "TH2D.h" 3 #include "TH2D.h"
4 #include "TH1.h" 4 #include "TH1.h"
5 #include "TMath.h" 5 #include "TMath.h"
6 #include <string.h> 6 #include <string.h>
7 #include "TGraph.h" 7 #include "TGraph.h"
8 #include <map> 8 #include <map>
9 9
10 using namespace std; 10 using namespace std;
11 11
12 void norm_th1_per_bin_width_per_primaries(TH1D 12 void norm_th1_per_bin_width_per_primaries(TH1D* histo, int total_primaries)
13 { 13 {
14 int xbins; 14 int xbins;
15 double value,xbinwidth; 15 double value,xbinwidth;
16 16
17 //Normalize histogram per bin width and per 17 //Normalize histogram per bin width and per incoming particle.
18 xbins = histo->GetXaxis()->GetNbins(); 18 xbins = histo->GetXaxis()->GetNbins();
19 for(int i=1; i<xbins;i++) 19 for(int i=1; i<xbins;i++)
20 { 20 {
21 xbinwidth = histo->GetBinWidth(i); 21 xbinwidth = histo->GetBinWidth(i);
22 value = histo->GetBinContent(i); 22 value = histo->GetBinContent(i);
23 value = value/xbinwidth/(total_primaries 23 value = value/xbinwidth/(total_primaries*1.);
24 histo->SetBinContent(i,value); 24 histo->SetBinContent(i,value);
25 25
26 //Setting error bin content 26 //Setting error bin content
27 value = histo->GetBinError(i); 27 value = histo->GetBinError(i);
28 value = value/xbinwidth/(total_primaries 28 value = value/xbinwidth/(total_primaries*1.);
29 histo->SetBinError(i,value); 29 histo->SetBinError(i,value);
30 } 30 }
31 } 31 }
32 32
33 void norm_th2_per_bin_width_per_primaries(TH2D 33 void norm_th2_per_bin_width_per_primaries(TH2D* histo, int total_primaries)
34 { 34 {
35 int xbins,ybins; 35 int xbins,ybins;
36 double value,xbinwidth,ybinwidth; 36 double value,xbinwidth,ybinwidth;
37 37
38 //Normalize histogram per bin width and per 38 //Normalize histogram per bin width and per incoming particle.
39 xbins = histo->GetXaxis()->GetNbins(); 39 xbins = histo->GetXaxis()->GetNbins();
40 ybins = histo->GetYaxis()->GetNbins(); 40 ybins = histo->GetYaxis()->GetNbins();
41 for(int i=1; i<xbins;i++) 41 for(int i=1; i<xbins;i++)
42 { 42 {
43 xbinwidth = histo->GetXaxis()->GetBinWid 43 xbinwidth = histo->GetXaxis()->GetBinWidth(i);
44 44
45 for(int j=1; j<ybins;j++) 45 for(int j=1; j<ybins;j++)
46 { 46 {
47 ybinwidth = histo->GetYaxis()->GetBinWidth 47 ybinwidth = histo->GetYaxis()->GetBinWidth(j);
48 48
49 value = histo->GetBinContent(i,j); 49 value = histo->GetBinContent(i,j);
50 value = value/xbinwidth/ybinwidth/(total_p 50 value = value/xbinwidth/ybinwidth/(total_primaries*1.);
51 histo->SetBinContent(i,j,value); 51 histo->SetBinContent(i,j,value);
52 52
53 //Setting error bin content 53 //Setting error bin content
54 value = histo->GetBinError(i,j); 54 value = histo->GetBinError(i,j);
55 value = value/xbinwidth/ybinwidth/(total_p 55 value = value/xbinwidth/ybinwidth/(total_primaries*1.);
56 histo->SetBinError(i,j,value); 56 histo->SetBinError(i,j,value);
57 } 57 }
58 } 58 }
59 } 59 }
60 60
61 61
62 void Plot(){ 62 void Plot(){
63 63
64 64
65 //PARAMETERS 65 //PARAMETERS
66 double tMin = 0; 66 double tMin = 0;
67 double tMax = 30.; //in hour(s) 67 double tMax = 30.; //in hour(s)
68 double halfLifeLimit = 1./60.; //in hour(s 68 double halfLifeLimit = 1./60.; //in hour(s)
69 69
70 double tIrradiation; //in hour(s) 70 double tIrradiation; //in hour(s)
71 double beamCurrent; //in µA 71 double beamCurrent; //in µA
72 int total_primaries; 72 int total_primaries;
73 73
74 74
75 75
76 //VARIABLES 76 //VARIABLES
77 string endLine; 77 string endLine;
78 78
79 //Getting the parameters from the G4 output 79 //Getting the parameters from the G4 output file.
80 ifstream G4output; 80 ifstream G4output;
81 G4output.open("Output_General.txt"); 81 G4output.open("Output_General.txt");
82 for(int i=0;i<6;i++)getline(G4output,endLine 82 for(int i=0;i<6;i++)getline(G4output,endLine);
83 G4output >> beamCurrent; getline(G4output,en 83 G4output >> beamCurrent; getline(G4output,endLine);
84 G4output >> tIrradiation; getline(G4output,e 84 G4output >> tIrradiation; getline(G4output,endLine);
85 for(int i=0;i<6;i++)getline(G4output,endLine 85 for(int i=0;i<6;i++)getline(G4output,endLine);
86 G4output >> total_primaries; 86 G4output >> total_primaries;
87 G4output.close(); 87 G4output.close();
88 88
89 beamCurrent*=1e6; //<--- convert from A to  89 beamCurrent*=1e6; //<--- convert from A to µA.
90 90
91 /* 91 /*
92 cout << "Irradiation time = " << tIrradiatio 92 cout << "Irradiation time = " << tIrradiation << " h." << endl;
93 cout << "Beam current = " << beamCurrent << 93 cout << "Beam current = " << beamCurrent << " µA." << endl;
94 cout << "Total primaries = " << total_primar 94 cout << "Total primaries = " << total_primaries << endl;
95 getchar();*/ 95 getchar();*/
96 96
97 97
98 system("rm -r Results"); 98 system("rm -r Results");
99 system("mkdir Results"); 99 system("mkdir Results");
100 system("mkdir Results/IsotopesProduction"); 100 system("mkdir Results/IsotopesProduction");
101 system("mkdir Results/ParticlesEnergySpectra 101 system("mkdir Results/ParticlesEnergySpectra");
102 system("mkdir Results/ParticlesEnergySpectra 102 system("mkdir Results/ParticlesEnergySpectra/Beam");
103 system("mkdir Results/ParticlesEnergySpectra 103 system("mkdir Results/ParticlesEnergySpectra/Decay");
104 system("mkdir Results/BeamData"); 104 system("mkdir Results/BeamData");
105 105
106 106
107 ofstream results; 107 ofstream results;
108 results.open("Results.txt"); 108 results.open("Results.txt");
109 results << "Parameters: " << endl; 109 results << "Parameters: " << endl;
110 results << "Time of irradiation: " << tIrrad 110 results << "Time of irradiation: " << tIrradiation << " hour(s)." << endl;
111 results << "Beam current: " << beamCurrent < 111 results << "Beam current: " << beamCurrent << " µA." << endl;
112 results << "Total number of simulated primar 112 results << "Total number of simulated primaries: " << total_primaries << endl;
113 results << "Please check they are the same a 113 results << "Please check they are the same as in the simulation. Otherwise change it by modifying the Plot.C file." << endl;
114 114
115 //Opening root file. 115 //Opening root file.
116 116
117 stringstream name_root_file; 117 stringstream name_root_file;
118 name_root_file << "./SolidTargetCyclotron.ro 118 name_root_file << "./SolidTargetCyclotron.root";
119 TFile *f = new TFile(name_root_file.str().c_ 119 TFile *f = new TFile(name_root_file.str().c_str(),"open");
120 120
121 //------------------------------------------ 121 //---------------------------------------------------------------//
122 // Energy Profile of the beam before/a 122 // Energy Profile of the beam before/after the target //
123 //------------------------------------------ 123 //---------------------------------------------------------------//
124 124
125 TCanvas *BeamEnergyTarget = new TCanvas("Bea 125 TCanvas *BeamEnergyTarget = new TCanvas("Beam energy profile before the target", "BeamTargetProfile");
126 126
127 TH1D *energyProfileBeamTarget = (TH1D*)f->Ge 127 TH1D *energyProfileBeamTarget = (TH1D*)f->Get("H10;1");
128 energyProfileBeamTarget->GetXaxis()->SetTitl 128 energyProfileBeamTarget->GetXaxis()->SetTitle("Energy (MeV)");
129 energyProfileBeamTarget->GetYaxis()->SetTitl 129 energyProfileBeamTarget->GetYaxis()->SetTitle("P(E) (MeV^{-1}.particle^{-1})");
130 energyProfileBeamTarget->SetTitle("Primary p 130 energyProfileBeamTarget->SetTitle("Primary particles energy when reaching the target, per primary particle");
131 131
132 energyProfileBeamTarget->GetXaxis()->SetMaxD 132 energyProfileBeamTarget->GetXaxis()->SetMaxDigits(2);
133 energyProfileBeamTarget->GetYaxis()->SetMaxD 133 energyProfileBeamTarget->GetYaxis()->SetMaxDigits(3);
134 134
135 //Normalize histogram per bin width and per 135 //Normalize histogram per bin width and per incoming particle.
136 norm_th1_per_bin_width_per_primaries(energyP 136 norm_th1_per_bin_width_per_primaries(energyProfileBeamTarget,total_primaries);
137 137
138 energyProfileBeamTarget->Draw("H"); 138 energyProfileBeamTarget->Draw("H");
139 BeamEnergyTarget->Print("./Results/BeamData/ 139 BeamEnergyTarget->Print("./Results/BeamData/BeamEnergyInTarget.pdf");
140 140
141 141
142 142
143 TCanvas *BeamEnergyOutTarget = new TCanvas(" 143 TCanvas *BeamEnergyOutTarget = new TCanvas("Beam energy profile after the target", "BeamTargetOutProfile");
144 144
145 TH1D *energyProfileBeamOutTarget = (TH1D*)f- 145 TH1D *energyProfileBeamOutTarget = (TH1D*)f->Get("H12;1");
146 energyProfileBeamOutTarget->GetXaxis()->SetT 146 energyProfileBeamOutTarget->GetXaxis()->SetTitle("Energy (MeV)");
147 energyProfileBeamOutTarget->GetYaxis()->SetT 147 energyProfileBeamOutTarget->GetYaxis()->SetTitle("P(E) (MeV^{-1}.particle^{-1})");
148 energyProfileBeamOutTarget->SetTitle("Primar 148 energyProfileBeamOutTarget->SetTitle("Primary particles energy when going out of the target, per primary particle");
149 149
150 energyProfileBeamOutTarget->GetXaxis()->SetM 150 energyProfileBeamOutTarget->GetXaxis()->SetMaxDigits(2);
151 energyProfileBeamOutTarget->GetYaxis()->SetM 151 energyProfileBeamOutTarget->GetYaxis()->SetMaxDigits(3);
152 152
153 //Normalize histogram per bin width and per 153 //Normalize histogram per bin width and per incoming particle.
154 norm_th1_per_bin_width_per_primaries(energyP 154 norm_th1_per_bin_width_per_primaries(energyProfileBeamOutTarget,total_primaries);
155 155
156 energyProfileBeamOutTarget->Draw("H"); 156 energyProfileBeamOutTarget->Draw("H");
157 BeamEnergyOutTarget->Print("./Results/BeamDa 157 BeamEnergyOutTarget->Print("./Results/BeamData/BeamEnergyOutTarget.pdf");
158 158
159 159
160 160
161 //------------------------------------------ 161 //---------------------------------------------------------------//
162 // Energy Profile of the beam before/ 162 // Energy Profile of the beam before/after the foil //
163 //------------------------------------------ 163 //---------------------------------------------------------------//
164 164
165 TCanvas *BeamEnergyFoil = new TCanvas("Beam 165 TCanvas *BeamEnergyFoil = new TCanvas("Beam energy profile before the foil", "BeamFoilProfile");
166 166
167 TH1D *energyProfileBeamFoil = (TH1D*)f->Get( 167 TH1D *energyProfileBeamFoil = (TH1D*)f->Get("H11;1");
168 energyProfileBeamFoil->GetXaxis()->SetTitle( 168 energyProfileBeamFoil->GetXaxis()->SetTitle("Energy (MeV)");
169 energyProfileBeamFoil->GetYaxis()->SetTitle( 169 energyProfileBeamFoil->GetYaxis()->SetTitle("P(E) (MeV^{-1}.particle^{-1})");
170 energyProfileBeamFoil->SetTitle("Primary par 170 energyProfileBeamFoil->SetTitle("Primary particles energy when reaching the foil, per primary particle");
171 171
172 energyProfileBeamFoil->GetXaxis()->SetMaxDig 172 energyProfileBeamFoil->GetXaxis()->SetMaxDigits(2);
173 energyProfileBeamFoil->GetYaxis()->SetMaxDig 173 energyProfileBeamFoil->GetYaxis()->SetMaxDigits(3);
174 174
175 //Normalize histogram per bin width and per 175 //Normalize histogram per bin width and per incoming particle.
176 norm_th1_per_bin_width_per_primaries(energyP 176 norm_th1_per_bin_width_per_primaries(energyProfileBeamFoil,total_primaries);
177 177
178 energyProfileBeamFoil->Draw("H"); 178 energyProfileBeamFoil->Draw("H");
179 BeamEnergyFoil->Print("./Results/BeamData/Be 179 BeamEnergyFoil->Print("./Results/BeamData/BeamEnergyInFoil.pdf");
180 180
181 181
182 182
183 TCanvas *BeamEnergyOutFoil = new TCanvas("Be 183 TCanvas *BeamEnergyOutFoil = new TCanvas("Beam energy profile after the foil", "BeamFoilOutProfile");
184 TH1D *energyProfileBeamOutFoil = (TH1D*)f->G 184 TH1D *energyProfileBeamOutFoil = (TH1D*)f->Get("H13;1");
185 energyProfileBeamOutFoil->GetXaxis()->SetTit 185 energyProfileBeamOutFoil->GetXaxis()->SetTitle("Energy (MeV)");
186 energyProfileBeamOutFoil->GetYaxis()->SetTit 186 energyProfileBeamOutFoil->GetYaxis()->SetTitle("P(E) (MeV^{-1}.particle^{-1})");
187 energyProfileBeamOutFoil->SetTitle("Primary 187 energyProfileBeamOutFoil->SetTitle("Primary particles energy when going out of the foil, per primary particle");
188 188
189 energyProfileBeamOutFoil->GetXaxis()->SetMax 189 energyProfileBeamOutFoil->GetXaxis()->SetMaxDigits(2);
190 energyProfileBeamOutFoil->GetYaxis()->SetMax 190 energyProfileBeamOutFoil->GetYaxis()->SetMaxDigits(3);
191 191
192 //Normalize histogram per bin width and per 192 //Normalize histogram per bin width and per incoming particle.
193 norm_th1_per_bin_width_per_primaries(energyP 193 norm_th1_per_bin_width_per_primaries(energyProfileBeamOutFoil,total_primaries);
194 194
195 energyProfileBeamOutFoil->Draw("H"); 195 energyProfileBeamOutFoil->Draw("H");
196 BeamEnergyOutFoil->Print("./Results/BeamData 196 BeamEnergyOutFoil->Print("./Results/BeamData/BeamEnergyOutFoil.pdf");
197 197
198 198
199 199
200 //------------------------------------------ 200 //---------------------------------------------------------------//
201 // Depth of isotope creation in t 201 // Depth of isotope creation in the target //
202 //------------------------------------------ 202 //---------------------------------------------------------------//
203 203
204 TCanvas *depthCreation = new TCanvas("DepthC 204 TCanvas *depthCreation = new TCanvas("DepthCreation", "Depth of isotope creation in the target per primary particle.");
205 205
206 TH1D *hDepthCreation = (TH1D*) f->Get("H14;1 206 TH1D *hDepthCreation = (TH1D*) f->Get("H14;1");
207 hDepthCreation->SetTitle("Depth of isotope c 207 hDepthCreation->SetTitle("Depth of isotope creation in the target per primary particle.");
208 hDepthCreation->GetXaxis()->SetTitle("Depth 208 hDepthCreation->GetXaxis()->SetTitle("Depth (mm)");
209 hDepthCreation->GetYaxis()->SetTitle("N isot 209 hDepthCreation->GetYaxis()->SetTitle("N isotopes (mm^{-1}.particle^{-1})");
210 210
211 hDepthCreation->GetYaxis()->SetMaxDigits(3); 211 hDepthCreation->GetYaxis()->SetMaxDigits(3);
212 212
213 //Normalize histogram per bin width and per 213 //Normalize histogram per bin width and per incoming particle.
214 norm_th1_per_bin_width_per_primaries(hDepthC 214 norm_th1_per_bin_width_per_primaries(hDepthCreation,total_primaries);
215 215
216 hDepthCreation->SetMarkerStyle(4); 216 hDepthCreation->SetMarkerStyle(4);
217 hDepthCreation->SetMarkerSize(1); 217 hDepthCreation->SetMarkerSize(1);
218 hDepthCreation->Draw("l"); 218 hDepthCreation->Draw("l");
219 219
220 depthCreation->Print("./Results/IsotopesProd 220 depthCreation->Print("./Results/IsotopesProduction/DepthCreation.pdf");
221 221
222 222
223 //------------------------------------------ 223 //---------------------------------------------------------------//
224 // Energy spectrum 224 // Energy spectrum //
225 //------------------------------------------ 225 //---------------------------------------------------------------//
226 226
227 //----------------->> PARTICLES EMITTED DUE 227 //----------------->> PARTICLES EMITTED DUE TO BEAM INTERACTIONS WITH THE TARGET
228 228
229 //Positrons// 229 //Positrons//
230 TCanvas *PositronSpectrumBeam = new TCanvas( 230 TCanvas *PositronSpectrumBeam = new TCanvas("PositronSpectrumBeam", "Spectrum of the positrons created by the beam in the target");
231 TH1D *hPositronSpectrumBeam = (TH1D*) f->Get 231 TH1D *hPositronSpectrumBeam = (TH1D*) f->Get("H15;1");
232 if(hPositronSpectrumBeam->GetEntries()!=0) 232 if(hPositronSpectrumBeam->GetEntries()!=0)
233 { 233 {
234 hPositronSpectrumBeam->GetXaxis()->SetTi 234 hPositronSpectrumBeam->GetXaxis()->SetTitle("Energy (MeV)");
235 hPositronSpectrumBeam->GetYaxis()->SetTi 235 hPositronSpectrumBeam->GetYaxis()->SetTitle("N positrons (MeV^{-1}.particle^{-1})");
236 //Normalize histogram per bin width and 236 //Normalize histogram per bin width and per incoming particle.
237 norm_th1_per_bin_width_per_primaries(hPo 237 norm_th1_per_bin_width_per_primaries(hPositronSpectrumBeam,total_primaries);
238 hPositronSpectrumBeam->GetYaxis()->SetMa 238 hPositronSpectrumBeam->GetYaxis()->SetMaxDigits(3);
239 hPositronSpectrumBeam->GetYaxis()->SetTi 239 hPositronSpectrumBeam->GetYaxis()->SetTitleOffset(1.2);
240 hPositronSpectrumBeam->Draw("H"); 240 hPositronSpectrumBeam->Draw("H");
241 PositronSpectrumBeam->SetLogy(); 241 PositronSpectrumBeam->SetLogy();
242 PositronSpectrumBeam->Print("./Results/P 242 PositronSpectrumBeam->Print("./Results/ParticlesEnergySpectra/Beam/PositronSpectrumBeam.pdf");
243 } 243 }
244 244
245 //Electrons// 245 //Electrons//
246 TCanvas *ElectronSpectrumBeam = new TCanvas( 246 TCanvas *ElectronSpectrumBeam = new TCanvas("ElectronSpectrumBeam", "Spectrum of the electrons created by the beam in the target");
247 TH1D *hElectronSpectrumBeam = (TH1D*) f->Get 247 TH1D *hElectronSpectrumBeam = (TH1D*) f->Get("H16;1");
248 if(hElectronSpectrumBeam->GetEntries() !=0) 248 if(hElectronSpectrumBeam->GetEntries() !=0)
249 { 249 {
250 hElectronSpectrumBeam->GetXaxis()->SetTi 250 hElectronSpectrumBeam->GetXaxis()->SetTitle("Energy (MeV)");
251 hElectronSpectrumBeam->GetYaxis()->SetTi 251 hElectronSpectrumBeam->GetYaxis()->SetTitle("N electrons (MeV^{-1}.particle^{-1})");
252 hElectronSpectrumBeam->GetYaxis()->SetTi 252 hElectronSpectrumBeam->GetYaxis()->SetTitleOffset(1.2);
253 //Normalize histogram per bin width and 253 //Normalize histogram per bin width and per incoming particle.
254 norm_th1_per_bin_width_per_primaries(hEl 254 norm_th1_per_bin_width_per_primaries(hElectronSpectrumBeam,total_primaries);
255 hElectronSpectrumBeam->Draw("H"); 255 hElectronSpectrumBeam->Draw("H");
256 ElectronSpectrumBeam->SetLogy(); 256 ElectronSpectrumBeam->SetLogy();
257 ElectronSpectrumBeam->Print("./Results/P 257 ElectronSpectrumBeam->Print("./Results/ParticlesEnergySpectra/Beam/ElectronSpectrumBeam.pdf");
258 } 258 }
259 259
260 //Gammas// 260 //Gammas//
261 TCanvas *GammaSpectrumBeam = new TCanvas("Ga 261 TCanvas *GammaSpectrumBeam = new TCanvas("GammaSpectrumBeam", "Spectrum of the gammas created by the beam in the target");
262 TH1D *hGammaSpectrumBeam = (TH1D*) f->Get("H 262 TH1D *hGammaSpectrumBeam = (TH1D*) f->Get("H17;1");
263 if(hGammaSpectrumBeam->GetEntries() !=0) 263 if(hGammaSpectrumBeam->GetEntries() !=0)
264 { 264 {
265 hGammaSpectrumBeam->GetXaxis()->SetTitle 265 hGammaSpectrumBeam->GetXaxis()->SetTitle("Energy (MeV)");
266 hGammaSpectrumBeam->GetYaxis()->SetTitle 266 hGammaSpectrumBeam->GetYaxis()->SetTitle("N Gammas (MeV^{-1}.particle^{-1})");
267 hGammaSpectrumBeam->GetYaxis()->SetTitle 267 hGammaSpectrumBeam->GetYaxis()->SetTitleOffset(1.2);
268 hGammaSpectrumBeam->Draw("H"); 268 hGammaSpectrumBeam->Draw("H");
269 //Normalize histogram per bin width and 269 //Normalize histogram per bin width and per incoming particle.
270 norm_th1_per_bin_width_per_primaries(hGa 270 norm_th1_per_bin_width_per_primaries(hGammaSpectrumBeam,total_primaries);
271 GammaSpectrumBeam->SetLogy(); 271 GammaSpectrumBeam->SetLogy();
272 GammaSpectrumBeam->Print("./Results/Part 272 GammaSpectrumBeam->Print("./Results/ParticlesEnergySpectra/Beam/GammaSpectrumBeam.pdf");
273 } 273 }
274 274
275 //Neutrons// 275 //Neutrons//
276 TCanvas *NeutronSpectrumBeam = new TCanvas(" 276 TCanvas *NeutronSpectrumBeam = new TCanvas("NeutronSpectrumBeam", "Spectrum of the neutrons created by the beam in the target");
277 TH1D *hNeutronSpectrumBeam = (TH1D*) f->Get( 277 TH1D *hNeutronSpectrumBeam = (TH1D*) f->Get("H18;1");
278 if(hNeutronSpectrumBeam->GetEntries() !=0) 278 if(hNeutronSpectrumBeam->GetEntries() !=0)
279 { 279 {
280 hNeutronSpectrumBeam->GetXaxis()->SetTit 280 hNeutronSpectrumBeam->GetXaxis()->SetTitle("Energy (MeV)");
281 hNeutronSpectrumBeam->GetYaxis()->SetTit 281 hNeutronSpectrumBeam->GetYaxis()->SetTitle("N neutrons (MeV^{-1}.particle^{-1})");
282 hNeutronSpectrumBeam->GetYaxis()->SetTit 282 hNeutronSpectrumBeam->GetYaxis()->SetTitleOffset(1.2);
283 hNeutronSpectrumBeam->Draw("H"); 283 hNeutronSpectrumBeam->Draw("H");
284 //Normalize histogram per bin width and 284 //Normalize histogram per bin width and per incoming particle.
285 norm_th1_per_bin_width_per_primaries(hNe 285 norm_th1_per_bin_width_per_primaries(hNeutronSpectrumBeam,total_primaries);
286 NeutronSpectrumBeam->SetLogy(); 286 NeutronSpectrumBeam->SetLogy();
287 NeutronSpectrumBeam->Print("./Results/Pa 287 NeutronSpectrumBeam->Print("./Results/ParticlesEnergySpectra/Beam/NeutronSpectrumBeam.pdf");
288 } 288 }
289 289
290 290
291 //----------------->> PARTICLES EMITTED DUE 291 //----------------->> PARTICLES EMITTED DUE TO ISOTOPE DECAY
292 292
293 //Positrons// 293 //Positrons//
294 TCanvas *PositronSpectrumDecay = new TCanvas 294 TCanvas *PositronSpectrumDecay = new TCanvas("PositronSpectrumDecay", "Spectrum of the positrons created by the decays in the target");
295 TH1D *hPositronSpectrumDecay = (TH1D*) f->Ge 295 TH1D *hPositronSpectrumDecay = (TH1D*) f->Get("H19;1");
296 if(hPositronSpectrumDecay->GetEntries() !=0) 296 if(hPositronSpectrumDecay->GetEntries() !=0)
297 { 297 {
298 hPositronSpectrumDecay->GetXaxis()->SetT 298 hPositronSpectrumDecay->GetXaxis()->SetTitle("Energy (MeV)");
299 hPositronSpectrumDecay->GetYaxis()->SetT 299 hPositronSpectrumDecay->GetYaxis()->SetTitle("N positrons (MeV^{-1}.particle^{-1})");
300 hPositronSpectrumDecay->GetYaxis()->SetT 300 hPositronSpectrumDecay->GetYaxis()->SetTitleOffset(1.2);
301 //Normalize histogram per bin width and 301 //Normalize histogram per bin width and per incoming particle.
302 norm_th1_per_bin_width_per_primaries(hPo 302 norm_th1_per_bin_width_per_primaries(hPositronSpectrumDecay,total_primaries);
303 hPositronSpectrumDecay->Draw("H"); 303 hPositronSpectrumDecay->Draw("H");
304 PositronSpectrumDecay->SetLogy(); 304 PositronSpectrumDecay->SetLogy();
305 PositronSpectrumDecay->Print("./Results/ 305 PositronSpectrumDecay->Print("./Results/ParticlesEnergySpectra/Decay/PositronSpectrumDecay.pdf");
306 } 306 }
307 307
308 //Electrons// 308 //Electrons//
309 TCanvas *ElectronSpectrumDecay = new TCanvas 309 TCanvas *ElectronSpectrumDecay = new TCanvas("ElectronSpectrumDecay", "Spectrum of the electrons created by the decays in the target");
310 TH1D *hElectronSpectrumDecay = (TH1D*) f->Ge 310 TH1D *hElectronSpectrumDecay = (TH1D*) f->Get("H110;1");
311 if(hElectronSpectrumDecay->GetEntries() !=0) 311 if(hElectronSpectrumDecay->GetEntries() !=0)
312 { 312 {
313 hElectronSpectrumDecay->GetXaxis()->SetT 313 hElectronSpectrumDecay->GetXaxis()->SetTitle("Energy (MeV)");
314 hElectronSpectrumDecay->GetYaxis()->SetT 314 hElectronSpectrumDecay->GetYaxis()->SetTitle("N electrons (MeV^{-1}.particle^{-1})");
315 hElectronSpectrumDecay->GetYaxis()->SetT 315 hElectronSpectrumDecay->GetYaxis()->SetTitleOffset(1.2);
316 //Normalize histogram per bin width and 316 //Normalize histogram per bin width and per incoming particle.
317 norm_th1_per_bin_width_per_primaries(hEl 317 norm_th1_per_bin_width_per_primaries(hElectronSpectrumDecay,total_primaries);
318 hElectronSpectrumDecay->Draw("H"); 318 hElectronSpectrumDecay->Draw("H");
319 ElectronSpectrumDecay->SetLogy(); 319 ElectronSpectrumDecay->SetLogy();
320 ElectronSpectrumDecay->Print("./Results/ 320 ElectronSpectrumDecay->Print("./Results/ParticlesEnergySpectra/Decay/ElectronSpectrumDecay.pdf");
321 } 321 }
322 322
323 //Gammas// 323 //Gammas//
324 TCanvas *GammaSpectrumDecay = new TCanvas("G 324 TCanvas *GammaSpectrumDecay = new TCanvas("GammaSpectrumDecay", "Spectrum of the gammas created by the decays in the target");
325 TH1D *hGammaSpectrumDecay = (TH1D*) f->Get(" 325 TH1D *hGammaSpectrumDecay = (TH1D*) f->Get("H111;1");
326 if(hGammaSpectrumDecay->GetEntries() !=0) 326 if(hGammaSpectrumDecay->GetEntries() !=0)
327 { 327 {
328 hGammaSpectrumDecay->GetXaxis()->SetTitl 328 hGammaSpectrumDecay->GetXaxis()->SetTitle("Energy (MeV)");
329 hGammaSpectrumDecay->GetYaxis()->SetTitl 329 hGammaSpectrumDecay->GetYaxis()->SetTitle("N Gammas (MeV^{-1}.particle^{-1})");
330 hGammaSpectrumDecay->GetYaxis()->SetTitl 330 hGammaSpectrumDecay->GetYaxis()->SetTitleOffset(1.2);
331 //Normalize histogram per bin width and 331 //Normalize histogram per bin width and per incoming particle.
332 norm_th1_per_bin_width_per_primaries(hGa 332 norm_th1_per_bin_width_per_primaries(hGammaSpectrumDecay,total_primaries);
333 hGammaSpectrumDecay->Draw("H"); 333 hGammaSpectrumDecay->Draw("H");
334 GammaSpectrumDecay->SetLogy(); 334 GammaSpectrumDecay->SetLogy();
335 GammaSpectrumDecay->Print("./Results/Par 335 GammaSpectrumDecay->Print("./Results/ParticlesEnergySpectra/Decay/GammaSpectrumDecay.pdf");
336 } 336 }
337 337
338 //Neutrons// 338 //Neutrons//
339 TCanvas *NeutronSpectrumDecay = new TCanvas 339 TCanvas *NeutronSpectrumDecay = new TCanvas("NeutronSpectrumDecay", "Spectrum of the neutrons created by the decays in the target");
340 TH1D *hNeutronSpectrumDecay = (TH1D*) f->Ge 340 TH1D *hNeutronSpectrumDecay = (TH1D*) f->Get("H112;1");
341 if(hNeutronSpectrumDecay->GetEntries() !=0) 341 if(hNeutronSpectrumDecay->GetEntries() !=0)
342 { 342 {
343 hNeutronSpectrumDecay->GetXaxis()->SetT 343 hNeutronSpectrumDecay->GetXaxis()->SetTitle("Energy (MeV)");
344 hNeutronSpectrumDecay->GetYaxis()->SetT 344 hNeutronSpectrumDecay->GetYaxis()->SetTitle("N Gammas (MeV^{-1}.particle^{-1})");
345 hNeutronSpectrumDecay->GetYaxis()->SetT 345 hNeutronSpectrumDecay->GetYaxis()->SetTitleOffset(1.2);
346 //Normalize histogram per bin width and 346 //Normalize histogram per bin width and per incoming particle.
347 norm_th1_per_bin_width_per_primaries(hN 347 norm_th1_per_bin_width_per_primaries(hNeutronSpectrumDecay,total_primaries);
348 hNeutronSpectrumDecay->Draw("H"); 348 hNeutronSpectrumDecay->Draw("H");
349 NeutronSpectrumDecay->SetLogy(); 349 NeutronSpectrumDecay->SetLogy();
350 NeutronSpectrumDecay->Print("./Results/ 350 NeutronSpectrumDecay->Print("./Results/ParticlesEnergySpectra/Decay/NeutronSpectrumBeam.pdf");
351 } 351 }
352 352
353 353
354 //Nu_e// 354 //Nu_e//
355 TCanvas *NuESpectrumDecay = new TCanvas("NuE 355 TCanvas *NuESpectrumDecay = new TCanvas("NuESpectrumDecay", "Spectrum of the Nu_e created by the decays in the target");
356 TH1D *hNuESpectrumDecay = (TH1D*) f->Get("H1 356 TH1D *hNuESpectrumDecay = (TH1D*) f->Get("H113;1");
357 if(hNuESpectrumDecay->GetEntries() !=0) 357 if(hNuESpectrumDecay->GetEntries() !=0)
358 { 358 {
359 hNuESpectrumDecay->GetXaxis()->SetTitle( 359 hNuESpectrumDecay->GetXaxis()->SetTitle("Energy (MeV)");
360 hNuESpectrumDecay->GetYaxis()->SetTitle( 360 hNuESpectrumDecay->GetYaxis()->SetTitle("N Nu_{e} (MeV^{-1}.particle^{-1})");
361 hNuESpectrumDecay->GetYaxis()->SetTitleO 361 hNuESpectrumDecay->GetYaxis()->SetTitleOffset(1.2);
362 //Normalize histogram per bin width and 362 //Normalize histogram per bin width and per incoming particle.
363 norm_th1_per_bin_width_per_primaries(hNu 363 norm_th1_per_bin_width_per_primaries(hNuESpectrumDecay,total_primaries);
364 hNuESpectrumDecay->Draw("H"); 364 hNuESpectrumDecay->Draw("H");
365 NuESpectrumDecay->SetLogy(); 365 NuESpectrumDecay->SetLogy();
366 NuESpectrumDecay->Print("./Results/Parti 366 NuESpectrumDecay->Print("./Results/ParticlesEnergySpectra/Decay/NuESpectrumDecay.pdf");
367 } 367 }
368 368
369 //AntiNu_e// 369 //AntiNu_e//
370 TCanvas *AntiNuESpectrumDecay = new TCanvas( 370 TCanvas *AntiNuESpectrumDecay = new TCanvas("AntiNuESpectrumDecay", "Spectrum of the Anti_Nu_e created by the decays in the target");
371 TH1D *hAntiNuESpectrumDecay = (TH1D*) f->Get 371 TH1D *hAntiNuESpectrumDecay = (TH1D*) f->Get("H114;1");
372 if(hAntiNuESpectrumDecay->GetEntries() !=0) 372 if(hAntiNuESpectrumDecay->GetEntries() !=0)
373 { 373 {
374 hAntiNuESpectrumDecay->GetXaxis()->SetTi 374 hAntiNuESpectrumDecay->GetXaxis()->SetTitle("Energy (MeV)");
375 hAntiNuESpectrumDecay->GetYaxis()->SetTi 375 hAntiNuESpectrumDecay->GetYaxis()->SetTitle("N AntiNu_{e} (MeV^{-1}.particle^{-1})");
376 hAntiNuESpectrumDecay->GetYaxis()->SetTi 376 hAntiNuESpectrumDecay->GetYaxis()->SetTitleOffset(1.2);
377 //Normalize histogram per bin width and 377 //Normalize histogram per bin width and per incoming particle.
378 norm_th1_per_bin_width_per_primaries(hAn 378 norm_th1_per_bin_width_per_primaries(hAntiNuESpectrumDecay,total_primaries);
379 hAntiNuESpectrumDecay->Draw("H"); 379 hAntiNuESpectrumDecay->Draw("H");
380 AntiNuESpectrumDecay->SetLogy(); 380 AntiNuESpectrumDecay->SetLogy();
381 AntiNuESpectrumDecay->Print("./Results/P 381 AntiNuESpectrumDecay->Print("./Results/ParticlesEnergySpectra/Decay/AntiNuESpectrumDecay.pdf");
382 } 382 }
383 383
384 384
385 385
386 386
387 ///////////////// 387 /////////////////
388 //2D histograms// 388 //2D histograms//
389 ///////////////// 389 /////////////////
390 390
391 TH2D *hBeamIntensityTarget = (TH2D*) f->Get( 391 TH2D *hBeamIntensityTarget = (TH2D*) f->Get("H20;1");
392 if(hBeamIntensityTarget->GetEntries()!=0) 392 if(hBeamIntensityTarget->GetEntries()!=0)
393 { 393 {
394 TCanvas *BeamIntensityTarget = new TCanv 394 TCanvas *BeamIntensityTarget = new TCanvas("BeamIntensityTarget", "Beam intensity (particle^{-1}.mm^{-2}) before hiting the target");
395 hBeamIntensityTarget->GetXaxis()->SetTit 395 hBeamIntensityTarget->GetXaxis()->SetTitle("X axis (mm)");
396 hBeamIntensityTarget->GetYaxis()->SetTit 396 hBeamIntensityTarget->GetYaxis()->SetTitle("Y axis (mm)");
397 hBeamIntensityTarget->SetTitle("Beam int 397 hBeamIntensityTarget->SetTitle("Beam intensity (particle^{-1}.mm^{-2}) before hiting the target");
398 //Normalizing 398 //Normalizing
399 norm_th2_per_bin_width_per_primaries(hBe 399 norm_th2_per_bin_width_per_primaries(hBeamIntensityTarget, total_primaries);
400 hBeamIntensityTarget->GetXaxis()->SetMax 400 hBeamIntensityTarget->GetXaxis()->SetMaxDigits(3);
401 hBeamIntensityTarget->GetYaxis()->SetMax 401 hBeamIntensityTarget->GetYaxis()->SetMaxDigits(3);
402 hBeamIntensityTarget->GetZaxis()->SetMax 402 hBeamIntensityTarget->GetZaxis()->SetMaxDigits(3);
403 hBeamIntensityTarget->Draw("colz"); 403 hBeamIntensityTarget->Draw("colz");
404 404
405 gStyle->SetOptStat(0); 405 gStyle->SetOptStat(0);
406 BeamIntensityTarget->Update(); 406 BeamIntensityTarget->Update();
407 BeamIntensityTarget->Print("./Results/Be 407 BeamIntensityTarget->Print("./Results/BeamData/BeamIntensityTarget.pdf");
408 BeamIntensityTarget->Print("./Results/Be 408 BeamIntensityTarget->Print("./Results/BeamData/BeamIntensityTarget.jpg");
409 } 409 }
410 410
411 TH2D *hBeamIntensityFoil = (TH2D*) f->Get("H 411 TH2D *hBeamIntensityFoil = (TH2D*) f->Get("H21;1");
412 if(hBeamIntensityFoil->GetEntries()!=0) 412 if(hBeamIntensityFoil->GetEntries()!=0)
413 { 413 {
414 TCanvas *BeamIntensityFoil = new TCanvas 414 TCanvas *BeamIntensityFoil = new TCanvas("BeamIntensityFoil", "Beam intensity before hiting the foil");
415 hBeamIntensityFoil->GetXaxis()->SetTitle 415 hBeamIntensityFoil->GetXaxis()->SetTitle("X axis (mm)");
416 hBeamIntensityFoil->GetYaxis()->SetTitle 416 hBeamIntensityFoil->GetYaxis()->SetTitle("Y axis (mm)");
417 hBeamIntensityFoil->SetTitle("Beam inten 417 hBeamIntensityFoil->SetTitle("Beam intensity (particle^{-1}.mm^{-2}) before hiting the foil");
418 //Normalizing 418 //Normalizing
419 norm_th2_per_bin_width_per_primaries(hBe 419 norm_th2_per_bin_width_per_primaries(hBeamIntensityFoil, total_primaries);
420 hBeamIntensityFoil->GetXaxis()->SetMaxDi 420 hBeamIntensityFoil->GetXaxis()->SetMaxDigits(3);
421 hBeamIntensityFoil->GetYaxis()->SetMaxDi 421 hBeamIntensityFoil->GetYaxis()->SetMaxDigits(3);
422 hBeamIntensityFoil->GetZaxis()->SetMaxDi 422 hBeamIntensityFoil->GetZaxis()->SetMaxDigits(3);
423 hBeamIntensityFoil->Draw("colz"); 423 hBeamIntensityFoil->Draw("colz");
424 424
425 BeamIntensityFoil->Print("./Results/Beam 425 BeamIntensityFoil->Print("./Results/BeamData/BeamIntensityFoil.pdf");
426 } 426 }
427 427
428 TH2D *hBeamIntensityOutTarget = (TH2D*) f->G 428 TH2D *hBeamIntensityOutTarget = (TH2D*) f->Get("H24;1");
429 if(hBeamIntensityOutTarget->GetEntries()!=0) 429 if(hBeamIntensityOutTarget->GetEntries()!=0)
430 { 430 {
431 TCanvas *BeamIntensityOutTarget = new TC 431 TCanvas *BeamIntensityOutTarget = new TCanvas("BeamIntensityOutTarget", "Beam intensity going out from the target");
432 432
433 hBeamIntensityOutTarget->GetXaxis()->Set 433 hBeamIntensityOutTarget->GetXaxis()->SetTitle("X axis (mm)");
434 hBeamIntensityOutTarget->GetYaxis()->Set 434 hBeamIntensityOutTarget->GetYaxis()->SetTitle("Y axis (mm)");
435 hBeamIntensityOutTarget->SetTitle("Beam 435 hBeamIntensityOutTarget->SetTitle("Beam intensity (particle^{-1}.mm^{-2}) after hiting the target");
436 hBeamIntensityOutTarget->Draw("colz"); 436 hBeamIntensityOutTarget->Draw("colz");
437 //Normalizing 437 //Normalizing
438 norm_th2_per_bin_width_per_primaries(hBe 438 norm_th2_per_bin_width_per_primaries(hBeamIntensityOutTarget, total_primaries);
439 hBeamIntensityOutTarget->GetXaxis()->Set 439 hBeamIntensityOutTarget->GetXaxis()->SetMaxDigits(3);
440 hBeamIntensityOutTarget->GetYaxis()->Set 440 hBeamIntensityOutTarget->GetYaxis()->SetMaxDigits(3);
441 hBeamIntensityOutTarget->GetZaxis()->Set 441 hBeamIntensityOutTarget->GetZaxis()->SetMaxDigits(3);
442 442
443 BeamIntensityOutTarget->Print("./Results 443 BeamIntensityOutTarget->Print("./Results/BeamData/BeamIntensityOutTarget.pdf");
444 } 444 }
445 445
446 446
447 447
448 TH2D *hRadioisotopeProduction = (TH2D*) f->G 448 TH2D *hRadioisotopeProduction = (TH2D*) f->Get("H22;1");
449 if(hRadioisotopeProduction->GetEntries()!=0) 449 if(hRadioisotopeProduction->GetEntries()!=0)
450 { 450 {
451 TCanvas *RadioisotopeProduction = new TC 451 TCanvas *RadioisotopeProduction = new TCanvas("RadioisotopeProduction", "Radioisotope production");
452 hRadioisotopeProduction->GetXaxis()->Set 452 hRadioisotopeProduction->GetXaxis()->SetTitle("Z");
453 hRadioisotopeProduction->GetXaxis()->Set 453 hRadioisotopeProduction->GetXaxis()->SetTitleOffset(1.2);
454 hRadioisotopeProduction->GetYaxis()->Set 454 hRadioisotopeProduction->GetYaxis()->SetTitle("A");
455 hRadioisotopeProduction->GetYaxis()->Set 455 hRadioisotopeProduction->GetYaxis()->SetTitleOffset(1.3);
456 hRadioisotopeProduction->GetZaxis()->Set 456 hRadioisotopeProduction->GetZaxis()->SetTitle("N radioisotopes (particle^{-1}.mm^{-2})");
457 hRadioisotopeProduction->GetZaxis()->Set 457 hRadioisotopeProduction->GetZaxis()->SetTitleOffset(1.3);
458 hRadioisotopeProduction->SetTitle("Numbe 458 hRadioisotopeProduction->SetTitle("Number of radioisotopes produced in the target (particle^{-1}.mm^{-2})");
459 //Normalizing 459 //Normalizing
460 norm_th2_per_bin_width_per_primaries(hRa 460 norm_th2_per_bin_width_per_primaries(hRadioisotopeProduction, total_primaries);
461 hRadioisotopeProduction->GetXaxis()->Set 461 hRadioisotopeProduction->GetXaxis()->SetMaxDigits(3);
462 hRadioisotopeProduction->GetYaxis()->Set 462 hRadioisotopeProduction->GetYaxis()->SetMaxDigits(3);
463 hRadioisotopeProduction->GetZaxis()->Set 463 hRadioisotopeProduction->GetZaxis()->SetMaxDigits(3);
464 hRadioisotopeProduction->Draw("lego2"); 464 hRadioisotopeProduction->Draw("lego2");
465 465
466 RadioisotopeProduction->SetLogz(); 466 RadioisotopeProduction->SetLogz();
467 RadioisotopeProduction->Print("./Results 467 RadioisotopeProduction->Print("./Results/IsotopesProduction/RadioisotopeProduction.pdf");
468 RadioisotopeProduction->Print("./Results 468 RadioisotopeProduction->Print("./Results/IsotopesProduction/RadioisotopeProduction.jpg");
469 } 469 }
470 470
471 471
472 472
473 473
474 TH2D *hEnergyDepth = (TH2D*) f->Get("H23;1") 474 TH2D *hEnergyDepth = (TH2D*) f->Get("H23;1");
475 if(hEnergyDepth->GetEntries()!=0) 475 if(hEnergyDepth->GetEntries()!=0)
476 { 476 {
477 477
478 TCanvas *EnergyDepth = new TCanvas("Ener 478 TCanvas *EnergyDepth = new TCanvas("EnergyDepth", "Energy of the proton according to their depth in the target");
479 479
480 hEnergyDepth->GetXaxis()->SetTitle("Dept 480 hEnergyDepth->GetXaxis()->SetTitle("Depth (mm)");
481 hEnergyDepth->GetYaxis()->SetTitle("Ener 481 hEnergyDepth->GetYaxis()->SetTitle("Energy (MeV)");
482 hEnergyDepth->SetTitle("Energy of the pr 482 hEnergyDepth->SetTitle("Energy of the proton according to their depth in the target (particle^{-1}.mm^{-1}.MeV^{-1})");
483 norm_th2_per_bin_width_per_primaries(hEn 483 norm_th2_per_bin_width_per_primaries(hEnergyDepth, total_primaries);
484 hEnergyDepth->GetXaxis()->SetMaxDigits(3 484 hEnergyDepth->GetXaxis()->SetMaxDigits(3);
485 hEnergyDepth->GetYaxis()->SetMaxDigits(3 485 hEnergyDepth->GetYaxis()->SetMaxDigits(3);
486 hEnergyDepth->GetZaxis()->SetMaxDigits(3 486 hEnergyDepth->GetZaxis()->SetMaxDigits(3);
487 hEnergyDepth->Draw("colz"); 487 hEnergyDepth->Draw("colz");
488 488
489 EnergyDepth->SetLogz(); 489 EnergyDepth->SetLogz();
490 EnergyDepth->Print("./Results/BeamData/E 490 EnergyDepth->Print("./Results/BeamData/EnergyDepth.pdf");
491 } 491 }
492 492
493 493
494 ///////////////////////////////////////// 494 /////////////////////////////////////////
495 //Stable isotope production by the beam// 495 //Stable isotope production by the beam//
496 ///////////////////////////////////////// 496 /////////////////////////////////////////
497 497
498 498
499 //------------------------------------------ 499 //---------------------------------------------------------------//
500 // Activity 500 // Activity //
501 //------------------------------------------ 501 //---------------------------------------------------------------//
502 502
503 /* 503 /*
504 TCanvas *ActivityPrimary = new TCanvas("Acti 504 TCanvas *ActivityPrimary = new TCanvas("ActivityPerParentIsotope", "Activity in mCi per parent isotope, and total activity");
505 TH1D *hActivityPrimary = (TH1D*) f->Get("H12 505 TH1D *hActivityPrimary = (TH1D*) f->Get("H12;1");
506 hActivityPrimary->GetXaxis()->Set(hActivityP 506 hActivityPrimary->GetXaxis()->Set(hActivityPrimary->GetEntries(),0.5,hActivityPrimary->GetEntries()+0.5);
507 hActivityPrimary->GetXaxis()->SetTitle("Isot 507 hActivityPrimary->GetXaxis()->SetTitle("Isotope");
508 hActivityPrimary->GetYaxis()->SetTitle("Acti 508 hActivityPrimary->GetYaxis()->SetTitle("Activity (mCi)");
509 hActivityPrimary->Draw(); 509 hActivityPrimary->Draw();
510 510
511 ActivityPrimary->SetLogy(); 511 ActivityPrimary->SetLogy();
512 ActivityPrimary->Print("./Results/ActivityPe 512 ActivityPrimary->Print("./Results/ActivityPerParentIsotope.pdf");
513 513
514 TCanvas *ActivityDaughter = new TCanvas("Act 514 TCanvas *ActivityDaughter = new TCanvas("ActivityPerDaughterIsotope", "Activity in mCi per daughter isotope, and total activity");
515 515
516 hActivityDaughter = (TH1F*) h1DH118->Clone() 516 hActivityDaughter = (TH1F*) h1DH118->Clone();
517 hActivityDaughter->GetXaxis()->Set(hActivity 517 hActivityDaughter->GetXaxis()->Set(hActivityDaughter.GetEntries(),0.5,hActivityDaughter.GetEntries()+0.5);
518 hActivityDaughter->GetXaxis()->SetTitle("Iso 518 hActivityDaughter->GetXaxis()->SetTitle("Isotope");
519 hActivityDaughter->GetYaxis()->SetTitle("Act 519 hActivityDaughter->GetYaxis()->SetTitle("Activity (mCi)");
520 hActivityDaughter->Draw(); 520 hActivityDaughter->Draw();
521 521
522 ActivityDaughter->SetLogy(); 522 ActivityDaughter->SetLogy();
523 ActivityDaughter->Print("./Results/ActivityP 523 ActivityDaughter->Print("./Results/ActivityPerDaughterIsotope.pdf");*/
524 524
525 525
526 526
527 /* 527 /*
528 TCanvas *StableIsotopes = new TCanvas("Stabl 528 TCanvas *StableIsotopes = new TCanvas("StableIsotopes", "Production of stable isotopes in the target");
529 529
530 hStableIsotopes = (TH1F*) h1DH117->Clone(); 530 hStableIsotopes = (TH1F*) h1DH117->Clone();
531 hStableIsotopes->GetXaxis()->Set(hStableIsot 531 hStableIsotopes->GetXaxis()->Set(hStableIsotopes->GetEntries(),0.5,hStableIsotopes->GetEntries()+0.5);
532 hStableIsotopes->GetXaxis()->SetTitle("Stabl 532 hStableIsotopes->GetXaxis()->SetTitle("Stable Isotope");
533 hStableIsotopes->GetYaxis()->SetTitle("Yield 533 hStableIsotopes->GetYaxis()->SetTitle("Yield");
534 hStableIsotopes->Draw(); 534 hStableIsotopes->Draw();
535 535
536 StableIsotopes->SetLogy(); 536 StableIsotopes->SetLogy();
537 StableIsotopes->Print("./Results/IsotopesPro 537 StableIsotopes->Print("./Results/IsotopesProduction/StableIsotopes.pdf");
538 */ 538 */
539 /* 539 /*
540 ///////////////////// 540 /////////////////////
541 //Yield per isotope// 541 //Yield per isotope//
542 ///////////////////// 542 /////////////////////
543 543
544 TCanvas *YieldParent = new TCanvas("YieldPer 544 TCanvas *YieldParent = new TCanvas("YieldPerParentIsotope", "Yield per parent isotope");
545 545
546 hYieldParent = (TH1F*) h1DH14->Clone(); 546 hYieldParent = (TH1F*) h1DH14->Clone();
547 hYieldParent->GetXaxis()->Set(hYieldParent.G 547 hYieldParent->GetXaxis()->Set(hYieldParent.GetEntries(),0.5,hYieldParent.GetEntries()+0.5);
548 hYieldParent->GetXaxis()->SetTitle("Isotope" 548 hYieldParent->GetXaxis()->SetTitle("Isotope");
549 hYieldParent->GetYaxis()->SetTitle("Yield"); 549 hYieldParent->GetYaxis()->SetTitle("Yield");
550 hYieldParent->Draw(); 550 hYieldParent->Draw();
551 551
552 YieldParent->SetLogy(); 552 YieldParent->SetLogy();
553 YieldParent->Print("./Results/YieldPerParent 553 YieldParent->Print("./Results/YieldPerParentIsotope.pdf");
554 554
555 TCanvas *YieldDaughter = new TCanvas("YieldP 555 TCanvas *YieldDaughter = new TCanvas("YieldPerDaughterIsotope", "Yield per daughter isotope");
556 556
557 hYieldDaughter = (TH1F*) h1DH119->Clone(); 557 hYieldDaughter = (TH1F*) h1DH119->Clone();
558 hYieldDaughter->GetXaxis()->Set(hYieldDaught 558 hYieldDaughter->GetXaxis()->Set(hYieldDaughter.GetEntries(),0.5,hYieldDaughter.GetEntries()+0.5);
559 hYieldDaughter->GetXaxis()->SetTitle("Isotop 559 hYieldDaughter->GetXaxis()->SetTitle("Isotope");
560 hYieldDaughter->GetYaxis()->SetTitle("Yield" 560 hYieldDaughter->GetYaxis()->SetTitle("Yield");
561 hYieldDaughter->Draw(); 561 hYieldDaughter->Draw();
562 562
563 YieldDaughter->SetLogy(); 563 YieldDaughter->SetLogy();
564 YieldDaughter->Print("./Results/YieldPerDaug 564 YieldDaughter->Print("./Results/YieldPerDaughterIsotope.pdf");
565 565
566 566
567 TCanvas *ProductionPerSecParent = new TCanva 567 TCanvas *ProductionPerSecParent = new TCanvas("ProductionPerSecParent", "Production per second per parent");
568 568
569 hProdPerSec = (TH1F*) h1DH123->Clone(); 569 hProdPerSec = (TH1F*) h1DH123->Clone();
570 hProdPerSec->GetXaxis()->Set(hProdPerSec.Get 570 hProdPerSec->GetXaxis()->Set(hProdPerSec.GetEntries(),0.5,hProdPerSec.GetEntries()+0.5);
571 hProdPerSec->GetXaxis()->SetTitle("Isotope") 571 hProdPerSec->GetXaxis()->SetTitle("Isotope");
572 hProdPerSec->GetYaxis()->SetTitle("Productio 572 hProdPerSec->GetYaxis()->SetTitle("Production of isotope per second");
573 hProdPerSec->Draw(); 573 hProdPerSec->Draw();
574 574
575 ProductionPerSecParent->SetLogy(); 575 ProductionPerSecParent->SetLogy();
576 ProductionPerSecParent->Print("./Results/Pro 576 ProductionPerSecParent->Print("./Results/ProductionPerSec.pdf");
577 577
578 578
579 TCanvas *ProductionPerSecDaughter = new TCan 579 TCanvas *ProductionPerSecDaughter = new TCanvas("ProductionPerSecDaughter", "Production per second per of the parent of the isotopes");
580 580
581 hProdPerSecDaughter = (TH1F*) h1DH124->Clone 581 hProdPerSecDaughter = (TH1F*) h1DH124->Clone();
582 hProdPerSecDaughter->GetXaxis()->Set(hProdPe 582 hProdPerSecDaughter->GetXaxis()->Set(hProdPerSecDaughter.GetEntries(),0.5,hProdPerSecDaughter.GetEntries()+0.5);
583 hProdPerSecDaughter->GetXaxis()->SetTitle("I 583 hProdPerSecDaughter->GetXaxis()->SetTitle("Isotope");
584 hProdPerSecDaughter->GetYaxis()->SetTitle("P 584 hProdPerSecDaughter->GetYaxis()->SetTitle("Production of the parent of the isotope per second");
585 hProdPerSecDaughter->Draw(); 585 hProdPerSecDaughter->Draw();
586 586
587 ProductionPerSecDaughter->SetLogy(); 587 ProductionPerSecDaughter->SetLogy();
588 ProductionPerSecDaughter->Print("./Results/P 588 ProductionPerSecDaughter->Print("./Results/ProductionPerSecDaughter.pdf");
589 589
590 590
591 591
592 */ 592 */
593 ////////////////// 593 //////////////////
594 //Decay constant// 594 //Decay constant//
595 ////////////////// 595 //////////////////
596 /* 596 /*
597 TH1D *hYieldParent = (TH1D*) f->Get("H14;1") 597 TH1D *hYieldParent = (TH1D*) f->Get("H14;1");
598 hYieldParent->GetXaxis()->Set(hYieldParent-> 598 hYieldParent->GetXaxis()->Set(hYieldParent->GetEntries(),0.5,hYieldParent->GetEntries()+0.5);
599 599
600 TH1D *hYieldDaughter = (TH1D*) f->Get("H119" 600 TH1D *hYieldDaughter = (TH1D*) f->Get("H119");
601 hYieldDaughter->GetXaxis()->Set(hYieldDaught 601 hYieldDaughter->GetXaxis()->Set(hYieldDaughter->GetEntries(),0.5,hYieldDaughter->GetEntries()+0.5);
602 602
603 TH1D *hProdPerSec = (TH1D*) f->Get("H123"); 603 TH1D *hProdPerSec = (TH1D*) f->Get("H123");
604 hProdPerSec->GetXaxis()->Set(hProdPerSec->Ge 604 hProdPerSec->GetXaxis()->Set(hProdPerSec->GetEntries(),0.5,hProdPerSec->GetEntries()+0.5);
605 605
606 TH1D *hProdPerSecDaughter = (TH1D*) f->Get(" 606 TH1D *hProdPerSecDaughter = (TH1D*) f->Get("H124");
607 hProdPerSecDaughter->GetXaxis()->Set(hProdPe 607 hProdPerSecDaughter->GetXaxis()->Set(hProdPerSecDaughter->GetEntries(),0.5,hProdPerSecDaughter->GetEntries()+0.5);
608 608
609 TH1D *hConstantParent = (TH1D*) f->Get("H120 609 TH1D *hConstantParent = (TH1D*) f->Get("H120;1");
610 hConstantParent->GetXaxis()->Set(hConstantPa 610 hConstantParent->GetXaxis()->Set(hConstantParent->GetEntries(),0.5,hConstantParent->GetEntries()+0.5);
611 611
612 TH1D *hConstantDaughter = (TH1D*) f->Get("H1 612 TH1D *hConstantDaughter = (TH1D*) f->Get("H121;1");
613 hConstantDaughter->GetXaxis()->Set(hConstant 613 hConstantDaughter->GetXaxis()->Set(hConstantDaughter->GetEntries(),0.5,hConstantDaughter->GetEntries()+0.5);
614 614
615 TH1D *hConstantDaughterParent = (TH1D*) f->G 615 TH1D *hConstantDaughterParent = (TH1D*) f->Get("H122;1");
616 hConstantDaughterParent->GetXaxis()->Set(hCo 616 hConstantDaughterParent->GetXaxis()->Set(hConstantDaughterParent->GetEntries(),0.5,hConstantDaughterParent->GetEntries()+0.5);
617 */ 617 */
618 618
619 619
620 ///////////////////////////// 620 /////////////////////////////
621 //Plots of theorical curves// 621 //Plots of theorical curves//
622 ///////////////////////////// 622 /////////////////////////////
623 623
624 //------------------------------------------ 624 //----------------------------------------------------------------------------
625 // CASE OF PARENT ISOTOPES 625 // CASE OF PARENT ISOTOPES
626 //------------------------------------------ 626 //----------------------------------------------------------------------------
627 627
628 vector<string> name; //<---- name 628 vector<string> name; //<---- name of the isotope
629 vector<double> hDecayConstant; //<---- in 629 vector<double> hDecayConstant; //<---- in s-1
630 vector<double> hHalfLifeTime; //<---- in h 630 vector<double> hHalfLifeTime; //<---- in h
631 vector<double> hProdPerSec; //<---- nucl 631 vector<double> hProdPerSec; //<---- nuclei per sec
632 vector<double> hYieldParent; //<---- yiel 632 vector<double> hYieldParent; //<---- yield at the EOB
633 vector<double> hActivityParent; //<---- acti 633 vector<double> hActivityParent; //<---- activity (mCi) at the EOB
634 634
635 string s_tmp; 635 string s_tmp;
636 double x_tmp; 636 double x_tmp;
637 int i_tmp; 637 int i_tmp;
638 bool isEoF = false; 638 bool isEoF = false;
639 639
640 //------------------------ READING THE INPUT 640 //------------------------ READING THE INPUTS
641 G4output.open("Output_ParentIsotopes.txt"); 641 G4output.open("Output_ParentIsotopes.txt");
642 for(int i=0;i<4;i++)getline(G4output,endLine 642 for(int i=0;i<4;i++)getline(G4output,endLine); //<--- read header.
643 while(!isEoF) 643 while(!isEoF)
644 { 644 {
645 G4output >> s_tmp; getline(G4output,endL 645 G4output >> s_tmp; getline(G4output,endLine); //<--- name of isotope
646 isEoF = G4output.eof(); 646 isEoF = G4output.eof();
647 if(!isEoF) 647 if(!isEoF)
648 { 648 {
649 649
650 name.push_back(s_tmp); 650 name.push_back(s_tmp);
651 getline(G4output,endLine); //number of iso 651 getline(G4output,endLine); //number of isotopes in the simulation
652 G4output >> x_tmp; getline(G4output,endLin 652 G4output >> x_tmp; getline(G4output,endLine); //<--- decay constant (s-1)
653 hDecayConstant.push_back(x_tmp); 653 hDecayConstant.push_back(x_tmp);
654 G4output >> x_tmp; getline(G4output,endLin 654 G4output >> x_tmp; getline(G4output,endLine); //<--- half life time
655 hHalfLifeTime.push_back(x_tmp); 655 hHalfLifeTime.push_back(x_tmp);
656 getline(G4output,endLine); //<--- process 656 getline(G4output,endLine); //<--- process
657 G4output >> x_tmp; getline(G4output,endLin 657 G4output >> x_tmp; getline(G4output,endLine); //<--- nuclei per sec
658 hProdPerSec.push_back(x_tmp); 658 hProdPerSec.push_back(x_tmp);
659 G4output >> x_tmp; getline(G4output,endLin 659 G4output >> x_tmp; getline(G4output,endLine); //<--- yield EOB
660 hYieldParent.push_back(x_tmp); 660 hYieldParent.push_back(x_tmp);
661 G4output >> x_tmp; getline(G4output,endLin 661 G4output >> x_tmp; getline(G4output,endLine); //<--- activity EOB
662 hActivityParent.push_back(x_tmp); 662 hActivityParent.push_back(x_tmp);
663 getline(G4output,endLine); //<--- end of i 663 getline(G4output,endLine); //<--- end of isotope case
664 } 664 }
665 } 665 }
666 666
667 G4output.close(); 667 G4output.close();
668 668
669 669
670 //------------------------ CALCULATING THE Y 670 //------------------------ CALCULATING THE YIELDS/ACTIVITIES
671 const int size_parents = hYieldParent.size() 671 const int size_parents = hYieldParent.size();
672 672
673 //---> Yield 673 //---> Yield
674 TF1* table[size_parents] ; 674 TF1* table[size_parents] ;
675 TLegend* leg = new TLegend(0.85,0.35,0.95,0. 675 TLegend* leg = new TLegend(0.85,0.35,0.95,0.95);
676 double maximum; 676 double maximum;
677 677
678 //---> Activity 678 //---> Activity
679 TF1* tableActivity [size_parents] ; 679 TF1* tableActivity [size_parents] ;
680 TLegend* legActivity = new TLegend(0.85,0.35 680 TLegend* legActivity = new TLegend(0.85,0.35,0.95,0.95);
681 double maximumActivity = 0; 681 double maximumActivity = 0;
682 stringstream ssTotalActivity; 682 stringstream ssTotalActivity;
683 683
684 for(int i=0;i<hYieldParent.size();i++) 684 for(int i=0;i<hYieldParent.size();i++)
685 { 685 {
686 string nameIsotope = name[i]; 686 string nameIsotope = name[i];
687 double yield = hYieldParent[i]; 687 double yield = hYieldParent[i];
688 double decayConstant = hDecayConstant[i] 688 double decayConstant = hDecayConstant[i]*3600.; //<---- s-1 to h-1
689 double halfLifeTime = hHalfLifeTime[i]; 689 double halfLifeTime = hHalfLifeTime[i]; //<---- h
690 double nucleiPerSec = hProdPerSec[i]*360 690 double nucleiPerSec = hProdPerSec[i]*3600.; //<---- nuclei/sec to nuclei/h
691 double conv = 2.70E-8; 691 double conv = 2.70E-8;
692 692
693 stringstream titleCanvas; 693 stringstream titleCanvas;
694 stringstream titleHisto; 694 stringstream titleHisto;
695 stringstream titleLeg; 695 stringstream titleLeg;
696 696
697 titleCanvas << nameIsotope << " Producti 697 titleCanvas << nameIsotope << " Production";
698 titleHisto << nameIsotope << " productio 698 titleHisto << nameIsotope << " production" ;
699 titleLeg << nameIsotope ; 699 titleLeg << nameIsotope ;
700 700
701 ////CALCULATION OF SATURATION///// 701 ////CALCULATION OF SATURATION/////
702 double calculationYield = nucleiPerSec/d 702 double calculationYield = nucleiPerSec/decayConstant*(1-exp(-decayConstant*tIrradiation));
703 double calculationActivity = conv*nuclei 703 double calculationActivity = conv*nucleiPerSec*(1-exp(-decayConstant*tIrradiation));
704 double timeSaturationCalculation = 10.*l 704 double timeSaturationCalculation = 10.*log(2)/decayConstant; //in h.
705 double saturationYield = nucleiPerSec/de 705 double saturationYield = nucleiPerSec/decayConstant*(1-exp(-decayConstant*timeSaturationCalculation));
706 double saturationActivity = conv*nucleiP 706 double saturationActivity = conv*nucleiPerSec*(1-exp(-decayConstant*timeSaturationCalculation));
707 707
708 //To double check: this calculation must 708 //To double check: this calculation must be equal to the yield
709 //cout << calculationYield << " should b 709 //cout << calculationYield << " should be equal to " << hYieldParent[i] << endl;
710 //cout << calculationActivity << " shoul 710 //cout << calculationActivity << " should be equal to " << hActivityParent[i] << endl;
711 711
712 stringstream ssYield,ss1Yield,ssActivity 712 stringstream ssYield,ss1Yield,ssActivity,ss1Activity;
713 713
714 //STRINGSTREAM FOR NUCLEI PRODUCTION 714 //STRINGSTREAM FOR NUCLEI PRODUCTION
715 ssYield << "(x<="<< tIrradiation << ")*" 715 ssYield << "(x<="<< tIrradiation << ")*" << nucleiPerSec/decayConstant << "*(1 - exp(-" << decayConstant << "*x)) + (x>" << tIrradiation << ")*" << yield << "*exp(-" << decayConstant << "*(x- " << tIrradiation <<"))";
716 716
717 //STRINGSTREAM FOR THE SATURATION 717 //STRINGSTREAM FOR THE SATURATION
718 ss1Yield << nucleiPerSec/decayConstant < 718 ss1Yield << nucleiPerSec/decayConstant << "*(1 - exp(-" << decayConstant << "*x))";
719 719
720 //STRINGSTREAM FOR ACTIVITY ACCORDING TO 720 //STRINGSTREAM FOR ACTIVITY ACCORDING TO TIME
721 ssActivity << "(x<="<< tIrradiation << " 721 ssActivity << "(x<="<< tIrradiation << ")*" << conv*nucleiPerSec << "*(1 - exp(-" << decayConstant << "*x)) + (x>" << tIrradiation << ")*" << conv*decayConstant*yield << "*exp(-" << decayConstant << "*(x- " << tIrradiation <<"))";
722 722
723 //STRINGSTREAM FOR ACTIVITY SATURATION 723 //STRINGSTREAM FOR ACTIVITY SATURATION
724 ss1Activity << conv*nucleiPerSec << "*(1 724 ss1Activity << conv*nucleiPerSec << "*(1 - exp(-" << decayConstant << "*x))";
725 725
726 //TOTAL ACTIVITY 726 //TOTAL ACTIVITY
727 if(halfLifeTime > halfLifeLimit) 727 if(halfLifeTime > halfLifeLimit)
728 { 728 {
729 if(i == 0){ 729 if(i == 0){
730 ssTotalActivity << "(x<="<< tIrradiation 730 ssTotalActivity << "(x<="<< tIrradiation << ")*" << conv*nucleiPerSec << "*(1 - exp(-" << decayConstant << "*x)) + (x>" << tIrradiation << ")*" << conv*decayConstant*yield << "*exp(-" << decayConstant << "*(x- " << tIrradiation <<"))";
731 } 731 }
732 if(i > 0){ 732 if(i > 0){
733 ssTotalActivity << " + (x<="<< tIrradiat 733 ssTotalActivity << " + (x<="<< tIrradiation << ")*" << conv*nucleiPerSec << "*(1 - exp(-" << decayConstant << "*x)) + (x>" << tIrradiation << ")*" << conv*decayConstant*yield << "*exp(-" << decayConstant << "*(x- " << tIrradiation <<"))";
734 } 734 }
735 } 735 }
736 736
737 double max; 737 double max;
738 738
739 //PLOT OF NUCLEI PRODUCTION 739 //PLOT OF NUCLEI PRODUCTION
740 TF1 *fProd = new TF1(titleHisto.str().c_ 740 TF1 *fProd = new TF1(titleHisto.str().c_str(),ssYield.str().c_str(),tMin,tMax);
741 fProd->SetTitle(titleHisto.str().c_str() 741 fProd->SetTitle(titleHisto.str().c_str());
742 fProd->GetXaxis()->SetTitle("Time (hour) 742 fProd->GetXaxis()->SetTitle("Time (hour)");
743 fProd->GetYaxis()->SetTitle("Number of n 743 fProd->GetYaxis()->SetTitle("Number of nuclei");
744 744
745 max = fProd->GetMaximum(); 745 max = fProd->GetMaximum();
746 if(max>maximum){ maximum = max;}; 746 if(max>maximum){ maximum = max;};
747 747
748 748
749 TF1 *fActivity = new TF1(titleHisto.str( 749 TF1 *fActivity = new TF1(titleHisto.str().c_str(),ssActivity.str().c_str(),tMin,tMax);
750 fActivity->SetTitle(titleHisto.str().c_s 750 fActivity->SetTitle(titleHisto.str().c_str());
751 fActivity->GetXaxis()->SetTitle("Time (h 751 fActivity->GetXaxis()->SetTitle("Time (hour)");
752 fActivity->GetYaxis()->SetTitle("Activit 752 fActivity->GetYaxis()->SetTitle("Activity (mCi)");
753 753
754 max = fActivity->GetMaximum(); 754 max = fActivity->GetMaximum();
755 if(max>maximumActivity){ maximumActivity 755 if(max>maximumActivity){ maximumActivity = max;};
756 756
757 leg->AddEntry(fProd,titleLeg.str().c_str 757 leg->AddEntry(fProd,titleLeg.str().c_str());
758 table[i]=fProd; 758 table[i]=fProd;
759 759
760 legActivity->AddEntry(fActivity,titleLeg 760 legActivity->AddEntry(fActivity,titleLeg.str().c_str());
761 tableActivity[i]=fActivity; 761 tableActivity[i]=fActivity;
762 762
763 763
764 //---->Plotting yield as a function of t 764 //---->Plotting yield as a function of time
765 TCanvas *canvasYield = new TCanvas(title 765 TCanvas *canvasYield = new TCanvas(titleCanvas.str().c_str(),titleCanvas.str().c_str());
766 if(halfLifeTime > halfLifeLimit) //has a 766 if(halfLifeTime > halfLifeLimit) //has a life time larger than one minute to plot outputs.
767 { 767 {
768 fProd->Draw(); 768 fProd->Draw();
769 stringstream saveName; 769 stringstream saveName;
770 saveName << "./Results/IsotopesProduction/ 770 saveName << "./Results/IsotopesProduction/YieldOf" << nameIsotope << ".pdf";
771 canvasYield->Print(saveName.str().c_str()) 771 canvasYield->Print(saveName.str().c_str());
772 } 772 }
773 773
774 //---->Plotting activity as a function o 774 //---->Plotting activity as a function of time
775 TCanvas *canvasActivity = new TCanvas(ti 775 TCanvas *canvasActivity = new TCanvas(titleCanvas.str().c_str(),titleCanvas.str().c_str());
776 if(halfLifeTime > halfLifeLimit) //has a 776 if(halfLifeTime > halfLifeLimit) //has a life time larger than one minute to plot outputs.
777 { 777 {
778 fActivity->Draw(); 778 fActivity->Draw();
779 stringstream saveName; 779 stringstream saveName;
780 saveName << "./Results/IsotopesProduction/ 780 saveName << "./Results/IsotopesProduction/ActivityOf" << nameIsotope << ".pdf";
781 canvasActivity->Print(saveName.str().c_str 781 canvasActivity->Print(saveName.str().c_str());
782 } 782 }
783 783
784 784
785 //PLOT OF SATURATION CURVES 785 //PLOT OF SATURATION CURVES
786 stringstream titleCanvas1; 786 stringstream titleCanvas1;
787 stringstream titleHisto1; 787 stringstream titleHisto1;
788 titleHisto1 << nameIsotope << " saturati 788 titleHisto1 << nameIsotope << " saturation" ;
789 titleCanvas1 << nameIsotope << " Saturat 789 titleCanvas1 << nameIsotope << " Saturation";
790 790
791 TCanvas *canvasSaturationYield = new TCa 791 TCanvas *canvasSaturationYield = new TCanvas(titleCanvas1.str().c_str(),titleCanvas1.str().c_str());
792 TF1 *fSaturationYield = new TF1(titleHis 792 TF1 *fSaturationYield = new TF1(titleHisto1.str().c_str(),ss1Yield.str().c_str(),tMin,timeSaturationCalculation);
793 fSaturationYield->SetTitle(titleHisto1.s 793 fSaturationYield->SetTitle(titleHisto1.str().c_str());
794 fSaturationYield->GetXaxis()->SetTitle(" 794 fSaturationYield->GetXaxis()->SetTitle("Time (hour)");
795 fSaturationYield->GetYaxis()->SetTitle(" 795 fSaturationYield->GetYaxis()->SetTitle("Number of nuclei");
796 fSaturationYield->Draw(); 796 fSaturationYield->Draw();
797 797
798 stringstream saveName1Yield; 798 stringstream saveName1Yield;
799 saveName1Yield << "./Results/IsotopesPro 799 saveName1Yield << "./Results/IsotopesProduction/SaturationYieldOf" << nameIsotope << ".pdf";
800 canvasSaturationYield->Print(saveName1Yi 800 canvasSaturationYield->Print(saveName1Yield.str().c_str());
801 801
802 802
803 TCanvas *canvasSaturationActivity = new 803 TCanvas *canvasSaturationActivity = new TCanvas(titleCanvas1.str().c_str(),titleCanvas1.str().c_str());
804 TF1 *fSaturationActivity = new TF1(title 804 TF1 *fSaturationActivity = new TF1(titleHisto1.str().c_str(),ss1Activity.str().c_str(),tMin,timeSaturationCalculation);
805 fSaturationActivity->SetTitle(titleHisto 805 fSaturationActivity->SetTitle(titleHisto1.str().c_str());
806 fSaturationActivity->GetXaxis()->SetTitl 806 fSaturationActivity->GetXaxis()->SetTitle("Time (hour)");
807 fSaturationActivity->GetYaxis()->SetTitl 807 fSaturationActivity->GetYaxis()->SetTitle("Activity (mCi)");
808 fSaturationActivity->Draw(); 808 fSaturationActivity->Draw();
809 809
810 stringstream saveName1Activity; 810 stringstream saveName1Activity;
811 saveName1Activity << "./Results/Isotopes 811 saveName1Activity << "./Results/IsotopesProduction/ActivitiySaturationOf" << nameIsotope << ".pdf";
812 canvasSaturationActivity->Print(saveName 812 canvasSaturationActivity->Print(saveName1Activity.str().c_str());
813 813
814 814
815 } 815 }
816 816
817 817
818 //------------------------ PLOT ALL YIELDS O 818 //------------------------ PLOT ALL YIELDS ON THE SAME CANVAS
819 TCanvas* productionGraph = new TCanvas("Prod 819 TCanvas* productionGraph = new TCanvas("ProductionOfIsotopes", "Production of isotopes");
820 for(int i=0; i<size_parents; i++) 820 for(int i=0; i<size_parents; i++)
821 { 821 {
822 double halfLifeTime = hHalfLifeTime[i]; 822 double halfLifeTime = hHalfLifeTime[i]; //<---- h
823 if(halfLifeTime > halfLifeLimit) 823 if(halfLifeTime > halfLifeLimit)
824 { 824 {
825 int color = i+2; 825 int color = i+2; //<-- color to plot.
826 if(color == 10) color = 35; 826 if(color == 10) color = 35;
827 827
828 TF1* histo = (TF1*)table[i]; 828 TF1* histo = (TF1*)table[i];
829 histo->GetYaxis()->SetRangeUser(0.,maximum 829 histo->GetYaxis()->SetRangeUser(0.,maximum*1.2);
830 histo->SetTitle("Production of isotopes"); 830 histo->SetTitle("Production of isotopes");
831 histo->SetLineColor(color); 831 histo->SetLineColor(color);
832 histo->SetNpx(1000); 832 histo->SetNpx(1000);
833 833
834 if(i==0)histo->Draw(); 834 if(i==0)histo->Draw();
835 else histo->Draw("][sames"); 835 else histo->Draw("][sames");
836 } 836 }
837 } 837 }
838 838
839 leg->Draw("C,same"); 839 leg->Draw("C,same");
840 productionGraph->SetGridy(); 840 productionGraph->SetGridy();
841 productionGraph->SetTicky(); 841 productionGraph->SetTicky();
842 productionGraph->SetLogy(); 842 productionGraph->SetLogy();
843 productionGraph->SetTitle("Radioisotope prod 843 productionGraph->SetTitle("Radioisotope production");
844 productionGraph->Print("./Results/IsotopesPr 844 productionGraph->Print("./Results/IsotopesProduction/Yield.pdf");
845 productionGraph->Print("./Results/IsotopesPr 845 productionGraph->Print("./Results/IsotopesProduction/Yield.jpg");
846 846
847 847
848 848
849 //------------------------ PLOT ALL YIELDS O 849 //------------------------ PLOT ALL YIELDS ON THE SAME CANVAS
850 TCanvas* ActivityGraph = new TCanvas("Activi 850 TCanvas* ActivityGraph = new TCanvas("ActivityOfIsotopes", "Activity of isotopes");
851 851
852 TF1* histoActivity = (TF1*)tableActivity[0]; 852 TF1* histoActivity = (TF1*)tableActivity[0];
853 histoActivity->SetLineColor(2); 853 histoActivity->SetLineColor(2);
854 histoActivity->GetYaxis()->SetRangeUser(0.,m 854 histoActivity->GetYaxis()->SetRangeUser(0.,maximumActivity*1.2);
855 histoActivity->SetTitle("Activity of isotope 855 histoActivity->SetTitle("Activity of isotopes");
856 histoActivity->Draw(); 856 histoActivity->Draw();
857 857
858 for(int i=1; i<size_parents; i++) 858 for(int i=1; i<size_parents; i++)
859 { 859 {
860 double halfLifeTime = hHalfLifeTime[i]; 860 double halfLifeTime = hHalfLifeTime[i]; //<---- h
861 if(halfLifeTime > halfLifeLimit) 861 if(halfLifeTime > halfLifeLimit)
862 { 862 {
863 int color = i+2; 863 int color = i+2; //<-- color to plot.
864 if(color == 10) color = 35; 864 if(color == 10) color = 35;
865 865
866 TF1* histo = (TF1*)tableActivity[i]; 866 TF1* histo = (TF1*)tableActivity[i];
867 histo->GetYaxis()->SetRangeUser(0.,maximum 867 histo->GetYaxis()->SetRangeUser(0.,maximumActivity*1.2);
868 histo->SetTitle("Activity of isotopes"); 868 histo->SetTitle("Activity of isotopes");
869 histo->SetLineColor(color); 869 histo->SetLineColor(color);
870 histo->SetNpx(1000); 870 histo->SetNpx(1000);
871 if(i==0) histo->Draw(); 871 if(i==0) histo->Draw();
872 else histo->Draw("][sames"); 872 else histo->Draw("][sames");
873 } 873 }
874 } 874 }
875 875
876 legActivity->Draw("same"); 876 legActivity->Draw("same");
877 ActivityGraph->SetGridy(); 877 ActivityGraph->SetGridy();
878 ActivityGraph->SetTicky(); 878 ActivityGraph->SetTicky();
879 ActivityGraph->SetLogy(); 879 ActivityGraph->SetLogy();
880 ActivityGraph->Print("./Results/IsotopesProd 880 ActivityGraph->Print("./Results/IsotopesProduction/Activity.pdf");
881 ActivityGraph->Print("./Results/IsotopesProd 881 ActivityGraph->Print("./Results/IsotopesProduction/Activity.jpg");
882 882
883 883
884 TCanvas* TotalActivityGraph = new TCanvas("T 884 TCanvas* TotalActivityGraph = new TCanvas("TotalActivity", "Total Activity");
885 TF1 *fActivity = new TF1("TotalActivity",ssT 885 TF1 *fActivity = new TF1("TotalActivity",ssTotalActivity.str().c_str(),tMin,tMax);
886 fActivity->SetTitle("Sum of the activity of 886 fActivity->SetTitle("Sum of the activity of each isotope");
887 fActivity->GetXaxis()->SetTitle("Time (hour) 887 fActivity->GetXaxis()->SetTitle("Time (hour)");
888 fActivity->GetYaxis()->SetTitle("Activity (m 888 fActivity->GetYaxis()->SetTitle("Activity (mCi)");
889 fActivity->Draw(); 889 fActivity->Draw();
890 TotalActivityGraph->SetGridy(); 890 TotalActivityGraph->SetGridy();
891 TotalActivityGraph->SetTicky(); 891 TotalActivityGraph->SetTicky();
892 TotalActivityGraph->SetLogy(); 892 TotalActivityGraph->SetLogy();
893 TotalActivityGraph->Print("./Results/Isotope 893 TotalActivityGraph->Print("./Results/IsotopesProduction/TotalActivity.pdf");
894 894
895 895
896 896
897 897
898 //------------------------------------------ 898 //----------------------------------------------------------------------------
899 // CASE OF DAUGHTER ISOTOPES 899 // CASE OF DAUGHTER ISOTOPES
900 //------------------------------------------ 900 //----------------------------------------------------------------------------
901 901
902 vector<string> nameParent; //<--- 902 vector<string> nameParent; //<---- name of the isotope
903 vector<string> nameDaughter; //<- 903 vector<string> nameDaughter; //<---- name of the isotope
904 vector<double> hDecayConstantParent; //<-- 904 vector<double> hDecayConstantParent; //<---- in s-1
905 vector<double> hDecayConstantDaughter; //< 905 vector<double> hDecayConstantDaughter; //<---- in s-1
906 vector<double> hHalfLifeTimeParent; //<--- 906 vector<double> hHalfLifeTimeParent; //<---- in h
907 vector<double> hHalfLifeTimeDaughter; //<- 907 vector<double> hHalfLifeTimeDaughter; //<---- in h
908 vector<double> hProdPerSecDecay; //<---- 908 vector<double> hProdPerSecDecay; //<---- nuclei per sec
909 vector<double> hYieldDecay; //<---- yield 909 vector<double> hYieldDecay; //<---- yield at the EOB
910 vector<double> hActivityDecay; //<---- activ 910 vector<double> hActivityDecay; //<---- activity (mCi) at the EOB
911 911
912 912
913 //------------------------ READING THE INPUT 913 //------------------------ READING THE INPUTS
914 G4output.open("Output_DaughterIsotopes.txt") 914 G4output.open("Output_DaughterIsotopes.txt");
915 isEoF=false; 915 isEoF=false;
916 916
917 for(int i=0;i<5;i++)getline(G4output,endLine 917 for(int i=0;i<5;i++)getline(G4output,endLine); //<--- read header.
918 while(!isEoF) 918 while(!isEoF)
919 { 919 {
920 G4output >> s_tmp; getline(G4output,endL 920 G4output >> s_tmp; getline(G4output,endLine); //<--- name of daughter isotope
921 isEoF = G4output.eof(); 921 isEoF = G4output.eof();
922 if(!isEoF) 922 if(!isEoF)
923 { 923 {
924 924
925 nameDaughter.push_back(s_tmp); //cout << s 925 nameDaughter.push_back(s_tmp); //cout << s_tmp << " + " << endLine << endl;
926 G4output >> s_tmp; getline(G4output,endLin 926 G4output >> s_tmp; getline(G4output,endLine); //<--- name of parent isotope
927 nameParent.push_back(s_tmp); //cout << s_t 927 nameParent.push_back(s_tmp); //cout << s_tmp << " + " << endLine << endl;
928 G4output >> x_tmp; getline(G4output,endLin 928 G4output >> x_tmp; getline(G4output,endLine); //<--- decay constant (s-1) daughter
929 hDecayConstantDaughter.push_back(x_tmp); / 929 hDecayConstantDaughter.push_back(x_tmp); //cout << x_tmp << " + " << endLine << endl;
930 G4output >> x_tmp; getline(G4output,endLin 930 G4output >> x_tmp; getline(G4output,endLine); //<--- decay constant (s-1) parent
931 hDecayConstantParent.push_back(x_tmp); //c 931 hDecayConstantParent.push_back(x_tmp); //cout << x_tmp << " + " << endLine << endl;
932 G4output >> x_tmp; getline(G4output,endLin 932 G4output >> x_tmp; getline(G4output,endLine); //<--- half life time
933 hHalfLifeTimeDaughter.push_back(x_tmp); // 933 hHalfLifeTimeDaughter.push_back(x_tmp); //cout << x_tmp << " + " << endLine << endl;
934 G4output >> x_tmp; getline(G4output,endLin 934 G4output >> x_tmp; getline(G4output,endLine); //<--- half life time
935 hHalfLifeTimeParent.push_back(x_tmp); //co 935 hHalfLifeTimeParent.push_back(x_tmp); //cout << x_tmp << " + " << endLine << endl;
936 G4output >> x_tmp; getline(G4output,endLin 936 G4output >> x_tmp; getline(G4output,endLine); //<--- nuclei per sec
937 hProdPerSecDecay.push_back(x_tmp); //cout 937 hProdPerSecDecay.push_back(x_tmp); //cout << x_tmp << " + " << endLine << endl;
938 G4output >> x_tmp; getline(G4output,endLin 938 G4output >> x_tmp; getline(G4output,endLine); //<--- yield EOB
939 hYieldDecay.push_back(x_tmp); //cout << x_ 939 hYieldDecay.push_back(x_tmp); //cout << x_tmp << " + " << endLine << endl;
940 G4output >> x_tmp; getline(G4output,endLin 940 G4output >> x_tmp; getline(G4output,endLine); //<--- activity EOB
941 hActivityDecay.push_back(x_tmp); //cout << 941 hActivityDecay.push_back(x_tmp); //cout << x_tmp << " + " << endLine << endl;
942 getline(G4output,endLine); //<--- end of i 942 getline(G4output,endLine); //<--- end of isotope case
943 //getchar(); 943 //getchar();
944 } 944 }
945 } 945 }
946 946
947 G4output.close(); 947 G4output.close();
948 948
949 //------------------------ CALCULATING THE Y 949 //------------------------ CALCULATING THE YIELDS/ACTIVITIES
950 for(int i=1;i<=hDecayConstantDaughter.size() 950 for(int i=1;i<=hDecayConstantDaughter.size();i++){
951 951
952 string nameIsotope = nameDaughter[i]; 952 string nameIsotope = nameDaughter[i];
953 double yieldEOBDaughter = hYieldDecay[i]; 953 double yieldEOBDaughter = hYieldDecay[i];
954 double decayConstantDaughter = hDecayConst 954 double decayConstantDaughter = hDecayConstantDaughter[i]*3600.;
955 double decayConstantParent = hDecayConstan 955 double decayConstantParent = hDecayConstantParent[i]*3600;
956 double halfLifeDaughter = hHalfLifeTimeDau 956 double halfLifeDaughter = hHalfLifeTimeDaughter[i]*3600.;
957 double halfLifeParent = hHalfLifeTimeParen 957 double halfLifeParent = hHalfLifeTimeParent[i]*3600;
958 double nucleiPerSec = hProdPerSecDecay[i]* 958 double nucleiPerSec = hProdPerSecDecay[i]*3600.;
959 double yieldEOBParent = nucleiPerSec/decay 959 double yieldEOBParent = nucleiPerSec/decayConstantParent*(1-exp(-decayConstantParent*tIrradiation));
960 960
961 961
962 if(halfLifeDaughter > halfLifeLimit && hal 962 if(halfLifeDaughter > halfLifeLimit && halfLifeParent > halfLifeLimit){
963 963
964 stringstream titleCanvas; 964 stringstream titleCanvas;
965 stringstream titleHisto; 965 stringstream titleHisto;
966 966
967 titleCanvas << nameIsotope << " Decay"; 967 titleCanvas << nameIsotope << " Decay";
968 titleHisto << nameIsotope << " Decay" ; 968 titleHisto << nameIsotope << " Decay" ;
969 969
970 double yieldEOBcalc = nucleiPerSec*((1-e 970 double yieldEOBcalc = nucleiPerSec*((1-exp(-decayConstantDaughter*tIrradiation))/decayConstantDaughter + (exp(-decayConstantDaughter*tIrradiation)-exp(-decayConstantParent*tIrradiation))/(decayConstantDaughter - decayConstantParent));
971 971
972 cout << "Isotope : " << nameIsotope << " 972 cout << "Isotope : " << nameIsotope << " with yield at the EOB " << yieldEOBDaughter << " calculation : " << yieldEOBcalc
973 << " decay constant : " << decayConstan 973 << " decay constant : " << decayConstantDaughter << " parent decay constant : " << decayConstantParent
974 << " nucleiPerSec of the parent " << nucl 974 << " nucleiPerSec of the parent " << nucleiPerSec << " yieldEOBParent " << yieldEOBParent << endl;
975 975
976 976
977 TCanvas *canvasYield = new TCanvas(title 977 TCanvas *canvasYield = new TCanvas(titleCanvas.str().c_str(),titleCanvas.str().c_str());
978 978
979 979
980 stringstream ss; 980 stringstream ss;
981 981
982 ss << "(x<="<< tIrradiation << ")*" << n 982 ss << "(x<="<< tIrradiation << ")*" << nucleiPerSec << "*((1 - exp(-" << decayConstantDaughter << "*x))/" << decayConstantDaughter << " + (exp(-" << decayConstantDaughter << "*x)-exp(-" << decayConstantParent << "*x))/(" << decayConstantDaughter-decayConstantParent << "))+ (x>" << tIrradiation << ")*" << yieldEOBcalc << "*exp(-" << decayConstantDaughter << "*(x - " << tIrradiation << ")) + " << decayConstantParent*yieldEOBParent/(decayConstantDaughter-decayConstantParent) << "*(exp(- " << decayConstantParent << "*(x - " << tIrradiation << ")) - exp(- " << decayConstantDaughter << "*(x-" << tIrradiation << ")))";
983 983
984 984
985 TF1 *fProd = new TF1(titleHisto.str().c_ 985 TF1 *fProd = new TF1(titleHisto.str().c_str(),ss.str().c_str(),tMin, tMax);
986 fProd->SetTitle(titleHisto.str().c_str() 986 fProd->SetTitle(titleHisto.str().c_str());
987 fProd->GetXaxis()->SetTitle("Time (hour) 987 fProd->GetXaxis()->SetTitle("Time (hour)");
988 fProd->GetYaxis()->SetTitle("Number of n 988 fProd->GetYaxis()->SetTitle("Number of nuclei");
989 989
990 } 990 }
991 991
992 } 992 }
993 993
994 f->Close(); 994 f->Close();
995 results.close(); 995 results.close();
996 996
997 997
998 } 998 }
999 999
1000 1000
1001 1001